miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 81.8 bits (41), Expect = 2e-15
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgt-ntttag-tct 69
|||||||||| | ||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 109 ctccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagttct 50
Query: 70 aaatacatcca-tcctgcgacgagtaatttgg 100
| ||||||||| | | ||||||||||||||||
Sbjct: 49 agatacatccatttcagcgacgagtaatttgg 18
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 71.9 bits (36), Expect = 2e-12
Identities = 89/103 (86%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgt-ntttag-tct 69
|||||||||| |||||||||| ||||||| |||||||||||||||||| ||||| | |
Sbjct: 7 ctccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagtttt 66
Query: 70 aaatacatcca-tcctgcgacgagtaatttggaagggagggag 111
| ||| ||||| | ||| |||||||||||||||| ||||||||
Sbjct: 67 agatatatccatttctgagacgagtaatttggaacggagggag 109
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 69.9 bits (35), Expect = 7e-12
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatct 54
|||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 141 ctccctccgttccgaattacttgtcgcaggtatggatgtatct 99
Score = 48.1 bits (24), Expect = 3e-05
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 72 atacatccat-cctgcgacgagtaatttggaagggagggagtac 114
|||||||||| |||||||| ||||||| |||| |||||||||||
Sbjct: 101 atacatccatacctgcgacaagtaattcggaacggagggagtac 144
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 69.9 bits (35), Expect = 7e-12
Identities = 79/90 (87%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 27 attacttgtcgcaggtatggatgtatctagatgtnttt-agt-ctaaatacatccatc-c 83
|||||||||| || ||||||||||||||||||| ||| ||| ||| |||||||||| |
Sbjct: 21 attacttgtctcacatatggatgtatctagatgtattttagttctagatacatccatttc 80
Query: 84 tgcgacgagtaatttggaagggagggagta 113
|||||||||||||||||| ||||||||||
Sbjct: 81 agcgacgagtaatttggaacggagggagta 110
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtnttt-agtc-taaatacatccatc-ctgcgacgagtaatttg 99
|||||||||||||||||| ||| ||| || |||||||||| |||||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatccatttctgcgacgagtaatttg 97
Query: 100 gaagggagggagtacc 115
||| ||||||||||||
Sbjct: 98 gaacggagggagtacc 113
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 60.0 bits (30), Expect = 7e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgtnttt 64
|||||||||||| ||| ||||||||| || |||||||||||||||||| |||
Sbjct: 7 ctccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattt 59
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 60.0 bits (30), Expect = 7e-09
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgtnttt 64
|||||||||||| ||| ||||||||| || |||||||||||||||||| |||
Sbjct: 119 ctccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattt 67
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 14 ccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgtnttt-agt-ctaa 71
|||||||| | ||||||||||||||| |||||||||||| |||||| ||| ||| |||
Sbjct: 107 ccctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctag 48
Query: 72 atacatccatcctg-cgacgagtaatttggaa 102
|||||||||| | |||||||||||||||||
Sbjct: 47 atacatccattttaacgacgagtaatttggaa 16
>RF00906;MIR1122;DQ537335.1/11354-11447 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 87 gacgagtaatttggaagggagggagta 113
|||||||||||||||||||||||||||
Sbjct: 64 gacgagtaatttggaagggagggagta 90
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctaga 57
|||||||||| ||||||||||||||| | |||||||||||||||
Sbjct: 109 ctccctccgttctgaattacttgtcgaaaaaatggatgtatctaga 64
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctaga 57
|||||||||| | |||||||||||| || |||||||||||||||
Sbjct: 7 ctccctccgttccgaattacttgtctcaaaaatggatgtatctaga 52
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctaga 57
|||||||||| | |||||||||||| ||| |||||||||||||||
Sbjct: 109 ctccctccgttcggaattacttgtctcagaaatggatgtatctaga 64
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 52.0 bits (26), Expect = 2e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgtnttt 64
||||||| |||| ||| |||||||||| | |||||||||||||||||| |||
Sbjct: 7 ctccctctgtcccgaaatacttgtcgcggaaatggatgtatctagatgtattt 59
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgtnttt 64
||||| |||||| ||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 7 ctcccgccgtccggaaatacttgtcataggaatggatgtatctagatgtattt 59
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 13 tccctccgtcctgaattacttgtcgcaggtatggatgtatctaga 57
||||||||| | ||||||||||||| || |||||||||||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctaga 52
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 86 cgacgagtaatttggaagggagggagtac 114
||||||||||||||||| |||||||||||
Sbjct: 52 cgacgagtaatttggaatggagggagtac 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 88 acgagtaatttggaagggagggagta 113
||||||||||||||| ||||||||||
Sbjct: 30 acgagtaatttggaacggagggagta 5
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 25 gaattacttgtcgcaggtatggatgtatctaga 57
|||||||||||||||| |||||||||||||||
Sbjct: 28 gaattacttgtcgcagaaatggatgtatctaga 60
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 25 gaattacttgtcgcaggtatggatgtatctagatgtnttt 64
|||||||||||||||| ||| |||||||||||||| |||
Sbjct: 96 gaattacttgtcgcagaaatgaatgtatctagatgtattt 57
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctaga 57
|||||||| | | |||||||||||| | | ||||||||||||||||
Sbjct: 7 ctccctccattcggaattacttgtctcggatatggatgtatctaga 52
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 6 atcattctccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgtnttt 64
||||| |||||| ||||| ||| |||||||| | | |||||||||||||||||| |||
Sbjct: 1 atcatactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattt 59
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 ctccctccgtcctgaattacttgtcg 37
|||||||||||||||| |||||||||
Sbjct: 7 ctccctccgtcctgaaatacttgtcg 32
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgtnttt 64
|||||||||||| ||| ||||||||| || ||| || ||||||||||| |||
Sbjct: 119 ctccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtattt 67
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctaga 57
|||||||||| | |||||||||||||| |||||||||||||||
Sbjct: 109 ctccctccgttcggaattacttgtcgcgaaaatggatgtatctaga 64
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctagatgtnttt 64
||||||| |||| ||| || ||||| ||| |||||||||||||||||| |||
Sbjct: 7 ctccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattt 59
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctaga 57
|||||||||||| |||||| ||||| || |||||||||||||||
Sbjct: 119 ctccctccgtccggaattatttgtcatagaaatggatgtatctaga 74
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 ctccctccgtcctgaattacttgtcgcaggtatggatgtatctaga 57
|||||||||||| ||||| |||||| || |||||||||||||||
Sbjct: 7 ctccctccgtccgaaattatttgtcggagaaatggatgtatctaga 52
