miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 123 bits (62), Expect = 5e-28
Identities = 93/102 (91%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 6 catgtactccctccggttccaaaatagatgacccaatttcgtactaacttggtactaaag 65
||||||||||||||| |||||||||||||||||||| || ||||||||| || |||||
Sbjct: 105 catgtactccctccg-ttccaaaatagatgacccaactttttactaactttatattaaag 47
Query: 66 ttagtataaagttgagtcatctatttgggaacagagggagta 107
|||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 46 ttagtataaagttgagtcatctattttggaacggagggagta 5
Score = 77.8 bits (39), Expect = 3e-14
Identities = 85/99 (85%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 9 gtactccctccggttccaaaatagatgacccaatttcgtactaacttggtactaaagtta 68
|||||||||||| |||||||||||||||| ||| || ||||||||| ||||||||
Sbjct: 4 gtactccctccg-ttccaaaatagatgactcaactttatactaactttaatataaagtta 62
Query: 69 gtataaagttgagtcatctatttgggaacagagggagta 107
||| ||||||| ||||||||||| ||||| |||||||||
Sbjct: 63 gtaaaaagttgggtcatctattttggaacggagggagta 101
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 88/99 (88%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 9 gtactccctccggttccaaaatagatgacccaatttcgtactaacttggtactaaagtta 68
|||||||||||| |||||||||||||||| ||| || ||||||| || |||||| |||||
Sbjct: 4 gtactccctccg-ttccaaaatagatgactcaactttgtactaattttgtactatagtta 62
Query: 69 gtataaagttgagtcatctatttgggaacagagggagta 107
||| ||||||||||||||||||| |||| |||||||||
Sbjct: 63 gtacaaagttgagtcatctattttagaacggagggagta 101
Score = 77.8 bits (39), Expect = 3e-14
Identities = 87/99 (87%), Gaps = 3/99 (3%)
Strand = Plus / Minus
Query: 10 tactccctccggttccaaaatagatgacccaatttcgtactaact-tggtactaaagtta 68
||||||||||| ||| |||||||||||| ||| || ||||||||| | |||| ||| |||
Sbjct: 101 tactccctccg-ttctaaaatagatgactcaactttgtactaactatagtacaaaa-tta 44
Query: 69 gtataaagttgagtcatctatttgggaacagagggagta 107
||| ||||||||||||||||||| ||||| |||||||||
Sbjct: 43 gtacaaagttgagtcatctattttggaacggagggagta 5
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 59 actaaagttagtataaagttgagtcatctatttgggaacagagggagtatg 109
||||||||||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct: 53 actaaagttagtacaaagttgagtcatctattttggaacggagggagtatg 3
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 51 aacttggtactaaagttagtataaagttgagtcatctatttgggaacagagggagta 107
||||| ||||||| ||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct: 34 aactttgtactaactttagtgtaaagttgggtcatctattttggaacggagggagta 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 10 tactccctccggttccaaaatagatgacccaatttcgtactaactt 55
||||||||||| |||||||||||||||| ||| || ||||||||||
Sbjct: 5 tactccctccg-ttccaaaatagatgactcaactttgtactaactt 49
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 51 aacttggtactaaagttagtataaagttgagtcatctatttgggaacagagggagtat 108
||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct: 34 aactttgtactaaagttagtacaaagttgagtcatctattttggaatggagggagtat 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 51 aacttggtactaaagttagtataaagttgagtcatctatttgggaa 96
||||| ||||||| |||||| ||||||| ||||||||||| ||||
Sbjct: 61 aactttgtactaactttagtacaaagttgggtcatctattttggaa 16
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 22 ttccaaaatagatgacccaatttcgtactaactt 55
|||||||||||||||| ||| || ||||||||||
Sbjct: 79 ttccaaaatagatgactcaactttgtactaactt 46
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 51 aacttggtactaaagttagtataaagttgagtcatctatttgggaacagagggagtat 108
||||| ||||||||||||||| ||||||||||||||||||| | ||| |||| |||||
Sbjct: 34 aactttgtactaaagttagtacaaagttgagtcatctattttgaaacggaggaagtat 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 51 aacttggtactaaagttagtataaagttgagtcatctatttgggaacagagggagta 107
||||| ||||||| |||||| ||||||| ||||||||||| ||||| || ||||||
Sbjct: 61 aactttgtactaactttagtacaaagttgggtcatctattttggaacggaaggagta 5
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 51 aacttggtactaaagttagtataaagttgagtca 84
||||| ||||||||||||||||||||||||||||
Sbjct: 34 aactttgtactaaagttagtataaagttgagtca 67
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 66 ttagtataaagttgagtcatctatttgggaacagagggagtat 108
|||||| |||||||||||| ||||| || |||||||||||||
Sbjct: 46 ttagtacaaagttgagtcacttattttgggacagagggagtat 4
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 51 aacttggtactaaagttagtataaagttgagtcatctatttgggaacagagggagta 107
||||| ||||||||| ||||| ||||||||||| ||||||| |||| |||||||||
Sbjct: 34 aactttgtactaaagatagtacaaagttgagtcgtctattttagaacggagggagta 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 66 ttagtataaagttgagtcatctattt 91
|||||| |||||||||||||||||||
Sbjct: 46 ttagtacaaagttgagtcatctattt 21
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 73 aaagttgagtcatctatttgggaacagagggagta 107
||||||||||||||||||| ||||| |||||||||
Sbjct: 39 aaagttgagtcatctattttggaacggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 73 aaagttgagtcatctatttgggaacagagggagt 106
||||||||||||||||||| ||||| ||||||||
Sbjct: 42 aaagttgagtcatctattttggaacggagggagt 75
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 67 tagtataaagttgagtcatctatttgggaacagagggagtat 108
||||| ||||||| ||||||||||| ||||| ||||||||||
Sbjct: 24 tagtacaaagttgggtcatctattttggaacggagggagtat 65
Score = 52.0 bits (26), Expect = 2e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 10 tactccctccggttccaaaatagatgacccaatttcgtacta 51
||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 64 tactccctccg-ttccaaaatagatgacccaactttgtacta 24
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 51 aacttggtactaaagttagtataaagttgagtcatctatttgggaacagagggagta 107
||||| |||||||||||| || ||||||||| ||| ||||| || || |||||||||
Sbjct: 45 aactttgtactaaagttaatacaaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 51 aacttggtactaaagttagtataaagttgagt 82
||||| ||||||||||||||| ||||||||||
Sbjct: 72 aacttcgtactaaagttagtacaaagttgagt 41
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 62 aaagttagtataaagttgagtcatctatttgggaacagagggagtatg 109
|||||||||| |||||||||||| ||||| || || |||||||||||
Sbjct: 50 aaagttagtacaaagttgagtcacttattttgggacggagggagtatg 3
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 57 gtactaaagttagtataaagttgagtcatctatttgggaacagagggagta 107
|||||||||||| || ||||||||| ||| ||||| || || |||||||||
Sbjct: 51 gtactaaagttaatacaaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 51 aacttggtactaaagttagtataaagttgag 81
||||| ||||||||||||||| |||||||||
Sbjct: 52 aactttgtactaaagttagtacaaagttgag 82
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 61 taaagttagtataaagttgagtcatctatttgggaacagagggagta 107
|||||||| || ||||||| ||||||||||| ||||| || ||||||
Sbjct: 51 taaagttaatacaaagttgggtcatctattttggaacggaaggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 21 gttccaaaatagatgacccaatttcgtactaactt 55
||||||||||||||||||||| || ||| ||||||
Sbjct: 15 gttccaaaatagatgacccaactttgtattaactt 49
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 51 aacttggtactaaagttagtataaagttgagtcatctatttgggaacagagggagtat 108
||||| ||||||||||||||| ||| ||||| || ||||| || || ||||||||||
Sbjct: 93 aactttgtactaaagttagtacaaacttgagacagttattttgggacggagggagtat 150
