miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 60 tagtacaaagttgagtcacttattttgggacggagggagt 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 75 ttgagtcacttattttgggacg 96
||||||||||||||||||||||
Sbjct: 34 ttgagtcacttattttgggacg 13
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 45 tagtacaaagttgagtcacttattttgggacggagggagt 6
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttggga 94
||||||||||||||||||||||||||||||
Sbjct: 88 tagtacaaagttgagtcacttattttggga 117
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 64 ctagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||||||| |||||||||||||||||| |||||
Sbjct: 60 ctagtacaaagttgagacacttattttgggacggagggagt 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 75 ttgagtcacttattttgggacggaaggagt 104
||||| |||||||||||||||||| |||||
Sbjct: 35 ttgagacacttattttgggacggagggagt 6
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 64 ctagtacaaagttgagtcacttattttgggacggaaggag 103
|||||||||||||||| |||||||||||||||||| ||||
Sbjct: 46 ctagtacaaagttgagacacttattttgggacggagggag 7
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
||||||||||||||||||||||||| |||||||| |||||
Sbjct: 63 tagtacaaagttgagtcacttatttcgggacggagggagt 102
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
||||||||||||||||||||||||||||||| || |||||
Sbjct: 45 tagtacaaagttgagtcacttattttgggacagagggagt 6
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
||||| |||||||||||||||| ||||||||||| |||||
Sbjct: 50 tagtataaagttgagtcacttaatttgggacggagggagt 89
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttgggac 95
|||||||||||||||||||||||||||||||
Sbjct: 57 tagtacaaagttgagtcacttattttgggac 87
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 65 tagtacaaagttgagtcacttattttgggacgga 98
|||||||||||||||||||||| |||||||||||
Sbjct: 45 tagtacaaagttgagtcacttactttgggacgga 12
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 68 tacaaagttgagtcacttattttgggacggaaggagt 104
||||||||||||||||||| ||||||||||| |||||
Sbjct: 42 tacaaagttgagtcacttaatttgggacggagggagt 6
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 74 gttgagtcacttattttgggacggaaggagt 104
||||||||||||| ||||||||||| |||||
Sbjct: 82 gttgagtcacttaatttgggacggagggagt 112
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 64 ctagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||| ||||||||| |||||||||||||||||| |||||
Sbjct: 46 ctagtataaagttgagacacttattttgggacggatggagt 6
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 64 ctagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||||||| || ||||||||||||||| |||||
Sbjct: 60 ctagtacaaagttgagacagttattttgggacggagggagt 100
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 61 tagtacaaagttgagacacttattttgggatggagggagt 100
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 63 actagtacaaagttgagtcacttattttggga 94
||||||||||||||||| ||||||||||||||
Sbjct: 59 actagtacaaagttgagacacttattttggga 90
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 68 tagtacaaagttgagacacttattttgggatggagggagt 107
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||| || |||||||||||||||||| |||||
Sbjct: 61 tagtacaaagttaagacacttattttgggacggagggagt 100
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 75 ttgagtcacttattttgggacggaaggagt 104
||||| ||||||||||||||||||||||||
Sbjct: 35 ttgagacacttattttgggacggaaggagt 6
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 74 gttgagtcacttattttgggacggaaggagt 104
|||||| |||||||||||||||||| |||||
Sbjct: 70 gttgagacacttattttgggacggagggagt 100
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 ttgagtcacttattttgggacggaaggagt 104
|||||||||||||||||||||||| |||||
Sbjct: 82 ttgagtcacttattttgggacggagggagt 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 75 ttgagtcacttattttgggacggaaggagt 104
||||||||||||||||||||| || |||||
Sbjct: 35 ttgagtcacttattttgggacagagggagt 6
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 ttgagtcacttattttgggacggaaggagt 104
|||||||||||||||||||||||| |||||
Sbjct: 81 ttgagtcacttattttgggacggagggagt 110
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 71 aaagttgagtcacttattttgggacggaaggag 103
||||||||| |||||||||||||||||| ||||
Sbjct: 39 aaagttgagacacttattttgggacggagggag 7
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 67 gtacaaagttgagtcacttattttgggacgga 98
|||| |||||||| ||||||||||||||||||
Sbjct: 51 gtactaagttgagacacttattttgggacgga 82
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 64 ctagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||| ||||||||| || ||||||||||||||| |||||
Sbjct: 60 ctagtataaagttgagacagttattttgggacggagggagt 100
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 64 ctagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||||||| || ||||||||||| ||| |||||
Sbjct: 59 ctagtacaaagttgagacagttattttgggatggagggagt 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 67 gtacaaagttgagtcacttattttgggacggaaggagt 104
||||||||||||| || |||||||| |||||| |||||
Sbjct: 43 gtacaaagttgagacagttattttgagacggagggagt 6
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 64 ctagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||| ||||| |||||||||||| ||||| |||||
Sbjct: 46 ctagtacaaatttgagacacttattttggaacggagggagt 6
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 64 ctagtacaaagttgagtcacttattttgg 92
|||||||||||||||| ||||||||||||
Sbjct: 60 ctagtacaaagttgagacacttattttgg 88
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 65 tagtacaaagttg-agtcacttattttgggacggaaggagt 104
||||||||||||| || |||||||||||||||||| |||||
Sbjct: 46 tagtacaaagttggagacacttattttgggacggagggagt 6
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 74 gttgagtcacttattttgggacggaaggagt 104
|||||| |||||||||||||| |||||||||
Sbjct: 51 gttgaggcacttattttgggagggaaggagt 81
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 64 ctagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||| ||||||||| || ||||||||||||||| |||||
Sbjct: 60 ctagtataaagttgagacagttattttgggacggagggagt 100
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 68 tacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||| || ||||||||||||||| |||||
Sbjct: 64 tacaaagttgagacatttattttgggacggagggagt 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 75 ttgagtcacttattttgggacggaaggagt 104
||||| |||||||||||||||||| |||||
Sbjct: 35 ttgagacacttattttgggacggagggagt 6
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 68 tacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||| || ||||||||||||||| |||||
Sbjct: 64 tacaaagttgagacatttattttgggacggagggagt 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 75 ttgagtcacttattttgggacggaaggagt 104
||||| |||||||||||||||||| |||||
Sbjct: 35 ttgagacacttattttgggacggagggagt 6
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
||||||||||| ||| |||||||||||||||||| |||||
Sbjct: 61 tagtacaaagt-gagacacttattttgggacggagggagt 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 74 gttgagtcacttattttgggacggaaggagt 104
|||||| |||||||||||||||||| |||||
Sbjct: 36 gttgagacacttattttgggacggagggagt 6
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
||||||||| ||||| || ||||||||||||||| |||||
Sbjct: 109 tagtacaaacttgagacagttattttgggacggagggagt 148
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
||||||||||||| |||| |||||||| |||||||||||
Sbjct: 45 tagtacaaagttgggtcatctattttggaacggaaggagt 6
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||||||||| |||||||| ||||| |||||
Sbjct: 45 tagtacaaagttgagtcatctattttggaacggagggagt 6
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 65 tagtacaaagttgagtcacttattttgggacggaaggagt 104
|||||||||||||||||| |||||||| ||||| |||||
Sbjct: 45 tagtacaaagttgagtcatctattttggaacggagggagt 6
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 68 tacaaagttgagtcacttattttgggacgga 98
|||||||||||| || |||||||||||||||
Sbjct: 64 tacaaagttgagacagttattttgggacgga 94
>RF00906;MIR1122;DQ106595.1/374-276 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 65 tagtacaaagttgagtcacttattttg 91
|||||||||||||| ||||||||||||
Sbjct: 45 tagtacaaagttgaatcacttattttg 19
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 agtcacttattttgggacggaaggagt 104
||||||||||||||||||||| |||||
Sbjct: 84 agtcacttattttgggacggagggagt 110
