miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 16 ataagtgtctcaactctaatactactttatagtaaagttagtacaaagttgagacattta 75
|||||||||||||||||| ||| ||||| || ||||| |||||||||||||||||| |||
Sbjct: 83 ataagtgtctcaactctagtacaactttgtattaaagctagtacaaagttgagacactta 24
Query: 76 ttttgggatggagg 89
|||||||| |||||
Sbjct: 23 ttttgggacggagg 10
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 87.7 bits (44), Expect = 2e-17
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 2 ccctccgtcttaatataagtgtctcaactctaatactactttatagtaaagttagtacaa 61
|||||||||| || ||||||||||||| ||| ||| ||||| || ||||||||||||||
Sbjct: 9 ccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttagtacaa 68
Query: 62 agttgagacatttattttgggatggagg 89
|||| ||||| ||||||||||| |||||
Sbjct: 69 agttaagacacttattttgggacggagg 96
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 79.8 bits (40), Expect = 5e-15
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 2 ccctccgtcttaatataagtgtctcaactctaatactactttatagtaaagttagtacaa 61
||||||||| || ||||||||||||| || ||| ||||| || |||||||| |||||
Sbjct: 9 ccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaatacaa 68
Query: 62 agttgagacatttattttgggatggagg 89
|||||||||||||||||||||| |||||
Sbjct: 69 agttgagacatttattttgggacggagg 96
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 77.8 bits (39), Expect = 2e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 39 actttatagtaaagttagtacaaagttgagacatttattttgggatggagg 89
||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 53 actttgtactaaagttagtacaaagttgagacacttattttgggatggagg 103
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 71.9 bits (36), Expect = 1e-12
Identities = 76/88 (86%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 2 ccctccgtcttaatataagtgtctcaactctaatactactttatagtaaagttagtacaa 61
|||||||||| || |||| |||||||||| | ||| ||||| || || || ||||||||
Sbjct: 9 ccctccgtctcaaaataactgtctcaactttg-tacaactttgtactagagctagtacaa 67
Query: 62 agttgagacatttattttgggatggagg 89
|||||||||| |||||||||||||||||
Sbjct: 68 agttgagacagttattttgggatggagg 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 56 gtacaaagttgagacatttattttgggatggagg 89
|||||||||||||||| |||||||| || |||||
Sbjct: 43 gtacaaagttgagacagttattttgagacggagg 10
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 71.9 bits (36), Expect = 1e-12
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 2 ccctccgtcttaatataagtgtctcaactctaatactactttatagtaaagttagtacaa 61
||||||||| || ||||||||||||| || ||| || || || |||||||| |||||
Sbjct: 9 ccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaatacaa 68
Query: 62 agttgagacatttattttgggatggagg 89
|||||||||||||||||||||| |||||
Sbjct: 69 agttgagacatttattttgggacggagg 96
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 65.9 bits (33), Expect = 8e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 48 taaagttagtacaaagttgagacatttattttgggatggag 88
||||||||||||||||||||| || ||||||||||||||||
Sbjct: 82 taaagttagtacaaagttgagtcacttattttgggatggag 122
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 49 aaagttagtacaaagttgagacatttattttgggatggagg 89
|||||||||||||||||||| || ||||||||||| |||||
Sbjct: 50 aaagttagtacaaagttgagtcacttattttgggacggagg 10
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 63.9 bits (32), Expect = 3e-10
Identities = 75/88 (85%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 2 ccctccgtcttaatataagtgtctcaactctaatactactttatagtaaagttagtacaa 61
||||||||| || |||||||||||||| || ||| | |||||| || |||||||||||
Sbjct: 9 ccctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagttagtacaa 68
Query: 62 agttgagacatttattttgggatggagg 89
|| ||||||| ||||||||||| |||||
Sbjct: 69 ag-tgagacacttattttgggacggagg 95
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 54 tagtacaaagttgagacatttattttgggatggagg 89
|||||||||||||||||| |||||||||||||||||
Sbjct: 61 tagtacaaagttgagacacttattttgggatggagg 96
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 61.9 bits (31), Expect = 1e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 39 actttatagtaaagttagtacaaagttgagacatttattttgggatggagg 89
||||| || ||||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 94 actttgtactaaagttagtacaaacttgagacagttattttgggacggagg 144
Score = 46.1 bits (23), Expect = 8e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 16 ataagtgtctcaactctaatactactttatagtaaagttagtacaaagttgagac 70
|||||||||||||| || ||| ||||| | |||| ||||||||||||||||||
Sbjct: 23 ataagtgtctcaaccttagtacaactttgcactaaatttagtacaaagttgagac 77
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 61.9 bits (31), Expect = 1e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 39 actttatagtaaagttagtacaaagttgagacatttattttgggatggagg 89
||||| || ||||||||||||||||||||| ||| |||||||| |||||||
Sbjct: 35 actttgtactaaagttagtacaaagttgagtcatctattttggaatggagg 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 53 ttagtacaaagttgagacatttattttgggatggagga 90
|||||||||||||| | ||| |||||||| ||||||||
Sbjct: 46 ttagtacaaagttgggtcatctattttggaatggagga 9
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 41 tttatagtaaagttagtacaaagttgagacatttattttgg 81
|||||||||||| |||||||||||| ||||| |||||||||
Sbjct: 58 tttatagtaaagctagtacaaagttaagacagttattttgg 18
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 54 tagtacaaagttgagacatttattttgggatggagg 89
|||||||||||||||||| ||||||||||| |||||
Sbjct: 61 tagtacaaagttgagacagttattttgggacggagg 96
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 56.0 bits (28), Expect = 8e-08
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 2 ccctccgtcttaatataagtgtctcaactctaatactactttatagtaaagttagtacaa 61
|||||| ||| || |||| |||||||| || ||| ||||| ||||| || ||||||||
Sbjct: 9 ccctccatctcaaaataactgtctcaagcttagtacaactttgtagtagagctagtacaa 68
Query: 62 agttgagacatttattttgg 81
|||||||||| |||||||||
Sbjct: 69 agttgagacacttattttgg 88
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 54 tagtacaaagttgagacatttattttgggatggagg 89
|||||||||||||||||| ||||||||||| |||||
Sbjct: 61 tagtacaaagttgagacacttattttgggacggagg 96
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 39 actttatagtaaagttagtacaaagttgagacatttattttgg 81
|||||||| ||||||||||| ||||||||| ||| ||||||||
Sbjct: 60 actttatattaaagttagtataaagttgagtcatctattttgg 18
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 39 actttatagtaaagttagtacaaagttgagacatttattttgg 81
|||||| | ||||||||||||||||||||| ||| ||||||||
Sbjct: 60 actttacactaaagttagtacaaagttgagtcatctattttgg 18
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tagtacaaagttgagacatttattttg 80
|||||||||||||||||||||||||||
Sbjct: 61 tagtacaaagttgagacatttattttg 87
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 aagttagtacaaagttgagacatttattttggga 83
||||||||||||||||||| || |||||||||||
Sbjct: 53 aagttagtacaaagttgagtcacttattttggga 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 48 taaagttagtacaaagttgagacatttattttgggatggag 88
||||||||||||||||||||| || ||| ||||||| ||||
Sbjct: 51 taaagttagtacaaagttgagtcacttactttgggacggag 11
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 2 ccctccgtcttaatataagtgtctcaactctaatactactttatagtaaagttagtacaa 61
||||||||| || |||||||||||||| || ||| ||||| || || ||||||| ||
Sbjct: 97 ccctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagagttagtgtaa 38
Query: 62 agttgagacatttattttggga 83
| |||||||| |||||||||||
Sbjct: 37 aattgagacacttattttggga 16
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 39 actttatagtaaagttagtacaaagttgagacatttattttg 80
||||| || ||||||||||||||||||||| ||| |||||||
Sbjct: 35 actttgtactaaagttagtacaaagttgagtcatctattttg 76
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 57 tacaaagttgagacatttattttgggatggagga 90
||||||||||||||| ||||||||||| ||||||
Sbjct: 64 tacaaagttgagacagttattttgggacggagga 97
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 tagtacaaagttgagacatttattttggga 83
|||||||||||||||||| |||||||||||
Sbjct: 61 tagtacaaagttgagacacttattttggga 90
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 53 ttagtacaaagttgagacatttattttgggatggagg 89
|||||||||||||||| || ||||||||||| |||||
Sbjct: 59 ttagtacaaagttgagtcacttattttgggacggagg 95
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 39 actttatagtaaagttagtacaaagttgagacatttattttggga 83
|||||||| ||| |||||||||||||||| || |||||||||||
Sbjct: 60 actttatactaactttagtacaaagttgagtcacttattttggga 16
Score = 46.1 bits (23), Expect = 8e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 39 actttatagtaaagttagtacaaagttgagacatttattttgggatggagg 89
||||| || ||||||||||| ||||||||| || ||| ||||||| |||||
Sbjct: 35 actttgtactaaagttagtataaagttgagtcacttaatttgggacggagg 85
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 54 tagtacaaagttgagacatttattttgggatggagg 89
||||| |||||||||||| ||||||||||| |||||
Sbjct: 61 tagtataaagttgagacagttattttgggacggagg 96
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 54 tagtacaaagttgagacatttattttgggatggagg 89
||||| |||||||||||| ||||||||||| |||||
Sbjct: 61 tagtataaagttgagacagttattttgggacggagg 96
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 56 gtacaaagttgagacatttattttgggatggagga 90
|||| ||||||||||| ||||||||||| ||||||
Sbjct: 51 gtactaagttgagacacttattttgggacggagga 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 60 aaagttgagacatttattttgggatggagg 89
|||||||||||| ||||||||||| |||||
Sbjct: 39 aaagttgagacacttattttgggacggagg 10
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 39 actttatagtaaagttagtacaaagttgagacatttattttgggatggagg 89
|||||||| ||||| || |||||| || | ||| |||||||||||||||||
Sbjct: 46 actttatactaaagctaatacaaaattaacacacttattttgggatggagg 96
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 54 tagtacaaagttgagacatttattttggga 83
||||| |||||||||||| |||||||||||
Sbjct: 45 tagtataaagttgagacacttattttggga 16
