miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 142 bits (71), Expect = 1e-33
Identities = 96/105 (91%)
Strand = Plus / Plus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
|||||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct: 5 tactccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagtt 64
Query: 70 ctagatacatccatttctgtgacgagtaatttggaacggagggag 114
|||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 65 ttagatatatccatttctgagacgagtaatttggaacggagggag 109
Score = 70.3 bits (35), Expect = 5e-12
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
|||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 52 tctagatacatccatttctgcgacgagtaattcagaacggagggagt 6
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 136 bits (68), Expect = 8e-32
Identities = 87/94 (92%)
Strand = Plus / Minus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
|||||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 111 tactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 52
Query: 70 ctagatacatccatttctgtgacgagtaatttgg 103
||||||||||||||||| | ||||||||||||||
Sbjct: 51 ctagatacatccatttcagcgacgagtaatttgg 18
Score = 46.3 bits (23), Expect = 8e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
||||||||||||||| || ||| ||||||| ||||||||||||||
Sbjct: 64 tctagatacatccatacgtgcgacaagtaattcggaacggagggagt 110
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 134 bits (67), Expect = 3e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 27 attacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccatttc 86
|||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 21 attacttgtctcacatatggatgtatctagatgtattttagttctagatacatccatttc 80
Query: 87 tgtgacgagtaatttggaacggagggagt 115
| ||||||||||||||||||||||||||
Sbjct: 81 agcgacgagtaatttggaacggagggagt 109
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 126 bits (63), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtatttwagttctagatacatccatttctgtgacgagtaatttg 102
|||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatccatttctgcgacgagtaatttg 97
Query: 103 gaacggagggagt 115
|||||||||||||
Sbjct: 98 gaacggagggagt 110
Score = 58.3 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggaggga 113
||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 52 tctagatacatccatttattggacgagtaattcggaacggaggga 8
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 112 bits (56), Expect = 1e-24
Identities = 93/106 (87%)
Strand = Plus / Minus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
|||||||| |||||||||||||||||| | ||||||||||||||| ||||| ||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagtt 52
Query: 70 ctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
|||||||||||||||| || ||| ||||||| ||||||||||||||
Sbjct: 51 ctagatacatccatttttgagacaagtaattcggaacggagggagt 6
Score = 48.3 bits (24), Expect = 2e-05
Identities = 85/106 (80%)
Strand = Plus / Plus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
|||||||| |||| |||||||||||| || ||||||||||||||| || | |
Sbjct: 5 tactccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatgt 64
Query: 70 ctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
|||||||||||||||| | ||| ||||||| |||||||||||||
Sbjct: 65 ctagatacatccattttttcgacaagtaattcagaacggagggagt 110
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 104 bits (52), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 20 gttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacat 79
|||| ||||||||||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct: 101 gttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctagatacat 42
Query: 80 ccatttctgtgacgagtaatttggaa 105
|||||| ||||||||||||||||
Sbjct: 41 ccattttaacgacgagtaatttggaa 16
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 98.2 bits (49), Expect = 2e-20
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
||||||||| |||| |||||||||||| ||| |||| || ||| || |||||||| ||||
Sbjct: 5 tactcccttcgttccgaattacttgtcacagatatgaatatatataaatgtattttagtt 64
Query: 70 ctagatacatccatttctgtgacgagtaatttgga 104
||||||| || |||||||| |||||||||||||||
Sbjct: 65 ctagatatattcatttctgcgacgagtaatttgga 99
Score = 66.3 bits (33), Expect = 8e-11
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatct 54
|||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 143 tactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
Score = 48.3 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 72 agatacatccatttctgtgacgagtaatttggaacggagggagt 115
|||||||||||| ||| ||| ||||||| ||||||||||||||
Sbjct: 99 agatacatccatacctgcgacaagtaattcggaacggagggagt 142
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 98.2 bits (49), Expect = 2e-20
Identities = 80/91 (87%)
Strand = Plus / Minus
Query: 25 gaattacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccatt 84
|||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 96 gaattacttgtcgcagaaatgaatgtatctagatgtattttagttctagatacatccata 37
Query: 85 tctgtgacgagtaatttggaacggagggagt 115
|| | ||| ||||||| ||| |||||||||
Sbjct: 36 tccgagacaagtaattccgaatggagggagt 6
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 96.2 bits (48), Expect = 8e-20
Identities = 91/106 (85%)
Strand = Plus / Minus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
|||||||| |||| |||||||||||| ||| ||||||||||||||| |||||| ||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagtt 52
Query: 70 ctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
||||||| |||||||| | ||| ||||||| |||||||||||||
Sbjct: 51 ctagatagatccattttcgagacaagtaattccgaacggagggagt 6
Score = 62.3 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
|||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct: 64 tctagatacatccatttctgagacaagtaattccgaacggagggagt 110
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 94.2 bits (47), Expect = 3e-19
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
|||||||| ||| | ||| |||||||||| | |||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtcccgaaatacttgtcgcggaaatggatgtatctagatgtatttcagtt 64
Query: 70 ctagatacatccatttctgtgacgagtaatt 100
|||||||||||||||||| ||| |||||||
Sbjct: 65 ctagatacatccatttctacgacaagtaatt 95
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 88.2 bits (44), Expect = 2e-17
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
|||||||| ||||| ||||||| ||| || ||| |||||||||||||||||| ||||
Sbjct: 111 tactccctctgttcgaaattactcgtccaagaaatgaatgtatctagatgtattttagtt 52
Query: 70 ctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
||||||||||||||| | |||| ||||||| |||||||||||||
Sbjct: 51 atagatacatccatttttatgacaagtaattccgaacggagggagt 6
Score = 54.3 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
||||||||||| ||||||| |||||||||||| |||| ||||||||
Sbjct: 64 tctagatacattcatttcttggacgagtaatttcgaacagagggagt 110
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 86.2 bits (43), Expect = 8e-17
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 25 gaattacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccatt 84
|||||| | ||||||| || ||||||||||| ||||||| |||||||||||||| ||||
Sbjct: 20 gaattattcgtcgcagaaatagatgtatctagttgtattttagttctagatacattcatt 79
Query: 85 tctgtgacgagtaattt 101
|||| ||||||||||||
Sbjct: 80 tctgcgacgagtaattt 96
Score = 52.3 bits (26), Expect = 1e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 70 ctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
||||||||||| ||||||| ||||| ||||| | ||||||||||||
Sbjct: 51 ctagatacatctatttctgcgacgaataattcgaaacggagggagt 6
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 86.2 bits (43), Expect = 8e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 29 tacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccattt 85
||||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24 tacttgtcgggggaatggatgtatctagatgtattttagttctagatacatccattt 80
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 86.2 bits (43), Expect = 8e-17
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 29 tacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccattt 85
||||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 102 tacttgtcgggggaatggatgtatctagatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 86.2 bits (43), Expect = 8e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 29 tacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccattt 85
|||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24 tacttgtcataggaatggatgtatctagatgtattttagttctagatacatccattt 80
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 84.2 bits (42), Expect = 3e-16
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 20 gttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacat 79
|||| ||||||||||||| || ||||||||||||||| | ||| ||||||||||||||
Sbjct: 15 gttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttctagatacat 74
Query: 80 ccatttctgtgacgagtaatttggaacgga 109
|||||| || ||| ||||||| ||||||||
Sbjct: 75 ccatttatgcgacaagtaattcggaacgga 104
Score = 50.3 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggaggga 113
||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct: 52 tctagatacatccatttctacgacaagtaattccgaacggaggga 8
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 84.2 bits (42), Expect = 3e-16
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 6 catatactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttw 65
|||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||
Sbjct: 115 catatactccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtatttt 56
Query: 66 agttctagatacatccattt 85
||||||||||||||| ||||
Sbjct: 55 agttctagatacatctattt 36
Score = 46.3 bits (23), Expect = 8e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
||||||||||||||||| | ||| ||||||| |||||||||||||
Sbjct: 64 tctagatacatccattttcgcgacaagtaattccgaacggagggagt 110
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 82.2 bits (41), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 25 gaattacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccatt 84
|||||| ||||| ||||||| |||||||||||| ||||| | |||||||||||| ||||
Sbjct: 96 gaattatttgtcataggtatgaatgtatctagatttattttaattctagatacattcatt 37
Query: 85 tctgtgacgagtaatttggaacg 107
|||| ||||||||||| |||||
Sbjct: 36 tctgcaacgagtaatttagaacg 14
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 82.2 bits (41), Expect = 1e-15
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 9 atactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagt 68
|||||||||| || | ||| |||||||| | | |||||||||||||||||||||| |||
Sbjct: 4 atactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattttagt 63
Query: 69 tctagatacatccatttct 87
| |||||||||||||||||
Sbjct: 64 tatagatacatccatttct 82
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 80.2 bits (40), Expect = 5e-15
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 8 tatactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwag 67
|||||||||| ||| | ||| || ||||| ||| |||||||||||||||||||||| ||
Sbjct: 3 tatactccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattttag 62
Query: 68 ttctagatacatccattt 85
||||||||| ||||||||
Sbjct: 63 ttctagatatatccattt 80
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 78.2 bits (39), Expect = 2e-14
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtatttwagttctagatacatccatttct 87
||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 88 atggatgtatctagacgtattttagttctagatacatccatttct 44
Score = 46.3 bits (23), Expect = 8e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
||||||||||||||||||| |||| | ||||| | |||||||||||
Sbjct: 74 tctagatacatccatttctatgacaaataattccggacggagggagt 120
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 76.3 bits (38), Expect = 8e-14
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
|||||||| ||| | ||| |||||||| ||| ||||||||| ||||| |||||| ||||
Sbjct: 121 tactccctctgtccggaaatacttgtcagaggaatggatgtacctagacgtattttagtt 62
Query: 70 ctagatacatccattt 85
||||||||||||||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 76.3 bits (38), Expect = 8e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 26 aattacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccattt 85
||||| |||||| || ||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 21 aattatttgtcggagaaatggatgtatctagacgtattttagttctagatacatccattt 80
Score = 46.3 bits (23), Expect = 8e-05
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
||||||||||||||||||| ||| | |||||| | |||||||||||
Sbjct: 52 tctagatacatccatttctccgacaaataatttcggacggagggagt 6
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 70.3 bits (35), Expect = 5e-12
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 25 gaattacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccatt 84
|||||||||||||||| ||||||||||||||| | ||| |||||||||||||| ||||
Sbjct: 28 gaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacattcatt 87
Query: 85 t 85
|
Sbjct: 88 t 88
Score = 48.3 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgtgacgagtaatt 100
|||||||||||||||||||| ||| |||||||
Sbjct: 60 tctagatacatccatttctgcgacaagtaatt 29
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 70.3 bits (35), Expect = 5e-12
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtatttwagttctagatacatccatttctgtgacgagtaatttg 102
|||||| ||||||||||||||| ||||||||| |||||||||| |||| |||||||
Sbjct: 78 atggatatatctagatgtattttagttctagacacatccattttgatgacaagtaattct 19
Query: 103 gaacggagggagt 115
| |||||||||||
Sbjct: 18 ggacggagggagt 6
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 68.3 bits (34), Expect = 2e-11
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 6 catatactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttw 65
|||||||||||| || | ||| ||||||||| || ||| || |||||||||||||||
Sbjct: 125 catatactccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtatttt 66
Query: 66 agttctagatacatccattt 85
| ||||||||||||||||||
Sbjct: 65 aattctagatacatccattt 46
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 66.3 bits (33), Expect = 8e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtatttwagttctagatacatccattt 85
|||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 38 atgggtgtatctagatgtattttagttctagatacattcattt 80
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 66.3 bits (33), Expect = 8e-11
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 29 tacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccatttct 87
||||||||| | | ||||||||||||||||| |||| ||||||| |||||| |||||||
Sbjct: 102 tacttgtcgaaagaatggatgtatctagatgcattttagttctaaatacattcatttct 44
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 66.3 bits (33), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 45 ggatgtatctagatgtatttwagttctagatacat 79
|||||||||||||||||||| ||||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatacat 52
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 66.3 bits (33), Expect = 8e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtatttwagttctagatacatccattt 85
||||||||||||||| |||||| | ||||||||||||||||||
Sbjct: 38 atggatgtatctagacgtattttacttctagatacatccattt 80
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 64.3 bits (32), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 29 tacttgtcgcaggtatggatgtatcta-gatgtatttwagttctagatacatccattt 85
|||||||| ||| ||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct: 103 tacttgtccgaggaatggatgtatcaaagatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 64.3 bits (32), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 45 ggatgtatctagatgtatttwagttctagataca 78
|||||||||||||||||||| |||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagataca 53
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 62.3 bits (31), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtatttwagttctagatacat 79
|||||||||||||||||| ||||||||||||||
Sbjct: 79 atgtatctagatgtattttagttctagatacat 47
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 62.3 bits (31), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 45 ggatgtatctagatgtatttwagttctagatacatcc 81
|||||||||||||||||||| ||||||| ||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctaaatacatcc 50
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 62.3 bits (31), Expect = 1e-09
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 29 tacttgtcgcaggtatggatgtatctagatgtatttwagttctagatacatccattt 85
|||||||| ||| ||| ||||||||||||||||| | ||||||||||||||||||
Sbjct: 102 tacttgtcataggaatgtatgtatctagatgtattataattctagatacatccattt 46
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 60.3 bits (30), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 10 tactccctttgttctgaattacttgtcgcaggtatggatgtatctagatgtatttwagtt 69
|||||||| |||| |||||||| ||| || ||| |||||||||||||||||| | ||
Sbjct: 121 tactccctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaatt 62
Query: 70 ctagatacatccattt 85
|||||||||||||||
Sbjct: 61 gtagatacatccattt 46
Score = 56.3 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 78 atccatttctgtgacgagtaatttggaacggaggga 113
|||||||| ||||||||||||||| |||||||||||
Sbjct: 43 atccatttttgtgacgagtaatttcgaacggaggga 8
Score = 54.3 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgtgacgagtaatttggaacggagggagt 115
||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 74 tctagatacattcatttcttggacgagtaattctgaacggagggagt 120
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 60.3 bits (30), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 45 ggatgtatctagatgtatttwagttctagatacatc 80
|||||||||||||||||||| ||||||| |||||||
Sbjct: 61 ggatgtatctagatgtattttagttctacatacatc 96
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 60.3 bits (30), Expect = 5e-09
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 25 gaattacttgtcgcaggtatggatgtatctagatgtatttw-agttctagatacatccat 83
|||||||||| |||| ||||||||||||||| | |||| ||||||||||||||||||
Sbjct: 98 gaattacttgccgcaaaaatggatgtatctagacgcatttttagttctagatacatccat 39
Query: 84 ttct 87
||||
Sbjct: 38 ttct 35
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 58.3 bits (29), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtatttwagttctagatacatccattt 85
|||||||||||| ||||| |||||||||||||| |||||
Sbjct: 84 atgtatctagatatattttagttctagatacattcattt 46
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 56.3 bits (28), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 46 gatgtatctagatgtatttwagttctagatacat 79
||||||||||||||||||| | ||||||||||||
Sbjct: 85 gatgtatctagatgtattttaattctagatacat 52
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 54.3 bits (27), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 50 tatctagatgtatttwagttctagatacatccatttc 86
||||||||||||||| ||||||| |||| ||||||||
Sbjct: 71 tatctagatgtattttagttctaaatacgtccatttc 35
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 54.3 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtatttwagttctagatacatccattt 85
||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 74 atgtatctagacgtatttcagtgctagatacatccattt 36
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 52.3 bits (26), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 46 gatgtatctagatgtatttwagttctagatacatccattt 85
|||||||||||| |||||| ||||||| |||||| |||||
Sbjct: 41 gatgtatctagacgtattttagttctaaatacattcattt 80
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 52.3 bits (26), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ggatgtatctagatgtatttwagttctagata 76
|||||||| ||||||||||| |||||||||||
Sbjct: 49 ggatgtatttagatgtattttagttctagata 80
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 52.3 bits (26), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 45 ggatgtatctagatgtatttwagttctagatacatc 80
||||||||||||| ||||| |||||||||||||||
Sbjct: 50 ggatgtatctagacatattttagttctagatacatc 85
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 50.3 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 91 acgagtaatttggaacggagggagt 115
|||||||||||||||||||||||||
Sbjct: 30 acgagtaatttggaacggagggagt 6
Score = 44.4 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 90 gacgagtaatttggaacggagggagt 115
|||||||||||||||| |||||||||
Sbjct: 53 gacgagtaatttggaatggagggagt 78
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 50.3 bits (25), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtatttwagttctagatacatccattt 85
|||||| |||| |||||| ||||||| ||||||||||||
Sbjct: 84 atgtatttagacgtattttagttctacatacatccattt 46
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.3 bits (24), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtatttwagttctagatacatc 80
|||||| ||||||||||| |||||||| ||||||
Sbjct: 84 atgtatatagatgtattttagttctaggtacatc 51
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 48.3 bits (24), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtatttwagttctagatacatc 80
|||||||||||| ||||| |||||||| ||||||
Sbjct: 84 atgtatctagatatattttagttctaggtacatc 51
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 48.3 bits (24), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtatttwagttctagatacatccatt 84
||||||| ||||||| ||||| |||| ||||||||||||||
Sbjct: 38 atggatgaatctagacttattttagttatagatacatccatt 79
>RF00906;MIR1122;DQ537335.1/11354-11447 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 46.3 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 tgacgagtaatttggaacggagggagt 115
||||||||||||||||| |||||||||
Sbjct: 63 tgacgagtaatttggaagggagggagt 89
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 44.4 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 agtaatttggaacggagggagt 115
||||||||||||||||||||||
Sbjct: 109 agtaatttggaacggagggagt 130
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 44.4 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 agtaatttggaacggagggagt 115
||||||||||||||||||||||
Sbjct: 109 agtaatttggaacggagggagt 130
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.4 bits (22), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 46 gatgtatctagatgtatttwagttctagatacatcc 81
||||||||||||||||| | |||| |||||| ||||
Sbjct: 51 gatgtatctagatgtatattagttttagatatatcc 86
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 44.4 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 agtaatttggaacggagggagt 115
||||||||||||||||||||||
Sbjct: 110 agtaatttggaacggagggagt 131
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.4 bits (22), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtatttwagttctagatacatcca 82
||||||||||| ||||| |||| ||||||||||||
Sbjct: 83 atgtatctagacttattttagttatagatacatcca 48
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.4 bits (22), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 46 gatgtatctagatgtatttwagttctagatacatccattt 85
|||||||||||| ||||| | || |||||||||||||||
Sbjct: 41 gatgtatctagacttattttacttatagatacatccattt 80
