miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
           (sorghum)
          Length = 81

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 284 acttataatttgggacggagggagta 309
           ||||||||||||||||||||||||||
Sbjct: 52  acttataatttgggacggagggagta 77




>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
           (sorghum)
          Length = 138

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 284 acttataatttgggacggagggagtatga 312
           ||||||||||||| |||||||||||||||
Sbjct: 30  acttataatttggaacggagggagtatga 2




>RF00906;MIR1122;AC210491.1/95749-95858 4538:Oryza glaberrima
           (African rice)
          Length = 110

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 283 tacttataatttgggacggagggagtat 310
           |||||||| |||||||||||||||||||
Sbjct: 80  tacttatattttgggacggagggagtat 107




>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 283 tacttataatttgggacggagggagtat 310
           |||||||| |||||||||||||||||||
Sbjct: 31  tacttatattttgggacggagggagtat 4




>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
           (sorghum)
          Length = 141

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 284 acttataatttgggacggagggagtat 310
           ||||||||||||| |||||||||||||
Sbjct: 30  acttataatttggaacggagggagtat 4




>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
           (sorghum)
          Length = 152

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 284 acttataatttgggacggagggagtat 310
           ||||||||||||| |||||||||||||
Sbjct: 30  acttataatttggaacggagggagtat 4




>RF00906;MIR1122;AAAA02026282.1/2845-2975 39946:Oryza sativa Indica
           Group
          Length = 131

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 280 aggtacttataatttgggacggagggagtat 310
           |||| |||||| |||||||||||||||||||
Sbjct: 34  aggttcttatattttgggacggagggagtat 4




>RF00906;MIR1122;AC111016.2/25572-25452 39947:Oryza sativa Japonica
           Group
          Length = 121

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 280 aggtacttataatttgggacggagggagtat 310
           |||| |||||| |||||||||||||||||||
Sbjct: 88  aggttcttatattttgggacggagggagtat 118




>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
          Length = 125

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 284 acttataatttgggacggagggagtat 310
           ||||||| |||||||||||||||||||
Sbjct: 30  acttatattttgggacggagggagtat 4




>RF00906;MIR1122;AC226266.1/92361-92224 63629:Oryza minuta
          Length = 138

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 280 aggtacttataatttgggacggagggagtat 310
           |||| |||||| |||||||||||||||||||
Sbjct: 105 aggttcttatattttgggacggagggagtat 135




>RF00906;MIR1122;AC215820.3/114332-114188 4537:Oryza punctata
          Length = 145

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 285 cttataatttgggacggagggagtatg 311
           |||||| ||||||||||||||||||||
Sbjct: 29  cttatattttgggacggagggagtatg 3




>RF00906;MIR1122;AP005421.3/127890-127779 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 285 cttataatttgggacggagggagtatg 311
           |||||| ||||||||||||||||||||
Sbjct: 29  cttatattttgggacggagggagtatg 3




>RF00906;MIR1122;AACV01003040.1/15315-15426 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 283 tacttataatttgggacggagggagta 309
           |||||||| ||||||||||||||||||
Sbjct: 82  tacttatattttgggacggagggagta 108




>RF00906;MIR1122;AP008208.1/1673372-1673471 39947:Oryza sativa
           Japonica Group
          Length = 100

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 283 tacttataatttgggacggagggagta 309
           |||||||| ||||||||||||||||||
Sbjct: 70  tacttatattttgggacggagggagta 96




>RF00906;MIR1122;AAAA02018654.1/14883-14772 39946:Oryza sativa
           Indica Group
          Length = 112

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 283 tacttataatttgggacggagggagta 309
           |||||||| ||||||||||||||||||
Sbjct: 31  tacttatattttgggacggagggagta 5