miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 73.8 bits (37), Expect = 2e-13
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttgggtcatct 69
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactttgtactaactttagtacaaagttgggtcatct 25
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 33 aactttgtactaactttagtacaaagttgggtcatct 69
||||||||||||| |||||||||||||| |||||||
Sbjct: 34 aactttgtactaaagttagtacaaagttgagtcatct 70
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tagatgactcaacttggtactaacttt 27
||||||||||||||| |||||||||||
Sbjct: 71 tagatgactcaactttgtactaacttt 45
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 73.8 bits (37), Expect = 2e-13
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttgggtcatct 69
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactttgtactaactttagtacaaagttgggtcatct 25
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 33 aactttgtactaactttagtacaaagttgggtcatct 69
||||||||||||| |||||||||||||| |||||||
Sbjct: 34 aactttgtactaaagttagtacaaagttgagtcatct 70
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tagatgactcaacttggtactaacttt 27
||||||||||||||| |||||||||||
Sbjct: 71 tagatgactcaactttgtactaacttt 45
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 32 taactttgtactaactttagtacaaagttg 61
||||||||||||||||||||||||||||||
Sbjct: 73 taactttgtactaactttagtacaaagttg 44
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 58.0 bits (29), Expect = 1e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttgggtcatct 69
|||||||||||| |||||||||||||||| |||||||
Sbjct: 61 aactttgtactatctttagtacaaagttgagtcatct 25
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 58.0 bits (29), Expect = 1e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 33 aactttgtactaactttagtacaaagttgggtcatct 69
|||||||||||||||||||| |||||||||||||||
Sbjct: 34 aactttgtactaactttagtgtaaagttgggtcatct 70
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tagatgactcaacttggtactaacttt 27
||||||||||||||| |||||||||||
Sbjct: 24 tagatgactcaactttgtactaacttt 50
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttg 61
|||||||||||||||||||||||||||||
Sbjct: 79 aactttgtactaactttagtacaaagttg 51
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 33 aactttgtactaactttagtacaaagttg 61
||||||||||||| ||||||||||||||
Sbjct: 52 aactttgtactaaagttagtacaaagttg 80
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 56.0 bits (28), Expect = 6e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 22 aactttgtactaactttgtactaactttagtacaaagttgggtcatct 69
||||||||||||| ||||||||| |||||||||||||| |||||||
Sbjct: 34 aactttgtactaattttgtactatagttagtacaaagttgagtcatct 81
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tagatgactcaacttggtactaactttgtacta 33
||||||||||||||| ||||||| |||||||||
Sbjct: 24 tagatgactcaactttgtactaattttgtacta 56
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaa 57
||||||||||||||| |||||||||
Sbjct: 72 aactttgtactaactatagtacaaa 48
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 tagatgactcaacttggtactaact 25
||||||||||||||| |||||||||
Sbjct: 82 tagatgactcaactttgtactaact 58
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 36 tttgtactaactttagtacaaagttg 61
||||||||||||||||||||||||||
Sbjct: 117 tttgtactaactttagtacaaagttg 92
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttg 61
||||||||||||| |||||| ||||||||
Sbjct: 72 aactttgtactaaatttagtgcaaagttg 44
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 33 aactttgtactaactttagtacaaagttg 61
||||||| ||||| |||||||||||||||
Sbjct: 45 aactttgcactaaatttagtacaaagttg 73
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 33 aactttgtactaactttagtacaaagttgggtca 66
|||||||||||||||||||||| |||||| ||||
Sbjct: 45 aactttgtactaactttagtacgaagttgagtca 78
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 33 aactttgtactaactttagtacaaagttgggtca 66
||||||| ||||||||||||||||||||| ||||
Sbjct: 44 aactttgcactaactttagtacaaagttgagtca 77
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttgggtca 66
|||||| |||||||||||||||||||||| ||||
Sbjct: 61 aactttatactaactttagtacaaagttgagtca 28
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttg 61
||||||||| |||||||||||||||||||
Sbjct: 72 aactttgtattaactttagtacaaagttg 44
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 tgactcaacttggtactaactttgtacta 33
||||||||||| |||||||||||||||||
Sbjct: 28 tgactcaactttgtactaactttgtacta 56
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 aactttgtactaactttgtacta 44
|||||||||||||||||||||||
Sbjct: 34 aactttgtactaactttgtacta 56
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 tgactcaacttggtactaactttgtactaa 34
||||||||||| ||||||| ||||||||||
Sbjct: 80 tgactcaactttgtactaattttgtactaa 51
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 33 aactttgtactaactttagtacaaagttg 61
|||||||||||| ||||| ||||||||||
Sbjct: 34 aactttgtactagctttaatacaaagttg 62
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 49 tagtacaaagttgggtcatct 69
|||||||||||||||||||||
Sbjct: 24 tagtacaaagttgggtcatct 44
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttg 61
|||||||||||| || |||||||||||||
Sbjct: 72 aactttgtactagctctagtacaaagttg 44
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttg 61
|||||||||||| || |||||||||||||
Sbjct: 71 aactttgtactagctctagtacaaagttg 43
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 33 aactttgtactaactttagtacaaagttg 61
||||||||| |||||||||||||| ||||
Sbjct: 72 aactttgtattaactttagtacaaggttg 44
>RF00906;MIR1122;EU730902.1/34362-34465 15368:Brachypodium
distachyon
Length = 104
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 25 tttgtactaactttgtactaa 45
|||||||||||||||||||||
Sbjct: 47 tttgtactaactttgtactaa 67
