miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 115 bits (58), Expect = 1e-25
Identities = 70/74 (94%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 90 tactccctccattccaaaatagatgactcaactttgtactaactttagtacaaagttggg 31
Query: 71 tcatctattttgga 84
||||||||||||||
Sbjct: 30 tcatctattttgga 17
Score = 97.6 bits (49), Expect = 3e-20
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttgg 69
||||| ||||| ||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 4 gtacttcctccattccaaaatagatgacccaactttgtactaaagttagtacaaagttga 63
Query: 70 gtcatctattttggagcgaagggagtata 98
||||||||||||||| | ||||||||||
Sbjct: 64 gtcatctattttggaatggagggagtata 92
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 115 bits (58), Expect = 1e-25
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttgtactaactttagtgtaaagttggg 64
Query: 71 tcatctattttggagcgaagggagta 96
|||||||||||||| || ||||||||
Sbjct: 65 tcatctattttggaacggagggagta 90
Score = 101 bits (51), Expect = 2e-21
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||||||||||||||| |||||||| | ||| |||||||||||||| |
Sbjct: 90 tactccctccgttccaaaatagatgacccaactttacactaaagttagtacaaagttgag 31
Query: 71 tcatctattttggagcgaagggagtat 97
|||||||||||||| || |||||||||
Sbjct: 30 tcatctattttggaacggagggagtat 4
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 107 bits (54), Expect = 3e-23
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||| |||||||| |||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 90 tacttcctccgtttcaaaatagatgactcaactttgtactaactttagtacaaagttggg 31
Query: 71 tcatctattttgga 84
||||||||||||||
Sbjct: 30 tcatctattttgga 17
Score = 97.6 bits (49), Expect = 3e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttgg 69
||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 4 gtactccttccgttccaaaatagatgacccaactttgtactaaagttagtacaaagttga 63
Query: 70 gtcatctattttg 82
|||||||||||||
Sbjct: 64 gtcatctattttg 76
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 87.7 bits (44), Expect = 3e-17
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttggg 70
|||||||||||||| |||||||| || |||||||||| || |||||||||||||||| |
Sbjct: 90 tactccctccgttctaaaatagacgactcaactttgtactatctttagtacaaagttgag 31
Query: 71 tcatctattttg 82
||||||||||||
Sbjct: 30 tcatctattttg 19
Score = 56.0 bits (28), Expect = 9e-08
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 25 caaaatagatgaaccaactttgtattaactttagtacaaagttgggtcatctattttgga 84
|||||||||||| |||||||||| ||| ||||||||||||| ||| |||||||| ||
Sbjct: 19 caaaatagatgactcaactttgtactaaagatagtacaaagttgagtcgtctattttaga 78
Query: 85 gcgaagggagta 96
|| ||||||||
Sbjct: 79 acggagggagta 90
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 79.8 bits (40), Expect = 6e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccaaaatagatgaaccaactttgtattaacttta 57
||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4 gtactccttccgttccaaaatagatgacccaactttgtattaacttta 51
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 10 gtactccctccgttccaaaatagatgaaccaactttgtattaacttta 57
||||||| |||||| |||||||||||| ||||||||||||||||||||
Sbjct: 117 gtactccttccgtttcaaaatagatgacccaactttgtattaacttta 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 59 tacaaagttgggtcatctattttgga 84
||||||||||||||||||||||||||
Sbjct: 42 tacaaagttgggtcatctattttgga 17
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 tacaaagttgggtcatctattttg 82
||||||||||||||||||||||||
Sbjct: 79 tacaaagttgggtcatctattttg 102
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttg 68
|||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagttg 44
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 10 gtactccctccgttccaaaatagatgaaccaactttgtattaacttta 57
||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct: 102 gtactccctccgttccaaaatagatgacccaactttttactaacttta 55
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagtt 67
||||||||||||||||||||||||||| ||||||| || |||||||| || ||||||
Sbjct: 4 gtactccctccgttccaaaatagatgactcaactttatactaactttaatataaagtt 61
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 69.9 bits (35), Expect = 6e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 56 tagtacaaagttgggtcatctattttggagcgaagggagtata 98
||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 24 tagtacaaagttgggtcatctattttggaacggagggagtata 66
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgta 48
|||||||||||||||||||||||||| |||||||||||
Sbjct: 64 tactccctccgttccaaaatagatgacccaactttgta 27
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatag 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatag 26
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttg 68
|||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggttg 44
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaa 64
|||||||||||||| ||||||||||| |||||||||| ||||| |||||||||
Sbjct: 101 tactccctccgttctaaaatagatgactcaactttgtactaactatagtacaaa 48
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccaaaatagatgaaccaactttgta 48
||||||||||||||||||||||||||| ||||||||||
Sbjct: 4 gtactccctccgttccaaaatagatgactcaactttgta 42
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 60.0 bits (30), Expect = 6e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 10 gtactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttgg 69
||||||||||||| ||||| || ||| ||||||| || |||||||||||||||||||
Sbjct: 91 gtactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaagttga 32
Query: 70 gtcatctattttgg 83
|||| ||||||||
Sbjct: 31 gtcacttattttgg 18
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttg 46
|||||||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttg 40
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 12 actccctccgttccaaaatagatgaaccaactttg 46
||||||||||||||||||||||||| ||||||||
Sbjct: 75 actccctccgttccaaaatagatgactcaactttg 41
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 61 caaagttgggtcatctattttggagcgaagggagta 96
|||||||| ||||||||||||||| || ||||||||
Sbjct: 40 caaagttgagtcatctattttggaacggagggagta 5
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 61 caaagttgggtcatctattttggagcgaagggagt 95
|||||||| ||||||||||||||| || |||||||
Sbjct: 41 caaagttgagtcatctattttggaacggagggagt 75
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 39 caactttgtattaactttagtacaaagttgggtcatctattttggagcgaagggagtata 98
|||||||| | ||||||||||||||||||| |||| |||||||| || ||||||||||
Sbjct: 43 caactttgcactaactttagtacaaagttgagtcacttattttgggacggagggagtata 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttg 68
|||||||||||| |||||||| ||| |||||||||| ||| ||||| ||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaactttgtactaaagttagtgcaaagttg 43
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 10 gtactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttg 68
||||||||||||| |||||||| || ||||||||| |||||||||||||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttg 44
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttg 68
|||||||||||| |||||||| || ||| |||||| |||||||||||||||||||
Sbjct: 149 tactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagttg 92
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttg 68
||||||||||||| ||||||| ||| |||||||||| || || |||||||||||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagttg 44
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 39 caactttgtattaactttagtacaaagttg 68
|||||||||| |||||||||||||||||||
Sbjct: 80 caactttgtactaactttagtacaaagttg 51
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccaaaatag 32
|||||||||||||||||||||||
Sbjct: 4 gtactccctccgttccaaaatag 26
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 39 caactttgtattaactttagtacaaagttgggtca 73
|||||||||| |||||||||||| |||||| ||||
Sbjct: 44 caactttgtactaactttagtacgaagttgagtca 78
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 gtactccctccgttccaaaata 31
||||||||||||||||||||||
Sbjct: 133 gtactccctccgttccaaaata 112
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 39 caactttgtattaactttagtacaaagttg 68
||||||||||||| || |||||||||||||
Sbjct: 73 caactttgtattagctctagtacaaagttg 44
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaactttagtacaaagttg 68
||||||||||||||||||||| || ||| |||||| || || |||||||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagttg 62
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatgaaccaactttgtattaacttt 56
|||||||||||| |||||||| ||| |||||||||| |||||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaactttgtactaacttt 50
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgttccaaaatagatga 36
|||||||||||||||||| |||||||
Sbjct: 5 tactccctccgttccaaattagatga 30
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 tactccctccgttccaaaatagatga 36
|||||||||||||||||| |||||||
Sbjct: 131 tactccctccgttccaaattagatga 106
>RF00906;MIR1122;AACV01013954.1/10702-10856 39947:Oryza sativa
Japonica Group
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 10 gtactccctccgttccaaaatagatgaacc 39
||||||||||||| |||||||||| |||||
Sbjct: 152 gtactccctccgtcccaaaatagaagaacc 123
