miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 65.9 bits (33), Expect = 7e-11
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 9 ataagtgtctcaaactcta-tactactttatagtaaaggtagtacaaagttgagacattt 67
||||||||||||| ||||| ||| ||||| || ||||| |||||||||||||||||| ||
Sbjct: 83 ataagtgtctcaa-ctctagtacaactttgtattaaagctagtacaaagttgagacactt 25
Query: 68 attttggga 76
|||||||||
Sbjct: 24 attttggga 16
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 9 ataagtgtctcaaactctatactactttatagtaaaggtagtacaaagttgagacattta 68
||||||||||||| || ||| ||||| || ||||| || |||||||||||||||||||
Sbjct: 23 ataagtgtctcaagcttagtacaactttgtactaaagttaatacaaagttgagacattta 82
Query: 69 ttttggga 76
||||||||
Sbjct: 83 ttttggga 90
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 34 tttatagtaaaggtagtacaaagttgagacatttattttgg 74
|||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 58 tttatagtaaagctagtacaaagttaagacagttattttgg 18
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 32 actttatagtaaaggtagtacaaagttgagacatttattttggga 76
||||| || ||||| |||||||||||||||||| |||||||||||
Sbjct: 53 actttgtactaaagttagtacaaagttgagacacttattttggga 97
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 41 taaaggtagtacaaagttgagacatttattttggga 76
||||| || |||||||||||||||||||||||||||
Sbjct: 55 taaagttaatacaaagttgagacatttattttggga 90
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttg 73
|||||||||||||||||||||||||||
Sbjct: 61 tagtacaaagttgagacatttattttg 87
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 32 actttatagtaaaggtagtacaaagttgagacatttattttgg 74
||||| ||||| || |||||||||||||||||| |||||||||
Sbjct: 46 actttgtagtagagctagtacaaagttgagacacttattttgg 88
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttggga 76
|||||||||||||||||| |||||||||||
Sbjct: 61 tagtacaaagttgagacacttattttggga 90
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttggga 76
|||||||||||||||||| |||||||||||
Sbjct: 61 tagtacaaagttgagacacttattttggga 90
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttggga 76
|||||||||||||||||| |||||||||||
Sbjct: 61 tagtacaaagttgagacagttattttggga 90
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttggga 76
|||||||||||||||||| |||||||||||
Sbjct: 60 tagtacaaagttgagacagttattttggga 89
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 49 gtacaaagttgagacatttattttg 73
|||||||||||||||| ||||||||
Sbjct: 43 gtacaaagttgagacagttattttg 19
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttggga 76
|||||||||||||||||| |||||||||||
Sbjct: 61 tagtacaaagttgagacacttattttggga 90
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 32 actttatagtaaaggtagtacaaagttgagacatttattttggga 76
||||| || ||||| ||||||||| |||||||| |||||||||||
Sbjct: 94 actttgtactaaagttagtacaaacttgagacagttattttggga 138
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 32 actttatagtaaaggtagtacaaagttgagacatttattttggga 76
||||| || ||||| |||||||||||| ||||| |||||||||||
Sbjct: 46 actttgtactaaagttagtacaaagttaagacacttattttggga 90
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 9 ataagtgtctcaaactctatactactttatagtaaaggtagtacaaagttgagacattta 68
|||| ||||||||||| |||| | ||| || || || ||||| |||||||||||| |||
Sbjct: 83 ataactgtctcaaacttaatacaagtttgtactatagctagtataaagttgagacactta 24
Query: 69 ttttggga 76
||||||||
Sbjct: 23 ttttggga 16
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 41 taaaggtagtacaaagttgagacatttattttggga 76
||||| ||||||||||||||| || |||||||||||
Sbjct: 82 taaagttagtacaaagttgagtcacttattttggga 117
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 42 aaaggtagtacaaagttgagacatttattttggga 76
|||| ||||||||||||||| || |||||||||||
Sbjct: 50 aaagttagtacaaagttgagtcacttattttggga 16
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 32 actttatagtaaaggtagtacaaagttgagacatttattttgg 74
||||| || ||||| ||||||||||||||| ||| ||||||||
Sbjct: 35 actttgtactaaagttagtacaaagttgagtcatctattttgg 77
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 32 actttatagtaaaggtagtacaaagttgagacatttattttgg 74
|||||| | ||||| ||||||||||||||| ||| ||||||||
Sbjct: 60 actttacactaaagttagtacaaagttgagtcatctattttgg 18
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tacaaagttgagacatttattttggga 76
||||||||||||||| |||||||||||
Sbjct: 64 tacaaagttgagacagttattttggga 90
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttggga 76
||||||||||||||| || |||||||||||
Sbjct: 57 tagtacaaagttgagtcacttattttggga 86
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 32 actttatagtaaaggtagtacaaagttgagacatttattttg 73
||||| || ||||| ||||||||||||||| ||| |||||||
Sbjct: 35 actttgtactaaagttagtacaaagttgagtcatctattttg 76
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttggga 76
||||||||||||||| || |||||||||||
Sbjct: 60 tagtacaaagttgagtcacttattttggga 89
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttggga 76
||||| |||||||||||| |||||||||||
Sbjct: 61 tagtataaagttgagacagttattttggga 90
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 47 tagtacaaagttgagacatttattttggga 76
||||||||||||||| || |||||||||||
Sbjct: 45 tagtacaaagttgagtcacttattttggga 16
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 47 tagtacaaagttgagacatttattttggga 76
||||| |||||||||||| |||||||||||
Sbjct: 61 tagtataaagttgagacagttattttggga 90
