miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01942;mir-1937;AAHY01043322.1/11565-11447 10090:Mus musculus
(house mouse)
Length = 119
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 25 cctggtctacagagtgagttccaggacagccagg 58
||||||||||||||| ||||||||||||||||||
Sbjct: 11 cctggtctacagagtaagttccaggacagccagg 44
>RF01942;mir-1937;AAHY01028167.1/11464-11345 10090:Mus musculus
(house mouse)
Length = 120
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 41 agttccaggacagccagggctacataaagaaaccctgtct 80
|||||||||||||||||||||| | | |||||||||||||
Sbjct: 48 agttccaggacagccagggctataaagagaaaccctgtct 9
>RF00100;7SK;AAHX01027282.1/9267-9045 10116:Rattus norvegicus
(Norway rat)
Length = 223
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 41 agttccaggacagccagggctacataaagaaaccctg 77
|||||||||||| |||| |||||| ||||||||||||
Sbjct: 157 agttccaggacaaccagagctacacaaagaaaccctg 193
>RF00100;7SK;CAAA01138734.1/41922-41649 10090:Mus musculus (house
mouse)
Length = 274
Score = 46.1 bits (23), Expect = 2e-04
Identities = 53/62 (85%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 8 tctgagtttgaga--ccaccctggtctacagagtgagttccaggacagccagggctacat 65
||||||||||||| ||||||| ||||||| ||||| ||||| |||||| ||| || |||
Sbjct: 204 tctgagtttgagaggccaccctagtctacatagtgaattccaagacagctaggtctgcat 263
Query: 66 aa 67
||
Sbjct: 264 aa 265
