miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 143 bits (72), Expect = 7e-34
Identities = 99/108 (91%)
Strand = Plus / Minus
Query: 19 gtactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagt 78
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 112 gtactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagt 53
Query: 79 tctatatacattcatttctgcgacaattaatttggaacggaaggagta 126
|||| |||||| |||||| ||||| | |||||||| ||| ||||||||
Sbjct: 52 tctagatacatccatttcagcgacgagtaatttgggacgaaaggagta 5
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 113 bits (57), Expect = 7e-25
Identities = 84/93 (90%)
Strand = Plus / Plus
Query: 19 gtactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagt 78
|||||||||||||||||||||| | ||||||| || ||||||||||| |||||||||||
Sbjct: 4 gtactccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagt 63
Query: 79 tctatatacattcatttctgcgacaattaattt 111
|||| ||||||||||||||||||| | ||||||
Sbjct: 64 tctagatacattcatttctgcgacgagtaattt 96
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 111 bits (56), Expect = 3e-24
Identities = 96/108 (88%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 19 gtactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagt 78
|||| ||||||||| ||| ||||||||| || |||||||||||||||||||||||||||
Sbjct: 4 gtaccccctccgttccga-ttacttgtctcacatatggatgtatctagatgtattttagt 62
Query: 79 tctatatacattcatttctgcgacaattaatttggaacggaaggagta 126
|||| |||||| |||||| ||||| | |||||||||||||| ||||||
Sbjct: 63 tctagatacatccatttcagcgacgagtaatttggaacggagggagta 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctaga 67
||||||||||||| | ||||||| ||||| | |||||||||||||||
Sbjct: 110 tactccctccgttccaaattactcgtcgctgaaatggatgtatctaga 63
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 107 bits (54), Expect = 4e-23
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 17 aggtactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtatttta 76
||||| |||||||||| ||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 2 aggtattccctccgttccgaattactcgtccaataaatggatgtatctagatgtatttta 61
Query: 77 gttctatatacattcatttctgcgacaattaatttggaacggaaggagta 126
||| || |||||| |||||||||||| | |||||||||||||| ||||||
Sbjct: 62 gttatagatacatccatttctgcgacgagtaatttggaacggagggagta 111
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 17 aggtactccctccgtttcgaattacttgtcgcaggtatggatgtatcta 65
|||||||||||||||| | ||||||| ||||||| |||||||||||||
Sbjct: 114 aggtactccctccgttccaaattactcgtcgcagaaatggatgtatcta 66
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 105 bits (53), Expect = 2e-22
Identities = 92/105 (87%)
Strand = Plus / Plus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagtt 64
Query: 80 ctatatacattcatttctgcgacaattaatttggaacggaaggag 124
|| ||| || |||||||| ||| | |||||||||||||| ||||
Sbjct: 65 ttagatatatccatttctgagacgagtaatttggaacggagggag 109
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 99.6 bits (50), Expect = 1e-20
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
||||| ||||||||||||||| ||||| ||||||| |||||||||||| ||||||| ||
Sbjct: 111 tactctctccgtttcgaattatttgtcataggtatgaatgtatctagatttattttaatt 52
Query: 80 ctatatacattcatttctgcgacaattaatttggaacg 117
||| |||||||||||||||| || | |||||| |||||
Sbjct: 51 ctagatacattcatttctgcaacgagtaatttagaacg 14
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 95.6 bits (48), Expect = 2e-19
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 24 ccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagttctat 83
||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 107 ccctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctag 48
Query: 84 atacattcattt 95
|||||| |||||
Sbjct: 47 atacatccattt 36
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 93.7 bits (47), Expect = 6e-19
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagtt 52
Query: 80 ctatatacattcatttctgcgacaattaatttggaacggaaggagta 126
||| |||||| ||||| || ||||| ||||| |||||||| ||||||
Sbjct: 51 ctagatacatccatttttgagacaagtaattcggaacggagggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 17 aggtactccctccgtttcgaattacttgtcgcaggtatggatgtatctaga 67
|||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct: 2 aggtactccctccgttccgaattacttgtctcaaaaatggatgtatctaga 52
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 93.7 bits (47), Expect = 6e-19
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
|||||||| |||| ||||||||||||| ||| |||| || ||| || |||||||||||||
Sbjct: 5 tactcccttcgttccgaattacttgtcacagatatgaatatatataaatgtattttagtt 64
Query: 80 ctatatacattcatttctgcgacaattaatttgga 114
||| ||| ||||||||||||||| | |||||||||
Sbjct: 65 ctagatatattcatttctgcgacgagtaatttgga 99
Score = 83.8 bits (42), Expect = 6e-16
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 19 gtactccctccgtttcgaattacttgtcgcaggtatggatgtatct 64
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 144 gtactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 93.7 bits (47), Expect = 6e-19
Identities = 80/91 (87%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
|||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 111 tactccatccgtttggaattacttgtcgcagaaatgaatgtatctagatgtattttagtt 52
Query: 80 ctatatacattcatttctgcgacaattaatt 110
||| |||||| ||| || | ||||| |||||
Sbjct: 51 ctagatacatccatatccgagacaagtaatt 21
Score = 69.9 bits (35), Expect = 9e-12
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 16 taggtactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtatttt 75
|||||||||||||| || |||||||||||| | | |||||||||||||||| || |
Sbjct: 1 taggtactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaat 60
Query: 76 agttctatatacattcatttctgcgacaattaatt 110
| |||| ||||||||||||||||||||| |||||
Sbjct: 61 acatctagatacattcatttctgcgacaagtaatt 95
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 89.7 bits (45), Expect = 1e-17
Identities = 90/105 (85%)
Strand = Plus / Plus
Query: 23 tccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagttcta 82
|||||||||| ||||||||||||| || ||||||||||||||| | ||| |||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttcta 67
Query: 83 tatacattcatttctgcgacaattaatttggaacggaaggagtat 127
|||||| ||||| |||||||| ||||| |||||||||| |||||
Sbjct: 68 gatacatccatttatgcgacaagtaattcggaacggaagaagtat 112
Score = 50.1 bits (25), Expect = 8e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 27 tccgtttcgaattacttgtcgcaggtatggatgtatctaga 67
|||||| |||||||||||||||| |||||||||||||||
Sbjct: 104 tccgttccgaattacttgtcgcataaatggatgtatctaga 64
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 87.7 bits (44), Expect = 4e-17
Identities = 92/108 (85%)
Strand = Plus / Minus
Query: 19 gtactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagt 78
|||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct: 112 gtactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagt 53
Query: 79 tctatatacattcatttctgcgacaattaatttggaacggaaggagta 126
|||| ||| || ||||| | ||||| ||||| ||||||| ||||||
Sbjct: 52 tctagatagatccattttcgagacaagtaattccgaacggagggagta 5
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 87.7 bits (44), Expect = 4e-17
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 19 gtactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagt 78
|||||||||| || |||| |||||||||| | |||||||||||||||||||||| |||
Sbjct: 4 gtactccctctgtcccgaaatacttgtcgcggaaatggatgtatctagatgtatttcagt 63
Query: 79 tctatatacattcatttctgcgacaattaatt 110
|||| |||||| ||||||| |||||| |||||
Sbjct: 64 tctagatacatccatttctacgacaagtaatt 95
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 19 gtactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagt 78
||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||||
Sbjct: 4 gtactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagt 63
Query: 79 tctatatacattcattt 95
|||| |||||| |||||
Sbjct: 64 tctagatacatccattt 80
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
|||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 62
Query: 80 ctatatacattcattt 95
||| |||||| |||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 39 tacttgtcgcaggtatggatgtatctagatgtattttagttctatatacattcatttct 97
||||||||| | | ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 102 tacttgtcgaaagaatggatgtatctagatgcattttagttctaaatacattcatttct 44
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtattttagtt 52
Query: 80 ctatatacat 89
||| ||||||
Sbjct: 51 ctagatacat 42
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 73.8 bits (37), Expect = 6e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 35 gaattacttgtcgcaggtatggatgtatctagatgtattttagttctatatacattcatt 94
|||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||
Sbjct: 28 gaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacattcatt 87
Query: 95 t 95
|
Sbjct: 88 t 88
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 39 tacttgtcgcaggtatggatgtatctagatgtattttagttctatatacattcattt 95
|||||||| ||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 24 tacttgtcataggaatggatgtatctagatgtattttagttctagatacatccattt 80
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctatatacattcattt 95
|||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 38 atgggtgtatctagatgtattttagttctagatacattcattt 80
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 67.9 bits (34), Expect = 4e-11
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
|||||||||||| |||||| ||||| || ||||||||||||||| |||||||||||
Sbjct: 121 tactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttagtt 62
Query: 80 ctatatacattcatttct 97
||| |||||| |||||||
Sbjct: 61 ctagatacatccatttct 44
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctatatacattcatttct 97
||||||||||||||||||||||||||| || |||||| |||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatccatttct 82
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 56 gatgtatctagatgtattttagttctatatacattcattt 95
|||||||||||| |||||||||||||| ||||||||||||
Sbjct: 41 gatgtatctagacgtattttagttctaaatacattcattt 80
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 55 ggatgtatctagatgtattttagttctatatacatt 90
|||||||||||||||||||||||||||| |||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatacatt 51
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 63.9 bits (32), Expect = 6e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 36 aattacttgtcgcaggtatggatgtatctagatgtattttagttctatatacattcattt 95
||||| |||||| || ||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 21 aattatttgtcggagaaatggatgtatctagacgtattttagttctagatacatccattt 80
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctatatacattcattt 95
|||||||||||||||||||||||||| ||||||| ||||
Sbjct: 79 atgtatctagatgtattttagttctagatacatttattt 41
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 55 ggatgtatctagatgtattttagttctatatacat 89
|||||||||||||||||||||||||||| ||||||
Sbjct: 61 ggatgtatctagatgtattttagttctacatacat 95
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 55 ggatgtatctagatgtattttagttctatatacat 89
|||||||||||||||||||||||||||| ||||||
Sbjct: 86 ggatgtatctagatgtattttagttctaaatacat 52
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctatatacattcattt 95
|||||||||||||||||||||||||||||| ||| || |||||
Sbjct: 38 atggatgtatctagatgtattttagttctagatatatccattt 80
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctatatacattcattt 95
|||||||||||| ||||||||||||| ||||||||||||
Sbjct: 84 atgtatctagatatattttagttctagatacattcattt 46
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 55 ggatgtatctagatgtattttagttctatataca 88
|||||||||||||||||||||||||||| |||||
Sbjct: 86 ggatgtatctagatgtattttagttctagataca 53
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 60.0 bits (30), Expect = 9e-09
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctatatacattcatttctgcgacaattaatttggaac 116
||||||||||||||||||||||| || |||||| ||||| | ||||| ||||| ||||
Sbjct: 74 atgtatctagatgtattttagttatagatacatccatttttatgacaagtaattccgaac 15
Query: 117 ggaaggagta 126
||| ||||||
Sbjct: 14 ggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 17 aggtactccctccgtttcgaattacttgtc 46
|||||||||||||||| ||||||||||||
Sbjct: 2 aggtactccctccgttcggaattacttgtc 31
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 39 tacttgtcgcaggtatggatgtatctagatgtattttagttctatatacattcattt 95
|||||||| ||| ||||||||| ||||| |||||||||||||| |||||| |||||
Sbjct: 102 tacttgtcagaggaatggatgtacctagacgtattttagttctagatacatccattt 46
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
||||||||||||| |||||||| ||| || ||| |||||||||||||||||||| ||
Sbjct: 121 tactccctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaatt 62
Query: 80 ctatatacattcattt 95
|| |||||| |||||
Sbjct: 61 gtagatacatccattt 46
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 20 tactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 79
|||||||||||| ||| ||||||||| || ||| || ||||||||||||||||| ||
Sbjct: 121 tactccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtattttaatt 62
Query: 80 ctatatacattcattt 95
||| |||||| |||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 56 gatgtatctagatgtattttagttctatatacattc 91
||||||||||||||||||||| ||||| ||||||||
Sbjct: 85 gatgtatctagatgtattttaattctagatacattc 50
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 53 atggatgtatctagatgtattttagttctatatacattcattt 95
|||||| ||||||||||||||||||||||| | |||| |||||
Sbjct: 78 atggatatatctagatgtattttagttctagacacatccattt 36
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctatatacattcattt 95
||||||||||||||| |||||||| ||||| |||||| |||||
Sbjct: 38 atggatgtatctagacgtattttacttctagatacatccattt 80
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 19 gtactccctccgtttcgaattacttgtcgcaggtatggatgtatctagatgtattttagt 78
|||| ||||||||| |||||| ||||||| || ||| |||||||||||||||||||
Sbjct: 112 gtaccccctccgttcggaattaattgtcgcgaaaatagatatatctagatgtattttagt 53
Query: 79 tctatatacattcatttc 96
|||| |||| | ||||||
Sbjct: 52 tctaaatacgtccatttc 35
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 39 tacttgtcgcaggtatggatgtatcta-gatgtattttagttctatatacattcattt 95
|||||||| ||| ||||||||||| | ||||||||||||||||| |||||| |||||
Sbjct: 103 tacttgtccgaggaatggatgtatcaaagatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 50.1 bits (25), Expect = 8e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 35 gaattacttgtcgcaggtatggatgtatctagatgtatttt-agttctatatacattcat 93
|||||||||| |||| ||||||||||||||| | ||||| ||||||| |||||| |||
Sbjct: 98 gaattacttgccgcaaaaatggatgtatctagacgcatttttagttctagatacatccat 39
Query: 94 ttctgcgacaattaatt 110
|||| ||| || |||||
Sbjct: 38 ttctacgagaaataatt 22
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 39 tacttgtcgcaggtatggatgtatctagatgtattttagttctatatacattcattt 95
|||||||| ||| ||| ||||||||||||||||| || ||||| |||||| |||||
Sbjct: 102 tacttgtcataggaatgtatgtatctagatgtattataattctagatacatccattt 46
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ggatgtatctagatgtattttagttcta 82
|||||||| |||||||||||||||||||
Sbjct: 49 ggatgtatttagatgtattttagttcta 76
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 tactccctccgtttcgaattacttgtc 46
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtc 31
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctatatacattcattt 95
|||||| |||| |||||||||||||| |||||| |||||
Sbjct: 84 atgtatttagacgtattttagttctacatacatccattt 46
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 55 ggatgtatctagatgtattttagttctatatacat 89
||||||||||||| ||||||||||||| ||||||
Sbjct: 50 ggatgtatctagacatattttagttctagatacat 84
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctatatacattcattt 95
||||||| ||||| | ||||||||||||| ||||||||||||
Sbjct: 38 atggatgcatctaaacatattttagttctaaatacattcattt 80
>RF00906;MIR1122;ABXC01002946.1/15272-15115 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 106 taatttggaacggaaggagtat 127
||||||||||||||||||||||
Sbjct: 25 taatttggaacggaaggagtat 4
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttcta 82
|||||| |||||||||||||||||||
Sbjct: 84 atgtatatagatgtattttagttcta 59
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 98 gcgacaattaatttggaacggaaggagtat 127
|||||| ||| |||||||||||||||||||
Sbjct: 33 gcgacacttattttggaacggaaggagtat 4
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttcta 82
|||||||||||| |||||||||||||
Sbjct: 84 atgtatctagatatattttagttcta 59
