miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 10 ctactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaagttaa 69
|||||||||||| || |||||||||||| ||||||| ||||| || ||| ||||| |||
Sbjct: 102 ctactccctccgttctaaaatagatgactcaactttgtactaactatagtacaaaattag 43
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||||||||||||||||||||||
Sbjct: 42 tacaaagttgagtcatctattttggaacggagggagt 6
Score = 81.8 bits (41), Expect = 2e-15
Identities = 85/97 (87%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatactagctctaggacaa-agttaa 69
||||||||||| ||||||||||||||| ||||||| ||||| | | | || | |||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttgtactaatttt-gtactatagttag 63
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
||||||||||||||||||||||| |||||||||||||
Sbjct: 64 tacaaagttgagtcatctattttagaacggagggagt 100
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 111 bits (56), Expect = 2e-24
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaagttaat 70
||||||||||| ||||||||||||||| ||||||||||||| || || | ||||||| |
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttatactaactttaatataaagttagt 64
Query: 71 acaaagttgagtcatctattttggaacggagggagt 106
| ||||||| ||||||||||||||||||||||||||
Sbjct: 65 aaaaagttgggtcatctattttggaacggagggagt 100
Score = 103 bits (52), Expect = 5e-22
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaagttaat 70
||||||||||| ||||||||||||||| ||||||| ||||| || || ||||||| |
Sbjct: 101 tactccctccgttccaaaatagatgacccaactttttactaactttatattaaagttagt 42
Query: 71 acaaagttgagtcatctattttggaacggagggagt 106
| ||||||||||||||||||||||||||||||||||
Sbjct: 41 ataaagttgagtcatctattttggaacggagggagt 6
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 85.7 bits (43), Expect = 1e-16
Identities = 82/97 (84%), Gaps = 11/97 (11%)
Strand = Plus / Minus
Query: 10 ctactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaagttaa 69
|||||||||||| ||||||||||||||| |||||||| |||| ||||||
Sbjct: 91 ctactccctccgttccaaaatagatgacccaactttacacta-----------aagttag 43
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||||||||||||||||||||||
Sbjct: 42 tacaaagttgagtcatctattttggaacggagggagt 6
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 73 aaagttgagtcatctattttggaacggagggagtggtag 111
||||||| |||||||||||||||||||||||||| ||||
Sbjct: 56 aaagttgggtcatctattttggaacggagggagtagtag 94
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatacta 51
||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttgtacta 45
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagt 106
||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 45 aaagttagtacaaagttgagtcatctattttggaatggagggagt 89
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaagtt 67
|||||||||| ||||||||||||||| ||||||| ||||| || ||| ||||||||
Sbjct: 90 tactccctccattccaaaatagatgactcaactttgtactaactttagtacaaagtt 34
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 70 tacaaagttgagtcatctattttggaacggagg 102
|||||||||| |||||||||||||||| |||||
Sbjct: 42 tacaaagttgggtcatctattttggaatggagg 10
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 50 aaagttaatacaaagttgggtcatctattttggaacggaaggagt 6
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 71 aaagttaatacaaagttgggtcatctattttgaaacggaaggagt 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 tactccctccggtccaaaatagatgacgcaacttt 45
|||||| |||| ||||||||||||||| |||||||
Sbjct: 5 tactccttccgttccaaaatagatgacccaacttt 39
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 72 caaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||||||||||||||||||||
Sbjct: 40 caaagttgagtcatctattttggaacggagggagt 6
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 72 caaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||||||||||||||||||||
Sbjct: 41 caaagttgagtcatctattttggaacggagggagt 75
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 11 tactccctccggtccaaaatagatgacgcaacttt 45
||||||||||| ||||||||||||||| |||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaacttt 39
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 12 actccctccggtccaaaatagatgacgcaacttt 45
|||||||||| ||||||||||||||| |||||||
Sbjct: 75 actccctccgttccaaaatagatgactcaacttt 42
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagtggtag 111
|||||||||||||||||||| ||| |||||||| ||||||||||| ||||
Sbjct: 56 aaagttaatacaaagttgagacatttattttgggacggagggagtagtag 105
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagtggtag 111
|||||||||||||||||||| ||| |||||||| ||||||||||| ||||
Sbjct: 56 aaagttaatacaaagttgagacatttattttgggacggagggagtagtag 105
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||| ||||||||||||||||||||||||||
Sbjct: 27 tacaaagttgggtcatctattttggaacggagggagt 63
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatacta 51
||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 64 tactccctccgttccaaaatagatgacccaactttgtacta 24
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagg 102
||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 45 aaagttagtacaaagttgagtcatctattttgaaacggagg 85
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||| |||||||||||||||||||| |||||
Sbjct: 42 tacaaagttgggtcatctattttggaacggaaggagt 6
Score = 50.1 bits (25), Expect = 6e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaagtt 67
|||| |||||| | ||||||||||||| ||||||| ||||| || ||| ||||||||
Sbjct: 90 tacttcctccgtttcaaaatagatgactcaactttgtactaactttagtacaaagtt 34
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 60 acaaagttaatacaaagttgagtcatctattttggaacggagggagt 106
||||||||| ||||||||||||||| |||||||| |||||||||||
Sbjct: 52 acaaagttagtacaaagttgagtcacttattttgggacggagggagt 6
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 60.0 bits (30), Expect = 7e-09
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 10 ctactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaagtt 67
|||||||||||| | ||||||| ||| | ||||||| |||||||||||| ||||||||
Sbjct: 102 ctactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagtt 45
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||| ||| ||||||| ||||||||||||
Sbjct: 64 tacaaagttgagacatttattttgaaacggagggagt 100
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||| |||||||| |||||||||||||
Sbjct: 53 tacaaagttgagtcgtctattttagaacggagggagt 89
Score = 50.1 bits (25), Expect = 6e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaagtt 67
||||||||||| || |||||||| ||| ||||||| ||||| || ||| ||||||||
Sbjct: 90 tactccctccgttctaaaatagacgactcaactttgtactatctttagtacaaagtt 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 70 tacaaagttgagtcatctattttg 93
||||||||||||||||||||||||
Sbjct: 42 tacaaagttgagtcatctattttg 19
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 39 caactttatactagctctaggacaaagttaatacaaagttgagtcatctattttggaacg 98
||||||||||||| | ||| ||||| ||| ||||||||||||||| ||||| || |||
Sbjct: 35 caactttatactatttttagtacaaaattagtacaaagttgagtcacttatttcgggacg 94
Query: 99 gagggagt 106
||||||||
Sbjct: 95 gagggagt 102
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 39 caactttatactagctctaggacaaagttaatacaaagttgagtcatctattttggaacg 98
||||||| |||||||||||| |||||||| |||||||||||| || ||||||| |||
Sbjct: 72 caactttgtactagctctagtacaaagtt-gtacaaagttgagacagttattttgagacg 14
Query: 99 gagggagt 106
||||||||
Sbjct: 13 gagggagt 6
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
||||||||||||||| |||||||| |||||||||||
Sbjct: 63 tacaaagttgagtcacttattttgggacggagggagt 99
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaagtt 67
||||||||||| ||||||||| || | ||| ||| |||||||||||| ||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagtt 61
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 80 agtcatctattttggaacggagggagt 106
||||| |||||||||||||||||||||
Sbjct: 32 agtcaactattttggaacggagggagt 6
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 80 agtcatctattttggaacggagggagt 106
||||||||| |||||||||||||||||
Sbjct: 32 agtcatctaatttggaacggagggagt 6
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 11 tactccctccggtccaaaatagatgacgcaactttatactagctctaggacaaa 64
||||||||||| |||||||| || | ||||||| |||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaa 48
