miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 111 bits (56), Expect = 1e-24
Identities = 68/72 (94%)
Strand = Plus / Minus
Query: 1 gttccaaaatagatgactcaactttgtattaactttatactaaagttagtataaagttga 60
||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||||||
Sbjct: 91 gttccaaaatagatgacccaactttttactaactttatattaaagttagtataaagttga 32
Query: 61 gtcatctatttt 72
||||||||||||
Sbjct: 31 gtcatctatttt 20
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1 gttccaaaatagatgactcaactttgtattaactttatactaaagttagtataaagttga 60
||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||
Sbjct: 15 gttccaaaatagatgactcaactttatactaactttaatataaagttagtaaaaagttgg 74
Query: 61 gtcatctatttt 72
||||||||||||
Sbjct: 75 gtcatctatttt 86
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 105 bits (53), Expect = 8e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 gttccaaaatagatgactcaactttgtattaactttatactaaagttagtataaagttga 60
|||||||||||||||||||||||||||| ||| ||| ||||| |||||||| ||||||||
Sbjct: 15 gttccaaaatagatgactcaactttgtactaattttgtactatagttagtacaaagttga 74
Query: 61 gtcatctatttta 73
|||||||||||||
Sbjct: 75 gtcatctatttta 87
Score = 73.8 bits (37), Expect = 3e-13
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 1 gttccaaaatagatgactcaactttgtattaacttta-tactaaagttagtataaagttg 59
|||| ||||||||||||||||||||||| ||||| || ||| ||| |||||| |||||||
Sbjct: 91 gttctaaaatagatgactcaactttgtactaactatagtac-aaaattagtacaaagttg 33
Query: 60 agtcatctatttt 72
|||||||||||||
Sbjct: 32 agtcatctatttt 20
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 69.9 bits (35), Expect = 4e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 gttccaaaatagatgactcaactttgtattaactttata 39
||||||||||||||||| |||||||||||||||||||||
Sbjct: 15 gttccaaaatagatgacccaactttgtattaactttata 53
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 5 caaaatagatgactcaactttgtattaacttta 37
||||||||||||| |||||||||||||||||||
Sbjct: 102 caaaatagatgacccaactttgtattaacttta 70
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 31 aactttatactaaagttagtataaagttgagtcatctatttt 72
|||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 34 aactttgtactaaagttagtacaaagttgagtcatctatttt 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 2 ttccaaaatagatgactcaactttgtattaacttta 37
||||||||||||||||||||||||||| ||||||||
Sbjct: 79 ttccaaaatagatgactcaactttgtactaacttta 44
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 31 aactttatactaaagttagtataaagttgagtcatctatttt 72
|||||| |||||| |||||| ||||||| ||||||||||||
Sbjct: 61 aactttgtactaactttagtacaaagttgggtcatctatttt 20
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 31 aactttatactaaagttagtataaagttgagtcatctatttt 72
|||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 34 aactttgtactaaagttagtacaaagttgagtcatctatttt 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 5 caaaatagatgactcaactttgtattaacttta 37
|||||||||||||||||||||||| ||||||||
Sbjct: 76 caaaatagatgactcaactttgtactaacttta 44
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 31 aactttatactaaagttagtataaagttgagtcatctatttt 72
|||||| |||||| |||||| ||||||| ||||||||||||
Sbjct: 61 aactttgtactaactttagtacaaagttgggtcatctatttt 20
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 31 aactttatactaaagttagtataaagttgagtcatctatttt 72
||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 61 aactttacactaaagttagtacaaagttgagtcatctatttt 20
Score = 65.9 bits (33), Expect = 7e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gttccaaaatagatgactcaactttgtattaacttta 37
|||||||||||||||||||||||||||| ||||||||
Sbjct: 15 gttccaaaatagatgactcaactttgtactaacttta 51
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 31 aactttatactaaagttagtataaagttgagtcatctatttt 72
|||||| |||||| ||||| |||||||| ||||||||||||
Sbjct: 34 aactttgtactaactttagtgtaaagttgggtcatctatttt 75
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 31 aactttatactaaagttagtataaagttgagtca 64
|||||| |||||||||||||||||||||||||||
Sbjct: 34 aactttgtactaaagttagtataaagttgagtca 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 31 aactttatactaaagttagtataaagttgagtca 64
||||||||||||| |||||| ||||||||||||
Sbjct: 61 aactttatactaactttagtacaaagttgagtca 28
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 56.0 bits (28), Expect = 6e-08
Identities = 53/61 (86%), Gaps = 4/61 (6%)
Strand = Plus / Minus
Query: 4 ccaaaatagatgactcaactttgtattaactttatactaaagttagtataaagttgagtc 63
|||||||| ||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct: 84 ccaaaataagtgactcaactttgtactaactt----ctaaagttagtacaaagttgagtc 29
Query: 64 a 64
|
Sbjct: 28 a 28
Score = 44.1 bits (22), Expect = 2e-04
Identities = 44/51 (86%), Gaps = 4/51 (7%)
Strand = Plus / Plus
Query: 14 tgactcaactttgtattaactttatactaaagttagtataaagttgagtca 64
||||||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct: 28 tgactcaactttgtactaacttta----gaagttagtacaaagttgagtca 74
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 56.0 bits (28), Expect = 6e-08
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 14 tgactcaactttgtattaactttatactaaagttagtataaagttgag 61
||||||||||||||| ||| ||| ||||||| |||||||||||||||
Sbjct: 80 tgactcaactttgtactaattttgtactaaaaatagtataaagttgag 33
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 31 aactttatactaaagttagtataaagttgagtcatctatttta 73
|||||| |||||||| ||||| ||||||||||| |||||||||
Sbjct: 34 aactttgtactaaagatagtacaaagttgagtcgtctatttta 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 caaaatagatgactcaactttgta 28
||||||||||||||||||||||||
Sbjct: 19 caaaatagatgactcaactttgta 42
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 46 ttagtataaagttgagtcatctatttt 72
|||||| ||||||||||||||||||||
Sbjct: 46 ttagtacaaagttgagtcatctatttt 20
Score = 42.1 bits (21), Expect = 0.001
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1 gttccaaaatagatgactcaactttgtattaacttta 37
|||| |||||||| |||||||||||||| || |||||
Sbjct: 80 gttctaaaatagacgactcaactttgtactatcttta 44
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gttccaaaatagatgactcaactttg 26
||||||||||||||||||||||||||
Sbjct: 15 gttccaaaatagatgactcaactttg 40
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1 gttccaaaatagatgactcaactttg 26
||||||||||||||||||||||||||
Sbjct: 66 gttccaaaatagatgactcaactttg 41
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 4 ccaaaatagatgactcaactttgtattaacttta 37
|||||||| ||| |||||||||||||||||||||
Sbjct: 88 ccaaaataaatgtctcaactttgtattaacttta 55
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 4 ccaaaatagatgactcaactttgtattaacttta 37
|||||||| ||| |||||||||||||||||||||
Sbjct: 88 ccaaaataaatgtctcaactttgtattaacttta 55
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 31 aactttatactaaagttagtataaagttgagtcatctatttt 72
|||||| ||||||||||| || ||||||||| ||| ||||||
Sbjct: 45 aactttgtactaaagttaatacaaagttgagacatttatttt 86
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 gttccaaaatagatgactcaactttgta 28
||||||||||||||||| ||||||||||
Sbjct: 54 gttccaaaatagatgacccaactttgta 27
>RF00906;MIR1122;AF427791.1/40179-40064 4513:Hordeum vulgare
Length = 116
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 29 ttaactttatactaaagttagtataaa 55
|||||||||||||||| ||||||||||
Sbjct: 43 ttaactttatactaaaattagtataaa 69
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 31 aactttatactaaagttagtataaagttgag 61
|||||| |||||||||||||| |||||||||
Sbjct: 52 aactttgtactaaagttagtacaaagttgag 82
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 46.1 bits (23), Expect = 6e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 4 ccaaaatagatgactcaactttgtattaactttatacta 42
|||||||| ||||||||||||||| ||||||| |||||
Sbjct: 18 ccaaaataagtgactcaactttgtactaactttgtacta 56
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 4 ccaaaatagatgactcaactttgtattaacttta 37
|||||||| ||||||||||||||| ||||||||
Sbjct: 115 ccaaaataagtgactcaactttgtactaacttta 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 ctaaagttagtataaagttgagtca 64
|||||||||||| ||||||||||||
Sbjct: 81 ctaaagttagtacaaagttgagtca 105
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 38 tactaaagttagtataaagttgagt 62
|||||||||||||| ||||||||||
Sbjct: 65 tactaaagttagtacaaagttgagt 41
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 aactttatactaaagttagtataaagttgagtc 63
|||||| ||||||||||||| |||||||||||
Sbjct: 71 aactttgtactaaagttagtgcaaagttgagtc 39
