miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 139 bits (70), Expect = 9e-33
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 10 ctactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagttaa 69
||||||||||||||| | |||||||||| ||||||| |||||||| ||||||||| |||
Sbjct: 102 ctactccctccgttctaaaatagatgactcaactttgtactaactatagtacaaaattag 43
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||||||||||||||||||||||
Sbjct: 42 tacaaagttgagtcatctattttggaacggagggagt 6
Score = 107 bits (54), Expect = 3e-23
Identities = 88/97 (90%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaa-agttaa 69
|||||||||||||||| |||||||||| ||||||| |||||| ||| |||| | |||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttgtactaatttt-gtactatagttag 63
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
||||||||||||||||||||||| |||||||||||||
Sbjct: 64 tacaaagttgagtcatctattttagaacggagggagt 100
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 137 bits (69), Expect = 4e-32
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagttaat 70
|||||||||||||||| |||||||||| ||||||||||||||||||| || ||||||| |
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttatactaactttaatataaagttagt 64
Query: 71 acaaagttgagtcatctattttggaacggagggagt 106
| ||||||| ||||||||||||||||||||||||||
Sbjct: 65 aaaaagttgggtcatctattttggaacggagggagt 100
Score = 121 bits (61), Expect = 2e-27
Identities = 87/96 (90%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagttaat 70
|||||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| |
Sbjct: 101 tactccctccgttccaaaatagatgacccaactttttactaactttatattaaagttagt 42
Query: 71 acaaagttgagtcatctattttggaacggagggagt 106
| ||||||||||||||||||||||||||||||||||
Sbjct: 41 ataaagttgagtcatctattttggaacggagggagt 6
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 87.7 bits (44), Expect = 3e-17
Identities = 82/97 (84%), Gaps = 11/97 (11%)
Strand = Plus / Minus
Query: 10 ctactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagttaa 69
||||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 91 ctactccctccgttccaaaatagatgacccaactttacactaa-----------agttag 43
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||||||||||||||||||||||
Sbjct: 42 tacaaagttgagtcatctattttggaacggagggagt 6
Score = 77.8 bits (39), Expect = 3e-14
Identities = 85/101 (84%), Gaps = 11/101 (10%)
Strand = Plus / Plus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagttaat 70
|||||||||||||||| |||||||||| ||||||| ||||||||||||| ||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttgtactaactttagt-----gt---- 55
Query: 71 acaaagttgagtcatctattttggaacggagggagtggtag 111
||||||| |||||||||||||||||||||||||| ||||
Sbjct: 56 --aaagttgggtcatctattttggaacggagggagtagtag 94
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 83.8 bits (42), Expect = 5e-16
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct: 90 tactccctccattccaaaatagatgactcaactttgtactaactttagtacaaagtt 34
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagt 106
||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 45 aaagttagtacaaagttgagtcatctattttggaatggagggagt 89
Score = 60.0 bits (30), Expect = 7e-09
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||| ||||| ||||| |||||||||| ||||||| |||||| |||||||||||||
Sbjct: 5 tacttcctccattccaaaatagatgacccaactttgtactaaagttagtacaaagtt 61
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 75.8 bits (38), Expect = 1e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||| |||||||| || |||||||||| ||||||| |||||||||||||||||||||
Sbjct: 90 tacttcctccgtttcaaaatagatgactcaactttgtactaactttagtacaaagtt 34
Score = 67.9 bits (34), Expect = 3e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||| ||||||||| |||||||||| ||||||| |||||| |||||||||||||
Sbjct: 5 tactccttccgttccaaaatagatgacccaactttgtactaaagttagtacaaagtt 61
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagg 102
||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 45 aaagttagtacaaagttgagtcatctattttgaaacggagg 85
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 50 aaagttaatacaaagttgggtcatctattttggaacggaaggagt 6
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 71 aaagttaatacaaagttgggtcatctattttgaaacggaaggagt 115
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 71.9 bits (36), Expect = 2e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 39 caactttatactaactttagtacaaagttaatacaaagttgagtcatctattttggaacg 98
||||||||||||| ||||||||||| ||| ||||||||||||||| ||||| || |||
Sbjct: 35 caactttatactatttttagtacaaaattagtacaaagttgagtcacttatttcgggacg 94
Query: 99 gagggagt 106
||||||||
Sbjct: 95 gagggagt 102
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 72 caaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||||||||||||||||||||
Sbjct: 40 caaagttgagtcatctattttggaacggagggagt 6
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 72 caaagttgagtcatctattttggaacggagggagt 106
|||||||||||||||||||||||||||||||||||
Sbjct: 41 caaagttgagtcatctattttggaacggagggagt 75
Score = 56.0 bits (28), Expect = 1e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 11 tactccctccgttccanaatagatgacgcaacttt 45
|||||||||||||||| |||||||||| |||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaacttt 39
Score = 54.0 bits (27), Expect = 4e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 12 actccctccgttccanaatagatgacgcaacttt 45
||||||||||||||| |||||||||| |||||||
Sbjct: 75 actccctccgttccaaaatagatgactcaacttt 42
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 69.9 bits (35), Expect = 7e-12
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 56 tagtacaaagttaatacaaagttgagtcatctattttggaacggagggagt 106
||||||||||||| ||||||||||||||| |||||||| |||||||||||
Sbjct: 56 tagtacaaagttagtacaaagttgagtcacttattttgggacggagggagt 6
Score = 46.1 bits (23), Expect = 1e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaacttt 56
|||||||||||| ||| |||| |||| ||||||| ||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaactttgtactaacttt 50
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 67.9 bits (34), Expect = 3e-11
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||||||||||| | |||||| ||| ||||||| ||||| |||||||||||||||
Sbjct: 90 tactccctccgttctaaaatagacgactcaactttgtactatctttagtacaaagtt 34
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||||| |||||||| |||||||||||||
Sbjct: 53 tacaaagttgagtcgtctattttagaacggagggagt 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 70 tacaaagttgagtcatctattttg 93
||||||||||||||||||||||||
Sbjct: 42 tacaaagttgagtcatctattttg 19
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 67.9 bits (34), Expect = 3e-11
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||||||||| ||| | || |||| |||||||||||||||||||||||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaagtt 34
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagtggtag 111
|||||||||||||||||||| ||| |||||||| ||||||||||| ||||
Sbjct: 56 aaagttaatacaaagttgagacatttattttgggacggagggagtagtag 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 10 ctactccctccgttccanaatagatgacgcaactttatactaactttagtacaa 63
||||||||||||| ||| |||| ||| | ||||||| || ||||||||||||||
Sbjct: 102 ctactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaa 49
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 62 aaagttaatacaaagttgagtcatctattttggaacggagggagtggtag 111
|||||||||||||||||||| ||| |||||||| ||||||||||| ||||
Sbjct: 56 aaagttaatacaaagttgagacatttattttgggacggagggagtagtag 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 10 ctactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
||||||||||||| ||| |||| ||| | ||||||| || ||||||||||||||||||
Sbjct: 102 ctactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagtt 45
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||| ||||||||||||||||||||||||||
Sbjct: 27 tacaaagttgggtcatctattttggaacggagggagt 63
Score = 60.0 bits (30), Expect = 7e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatacta 51
|||||||||||||||| |||||||||| ||||||| |||||
Sbjct: 64 tactccctccgttccaaaatagatgacccaactttgtacta 24
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 10 ctactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||||||||||| || |||| ||| | ||||||| ||||| || ||||||||||||
Sbjct: 102 ctactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagtt 45
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
|||||||||||| ||| ||||||| ||||||||||||
Sbjct: 64 tacaaagttgagacatttattttgaaacggagggagt 100
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 52.0 bits (26), Expect = 2e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||||||||| ||| |||| || | ||| ||| |||||||||||||||||||||
Sbjct: 149 tactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagtt 93
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||||||| | ||| |||| || | ||||||| |||||||||||||||||||||
Sbjct: 108 tactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagtt 52
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||||||||| ||| |||| || | |||||| |||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagtt 45
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 70 tacaaagttgagtcatctattttggaacggagggagt 106
||||||||||||||| |||||||| |||||||||||
Sbjct: 63 tacaaagttgagtcacttattttgggacggagggagt 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||||||||| ||| |||| |||| ||||||| |||||| ||||| |||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaactttgtactaaagttagtgcaaagtt 44
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 79/96 (82%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagttaat 70
|||||||||| | ||| |||| || | ||||||| ||||| || |||||||||||| |
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagtt-gt 42
Query: 71 acaaagttgagtcatctattttggaacggagggagt 106
||||||||||| || ||||||| |||||||||||
Sbjct: 41 acaaagttgagacagttattttgagacggagggagt 6
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 52/61 (85%), Gaps = 4/61 (6%)
Strand = Plus / Plus
Query: 34 tgacgcaactttatactaactttagtacaaagttaatacaaagttgagtcatctattttg 93
|||| ||||||| |||||||||||| |||||| ||||||||||||||| |||||||
Sbjct: 28 tgactcaactttgtactaactttag----aagttagtacaaagttgagtcacttattttg 83
Query: 94 g 94
|
Sbjct: 84 g 84
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 39 caactttatactaactttagtacaaagttaatacaaagttgagtcatctattttggaacg 98
||||||| ||||||||||||||| ||||| | || |||||||| |||||||| |||
Sbjct: 44 caactttgtactaactttagtacgaagttgagtcacttttgagtcacttattttgggacg 103
Query: 99 gagggagt 106
||||||||
Sbjct: 104 gagggagt 111
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 80 agtcatctattttggaacggagggagt 106
||||| |||||||||||||||||||||
Sbjct: 32 agtcaactattttggaacggagggagt 6
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 80 agtcatctattttggaacggagggagt 106
||||||||| |||||||||||||||||
Sbjct: 32 agtcatctaatttggaacggagggagt 6
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 atgctactccctccgttccanaata 31
|||||||||||||||||||| ||||
Sbjct: 1 atgctactccctccgttccaaaata 25
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 11 tactccctccgttccanaatagatgacgcaactttatactaactttagtacaaagtt 67
|||||||||||||||| |||| || | ||| ||| ||||| || ||||||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagtt 61
