miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 107 bits (54), Expect = 3e-23
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 39 taattttgtactacagttagtacaaagttgagtcatctattttagaacggagggagta 96
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 taattttgtactatagttagtacaaagttgagtcatctattttagaacggagggagta 101
Score = 75.8 bits (38), Expect = 1e-13
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 55 ttagtacaaagttgagtcatctattttagaacggagggagta 96
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 46 ttagtacaaagttgagtcatctattttggaacggagggagta 5
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 93.7 bits (47), Expect = 4e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 26 aaaatagatgatttaattttgtactacagttagtacaaagttgagtcatctattttagaa 85
||||||||||| | || ||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 20 aaaatagatgactcaactttgtactaaagatagtacaaagttgagtcgtctattttagaa 79
Query: 86 cggagggagta 96
|||||||||||
Sbjct: 80 cggagggagta 90
Score = 73.8 bits (37), Expect = 4e-13
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 17 ctccgttctaaaatagatgatttaattttgtactacagttagtacaaagttgagtcatct 76
||||||||||||||||| || | || ||||||||| ||||||||||||||||||||||
Sbjct: 84 ctccgttctaaaatagacgactcaactttgtactatctttagtacaaagttgagtcatct 25
Query: 77 atttt 81
|||||
Sbjct: 24 atttt 20
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 89.7 bits (45), Expect = 7e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 17 ctccgttctaaaatagatgatttaattttgtactacagttagtacaaagttgagtcatct 76
|||| ||| ||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct: 11 ctccattccaaaatagatgacccaactttgtactaaagttagtacaaagttgagtcatct 70
Query: 77 attttagaacggagggagtat 97
||||| ||| |||||||||||
Sbjct: 71 attttggaatggagggagtat 91
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 17 ctccgttctaaaatagatgatttaattttgtactacagttagtacaaagttgagtcatct 76
|||| ||| ||||||||||| | || ||||||||| |||||||||||||| |||||||
Sbjct: 84 ctccattccaaaatagatgactcaactttgtactaactttagtacaaagttgggtcatct 25
Query: 77 attttagaacggagggagta 96
||||| ||| ||||| ||||
Sbjct: 24 attttggaatggaggaagta 5
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 89.7 bits (45), Expect = 7e-18
Identities = 72/81 (88%)
Strand = Plus / Minus
Query: 17 ctccgttctaaaatagatgatttaattttgtactacagttagtacaaagttgagtcatct 76
|||||||| ||||||||||| || ||| |||| ||||||||||||||||||||||||
Sbjct: 84 ctccgttccaaaatagatgacccaactttacactaaagttagtacaaagttgagtcatct 25
Query: 77 attttagaacggagggagtat 97
||||| |||||||||||||||
Sbjct: 24 attttggaacggagggagtat 4
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 17 ctccgttctaaaatagatgatttaattttgtactacagttagtacaaagttgagtcatct 76
|||||||| ||||||||||| | || ||||||||| ||||| ||||||| |||||||
Sbjct: 11 ctccgttccaaaatagatgactcaactttgtactaactttagtgtaaagttgggtcatct 70
Query: 77 attttagaacggagggagta 96
||||| ||||||||||||||
Sbjct: 71 attttggaacggagggagta 90
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 87.7 bits (44), Expect = 3e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 18 tccgttctaaaatagatgatttaattttgtactacagttagtacaaagttgagtcatcta 77
||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct: 12 tccgttccaaaatagatgacccaactttgtactaaagttagtacaaagttgagtcatcta 71
Query: 78 ttttagaacggagggagtat 97
|||| |||||||| |||||
Sbjct: 72 ttttgaaacggaggaagtat 91
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 17 ctccgttctaaaatagatgatttaattttgtactacagttagtacaaagttgagtcatct 76
||||||| ||||||||||| | || ||||||||| |||||||||||||| |||||||
Sbjct: 84 ctccgtttcaaaatagatgactcaactttgtactaactttagtacaaagttgggtcatct 25
Query: 77 attttagaacggagggagta 96
||||| ||||||| ||||||
Sbjct: 24 attttggaacggaaggagta 5
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 53 agttagtacaaagttgagtcatctattttagaacggagggagta 96
|||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 48 agttagtataaagttgagtcatctattttggaacggagggagta 5
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 53 agttagtacaaagttgagtcatctattttagaacggagggagta 96
|||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct: 58 agttagtaaaaagttgggtcatctattttggaacggagggagta 101
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 69.9 bits (35), Expect = 6e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 39 taattttgtactacagttagtacaaagttgagtcatctattttagaacggagggagtat 97
|||||||||||||||| ||||||||||||||| || |||||| | |||||||||||||
Sbjct: 44 taattttgtactacagctagtacaaagttgagacacttattttgggacggagggagtat 102
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 56 tagtacaaagttgagtcatctattttagaacggagggagtat 97
||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 24 tagtacaaagttgggtcatctattttggaacggagggagtat 65
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 61 caaagttgagtcatctattttagaacggagggagta 96
||||||||||||||||||||| ||||||||||||||
Sbjct: 40 caaagttgagtcatctattttggaacggagggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 61 caaagttgagtcatctattttagaacggagggagt 95
||||||||||||||||||||| |||||||||||||
Sbjct: 41 caaagttgagtcatctattttggaacggagggagt 75
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 60.0 bits (30), Expect = 6e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 43 tttgtactacagttagtacaaagttgagtcatctattttagaacggagggagta 96
||||||||| || ||||||||||||||| ||| |||||| |||||||||||||
Sbjct: 48 tttgtactagagctagtacaaagttgagacatttattttgaaacggagggagta 101
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 60.0 bits (30), Expect = 6e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 43 tttgtactacagttagtacaaagttgagtcatctattttagaacggagggagta 96
||||||||| ||||| |||||||||||| ||| |||||| | ||||||||||||
Sbjct: 48 tttgtactaaagttaatacaaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 40 aattttgtactacagttagtacaaagttgagtcatctattttagaacggagggagta 96
|||||||||||| || ||||||||||||||| || |||||| | ||||||||||||
Sbjct: 45 aattttgtactagagctagtacaaagttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 44 ttgtactacagttagtacaaagttgagtcatctattttagaacggagggagta 96
|||||||| ||||| |||||||||||| ||| |||||| | ||||||||||||
Sbjct: 49 ttgtactaaagttaatacaaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 53 agttagtacaaagttgagtcatctattttagaacggagggagtat 97
||||||||||||||||||||| |||||| | |||||||||||||
Sbjct: 48 agttagtacaaagttgagtcacttattttgggacggagggagtat 4
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 56.0 bits (28), Expect = 9e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 53 agttagtacaaagttgagtcatctattttagaacggagggagta 96
||||| |||||||||| |||||||||||| ||||||| ||||||
Sbjct: 48 agttaatacaaagttgggtcatctattttggaacggaaggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 53 agttagtacaaagttgagtcatctattttagaacggagggagta 96
||||| |||||||||| |||||||||||| |||||| ||||||
Sbjct: 73 agttaatacaaagttgggtcatctattttgaaacggaaggagta 116
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 43 tttgtactacagttagtacaaagttgagtcatctattttagaacggagggagtat 97
||||||||| |||||||||||| ||||| || |||||| | |||||||||||||
Sbjct: 96 tttgtactaaagttagtacaaacttgagacagttattttgggacggagggagtat 150
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 55 ttagtacaaagttgagtcatctattttagaacggagggagtat 97
||||||||||||||||||| |||||| | |||||||||||||
Sbjct: 59 ttagtacaaagttgagtcacttattttgggacggagggagtat 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 43 tttgtactacagttagtacaaagttgagtc 72
||||||||| ||||||| ||||||||||||
Sbjct: 68 tttgtactaaagttagtgcaaagttgagtc 39
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 43 tttgtactacagttagtacaaagttgagtcatctattttagaacggagggagtat 97
||||||||| || ||||||||| ||||| || |||||| |||||||||||||||
Sbjct: 58 tttgtactagagctagtacaaatttgagacacttattttggaacggagggagtat 4
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 43 tttgtactacagttagtacaaagttgagtcatctattttagaacggagggagtat 97
||||||||| |||||||||||||||||| || |||||| | | |||||||||||
Sbjct: 55 tttgtactaaagttagtacaaagttgagacacttattttgggatggagggagtat 109
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 43 tttgtactacagttagtacaaagttgagtcatctattttagaacggagggagta 96
||||||||| |||||||| |||||||||||| || ||| | ||||||||||||
Sbjct: 37 tttgtactaaagttagtataaagttgagtcacttaatttgggacggagggagta 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 55 ttagtacaaagttgagtcatctattttagaacggagggagtat 97
||||||||||||||||||| |||||| | || ||||||||||
Sbjct: 46 ttagtacaaagttgagtcacttattttgggacagagggagtat 4
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 43 tttgtactacagttagtacaaagttgagtcatctattttagaacggagggagta 96
||||||||| ||||||||||||||| || || |||||| | ||||||||||||
Sbjct: 48 tttgtactaaagttagtacaaagttaagacacttattttgggacggagggagta 101
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 55 ttagtacaaagttgagtcatctattttagaacggagggagtat 97
||||||||||||||||||| ||||| | |||||||||||||
Sbjct: 62 ttagtacaaagttgagtcacttatttcgggacggagggagtat 104
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 40 aattttgtactacagttagtacaaagttgagtcatctattttagaacggagggagtatt 98
|||||| ||||| ||||||||||||| |||| || |||||| | ||||||||||||||
Sbjct: 45 aattttatactagagttagtacaaag-tgagacacttattttgggacggagggagtatt 102
>RF00906;MIR1122;AACV01007827.1/8284-8145 39947:Oryza sativa
Japonica Group
Length = 140
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 76 tattttagaacggagggagtatt 98
|||||||||||||||||||||||
Sbjct: 25 tattttagaacggagggagtatt 3
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 43 tttgtactacagttagtacaaagttgagtcatctattttagaacggagggagta 96
||||||||| || ||||||||||||||| || |||||| | | ||||||||||
Sbjct: 48 tttgtactagagatagtacaaagttgagacacttattttgggatggagggagta 101
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 gtactacagttagtacaaagttgagt 71
|||||| |||||||||||||||||||
Sbjct: 66 gtactaaagttagtacaaagttgagt 41
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 43 tttgtactacagttagtacaaagttgagtcatctattttagaacggagggagta 96
||||||||| || ||||||||||||||| || |||||| | | ||||||||||
Sbjct: 47 tttgtactagagctagtacaaagttgagacagttattttgggatggagggagta 100
>RF00906;MIR1122;AAAA02003301.1/35949-35819 39946:Oryza sativa
Indica Group
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 76 tattttagaacggagggagtat 97
||||||||||||||||||||||
Sbjct: 25 tattttagaacggagggagtat 4
>RF00906;MIR1122;AP005399.3/486-590 39947:Oryza sativa Japonica
Group
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 76 tattttagaacggagggagtat 97
||||||||||||||||||||||
Sbjct: 25 tattttagaacggagggagtat 4
>RF00906;MIR1122;AP005676.3/140751-140855 39947:Oryza sativa
Japonica Group
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 76 tattttagaacggagggagtat 97
||||||||||||||||||||||
Sbjct: 25 tattttagaacggagggagtat 4
>RF00906;MIR1122;AL713909.5/104301-104440 4530:Oryza sativa (rice)
Length = 140
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tattttagaacggagggagtat 97
||||||||||||||||||||||
Sbjct: 116 tattttagaacggagggagtat 137
