miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 129 bits (65), Expect = 1e-29
Identities = 83/89 (93%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 106 cctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagttctaga 47
Query: 85 tacatccatttctgtgacgagtaatttgg 113
|||||||||||| | ||||||||||||||
Sbjct: 46 tacatccatttcagcgacgagtaatttgg 18
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 123 bits (62), Expect = 7e-28
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 37 attacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccatttc 96
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 21 attacttgtctcacatatggatgtatctagatgtattttagttctagatacatccatttc 80
Query: 97 tgtgacgagtaatttggaacgg 118
| |||||||||||||||||||
Sbjct: 81 agcgacgagtaatttggaacgg 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctaga 67
||||| |||| ||||||| ||||| || |||||||||||||||
Sbjct: 105 cctccgttccaaattactcgtcgctgaaatggatgtatctaga 63
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 123 bits (62), Expect = 7e-28
Identities = 86/94 (91%)
Strand = Plus / Plus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| ||| |||||||| |||||||| ||||||||||||||||||||||||||| || |
Sbjct: 10 cctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagttttaga 69
Query: 85 tacatccatttctgtgacgagtaatttggaacgg 118
|| ||||||||||| |||||||||||||||||||
Sbjct: 70 tatatccatttctgagacgagtaatttggaacgg 103
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 79 tctaaatacatccatttctgtgacgagtaatttggaacggnnngagtagta 129
|||| ||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 52 tctagatacatccatttctgcgacgagtaattcagaacggagggagtagta 2
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 117 bits (59), Expect = 4e-26
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 20 tatttcctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagtt 79
|||| ||||| |||||||||||| ||| | | |||||||||||||||||||||||||||
Sbjct: 5 tattccctccgttccgaattactcgtccaataaatggatgtatctagatgtattttagtt 64
Query: 80 ctaaatacatccatttctgtgacgagtaatttggaacgg 118
|| ||||||||||||||| |||||||||||||||||||
Sbjct: 65 atagatacatccatttctgcgacgagtaatttggaacgg 103
Score = 52.0 bits (26), Expect = 2e-06
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| |||| ||||||| |||||||| ||||||||||||| | || || |||| |
Sbjct: 106 cctccgttccaaattactcgtcgcagaaatggatgtatctataactaaaatacatctaga 47
Query: 85 tacatccatttctgtgacgagtaatttggaacgg 118
||||||||||| | ||||||||||| |||||||
Sbjct: 46 tacatccatttattggacgagtaattcggaacgg 13
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 109 bits (55), Expect = 1e-23
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
Sbjct: 106 cctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctaga 47
Query: 85 tacatccatttctgtgacgagtaatttggaa 115
||||||||||| ||||||||||||||||
Sbjct: 46 tacatccattttaacgacgagtaatttggaa 16
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 95.6 bits (48), Expect = 2e-19
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 31 ttccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatc 90
|||||||||||||||| |||||||| || ||| || |||||||||||||||| ||| ||
Sbjct: 16 ttccgaattacttgtcacagatatgaatatatataaatgtattttagttctagatatatt 75
Query: 91 catttctgtgacgagtaatttgga 114
|||||||| |||||||||||||||
Sbjct: 76 catttctgcgacgagtaatttgga 99
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatct 64
||||| |||||||||||||||||||| |||||||||||||
Sbjct: 138 cctccgttccgaattacttgtcgcaggtatggatgtatct 99
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 95.6 bits (48), Expect = 2e-19
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 35 gaattacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccatt 94
||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 96 gaattacttgtcgcagaaatgaatgtatctagatgtattttagttctagatacatccata 37
Query: 95 tctgtgacgagtaatt 110
|| | ||| |||||||
Sbjct: 36 tccgagacaagtaatt 21
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctaga 67
||||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 10 cctccattcggaattacttgtctcggatatggatgtatctaga 52
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 93.7 bits (47), Expect = 6e-19
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| || ||||||| | |||||||| || ||||||||||| ||||||||||||||| |
Sbjct: 10 cctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagttctaga 69
Query: 85 tacatccatttctgtgacgagtaattt 111
||||| |||||||| ||||||||||||
Sbjct: 70 tacattcatttctgcgacgagtaattt 96
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 91.7 bits (46), Expect = 2e-18
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| ||| ||||||||||||| | | ||||||||||||||| ||||||||||||| |
Sbjct: 106 cctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagttctaga 47
Query: 85 tacatccatttctgtgacgagtaatttggaacgg 118
||||||||||| || ||| ||||||| |||||||
Sbjct: 46 tacatccatttttgagacaagtaattcggaacgg 13
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctaga 67
||||| |||||||||||||||| || | |||||||||||||||
Sbjct: 10 cctccgttccgaattacttgtctcaaaaatggatgtatctaga 52
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 91.7 bits (46), Expect = 2e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 33 ccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatcca 92
||||| |||||||||| || |||||||||||||||||||||| ||||||| |||||||||
Sbjct: 18 ccgaaatacttgtcgcggaaatggatgtatctagatgtatttcagttctagatacatcca 77
Query: 93 tttctgtgacgagtaatt 110
||||| ||| |||||||
Sbjct: 78 tttctacgacaagtaatt 95
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 35 gaattacttgtcgcagatatggatgtatctaga 67
||||||||||||| ||| |||||||||||||||
Sbjct: 96 gaattacttgtcgtagaaatggatgtatctaga 64
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 85.7 bits (43), Expect = 2e-16
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 20 tatttcctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagtt 79
|||| ||||| ||| ||||||||||||| ||| ||||||||||||||| | ||| ||||
Sbjct: 5 tattccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagtt 64
Query: 80 ctaaatacatccatttctgtgacgagtaatttggaacgg 118
||| |||||||||||| || ||| ||||||| |||||||
Sbjct: 65 ctagatacatccatttatgcgacaagtaattcggaacgg 103
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 31 ttccgaattacttgtcgcagatatggatgtatctaga 67
||||||||||||||||||| | |||||||||||||||
Sbjct: 100 ttccgaattacttgtcgcataaatggatgtatctaga 64
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 85.7 bits (43), Expect = 2e-16
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| ||| |||||||||||| |||| ||||||||||||||| |||||||||||||| |
Sbjct: 106 cctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagttctaga 47
Query: 85 tacatccattt 95
|| ||||||||
Sbjct: 46 tagatccattt 36
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 36 aattacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccattt 95
||||| |||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 21 aattatttgtcggagaaatggatgtatctagacgtattttagttctagatacatccattt 80
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccattt 95
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttctagatacatccattt 80
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccattt 95
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 88 atggatgtatctagatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 77.8 bits (39), Expect = 4e-14
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| ||| |||||||||||||| | ||||||||||||||| |||||||||||||| |
Sbjct: 106 cctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtattttagttctaga 47
Query: 85 tacatccattt 95
|||||| ||||
Sbjct: 46 tacatctattt 36
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 35 gaattacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccatt 94
|||||| ||||| ||| ||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 106 gaattatttgtcatagaaatggatgtatctagacgtattttagttctagatacatccatt 47
Query: 95 tct 97
|||
Sbjct: 46 tct 44
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccattt 95
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttctagatacatccattt 80
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 75.8 bits (38), Expect = 1e-13
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 30 attccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaatacat 89
|||| ||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||
Sbjct: 23 attcggaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacat 82
Query: 90 ccattt 95
|||||
Sbjct: 83 tcattt 88
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 73.8 bits (37), Expect = 6e-13
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 55 ggatgtatctagatgtattttagttctaaatacatcc 91
|||||||||||||||||||||||||||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctaaatacatcc 50
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccatttct 97
||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatccatttct 82
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccatttct 97
||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 88 atggatgtatctagatgcattttagttctaaatacattcatttct 44
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| ||| |||||| ||||||| | || ||| |||||||||||||||||||||||||
Sbjct: 106 cctccgttcggaattaattgtcgcgaaaatagatatatctagatgtattttagttctaaa 47
Query: 85 tacatccatttc 96
||| ||||||||
Sbjct: 46 tacgtccatttc 35
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 34 cgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccat 93
||||||| ||||| || |||| |||||||||||| ||||||| ||||| |||||| |||
Sbjct: 97 cgaattatttgtcataggtatgaatgtatctagatttattttaattctagatacattcat 38
Query: 94 ttctgtgacgagtaatttggaacg 117
||||| ||||||||||| |||||
Sbjct: 37 ttctgcaacgagtaatttagaacg 14
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccattt 95
|||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 38 atggatgtatctagatgtattttagttctagatatatccattt 80
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 69.9 bits (35), Expect = 9e-12
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 36 aattacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccattt 95
||||||| ||| ||| ||| ||||||||||||||||||||||| || ||||||||||||
Sbjct: 95 aattactcgtccaagaaatgaatgtatctagatgtattttagttatagatacatccattt 36
Query: 96 ctgtgacgagtaatt 110
| |||| |||||||
Sbjct: 35 ttatgacaagtaatt 21
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 39 tacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccattt 95
|||||||| ||| || |||||||||||| ||||||||||||||||||||| |||||
Sbjct: 24 tacttgtctgagaaattgatgtatctagacgtattttagttctaaatacattcattt 80
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 39 tacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccattt 95
||||||||| ||| ||| || ||||||||||||||||| ||||| ||||||||||||
Sbjct: 102 tacttgtcggagaaatgaatctatctagatgtattttaattctagatacatccattt 46
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 39 tacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatccattt 95
|||||||| ||| ||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 24 tacttgtcagagaaatggatgtatctagacgtattttacttctagatacatccattt 80
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 55 ggatgtatctagatgtattttagttctaaatacatc 90
|||||||||||||||||||||||||||| |||||||
Sbjct: 61 ggatgtatctagatgtattttagttctacatacatc 96
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 63.9 bits (32), Expect = 6e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 35 gaattacttgtcgcagatatggatgtatctagatgtatttt-agttctaaatacatccat 93
|||||||||| |||| | ||||||||||||||| | ||||| ||||||| ||||||||||
Sbjct: 98 gaattacttgccgcaaaaatggatgtatctagacgcatttttagttctagatacatccat 39
Query: 94 ttct 97
||||
Sbjct: 38 ttct 35
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 25 cctccattccgaattacttgtcgcagatatggatgtatctagatgtattttagttctaaa 84
||||| ||| |||||||| ||| ||| ||| |||||||||||||||||||| || || |
Sbjct: 116 cctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaattgtaga 57
Query: 85 tacatccattt 95
|||||||||||
Sbjct: 56 tacatccattt 46
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 88 atccatttctgtgacgagtaatttggaacgg 118
|||||||| ||||||||||||||| ||||||
Sbjct: 43 atccatttttgtgacgagtaatttcgaacgg 13
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccattt 95
|||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 78 atggatatatctagatgtattttagttctagacacatccattt 36
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccattt 95
||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 88 atggatgtacctagacgtattttagttctagatacatccattt 46
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccattt 95
|||| ||||||||||||||||||||||||| |||||| |||||
Sbjct: 38 atgggtgtatctagatgtattttagttctagatacattcattt 80
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 55 ggatgtatctagatgtattttagttctaaatacat 89
|||||||||||||||||||||||||||| ||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatacat 52
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 55 ggatgtatctagatgtattttagttctaaataca 88
|||||||||||||||||||||||||||| |||||
Sbjct: 86 ggatgtatctagatgtattttagttctagataca 53
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctaaatacat 89
|||||||||||||||||||||||||| ||||||
Sbjct: 79 atgtatctagatgtattttagttctagatacat 47
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 53 atggatgtatcta-gatgtattttagttctaaatacatccattt 95
||||||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 89 atggatgtatcaaagatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctaaatacatccattt 95
|||||| |||| |||||||||||||| ||||||||||||
Sbjct: 84 atgtatttagacgtattttagttctacatacatccattt 46
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctaaatacatccattt 95
|||||||||||| ||||||||||||| |||||| |||||
Sbjct: 84 atgtatctagatatattttagttctagatacattcattt 46
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctaaatacatccattt 95
||||||||||||||||| || ||||| ||||||||||||
Sbjct: 84 atgtatctagatgtattataattctagatacatccattt 46
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 56 gatgtatctagatgtattttagttctaaatacat 89
||||||||||||||||||||| ||||| ||||||
Sbjct: 85 gatgtatctagatgtattttaattctagatacat 52
>RF00906;MIR1122;EU282716.1/1526-1412 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 55 ggatgtatctagatgtattttagttctaaatacatcc 91
||||||||||||| |||||| ||| ||||||||||||
Sbjct: 40 ggatgtatctagacgtatttcagtgctaaatacatcc 76
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 ggatgtatctagatgtattttagttcta 82
|||||||| |||||||||||||||||||
Sbjct: 49 ggatgtatttagatgtattttagttcta 76
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 55 ggatgtatctagatgtattttagttctaaatacatc 90
||||||||||||| ||||||||||||| |||||||
Sbjct: 50 ggatgtatctagacatattttagttctagatacatc 85
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctaaatacatccattt 95
||||||||||| |||||| ||| ||| ||||||||||||
Sbjct: 74 atgtatctagacgtatttcagtgctagatacatccattt 36
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccattt 95
||||||| ||||| | |||||||||||||||||||| |||||
Sbjct: 38 atggatgcatctaaacatattttagttctaaatacattcattt 80
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttcta 82
|||||| |||||||||||||||||||
Sbjct: 84 atgtatatagatgtattttagttcta 59
>RF00906;MIR1122;AY951949.1/1544-1411 4568:Triticum monococcum
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttctaaata 86
||||||||| ||||||||||||| ||||||
Sbjct: 83 atgtatctaaatgtattttagttttaaata 54
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 57 atgtatctagatgtattttagttcta 82
|||||||||||| |||||||||||||
Sbjct: 84 atgtatctagatatattttagttcta 59
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 39 tacttgtcgcagatatggatgtatctagatgtattttagttctaaatacatcca 92
|||||||| ||| ||| ||||||||||| |||||||||| || |||||||||
Sbjct: 101 tacttgtcctagagatgaatgtatctagacttattttagttatagatacatcca 48
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 53 atggatgtatctagatgtattttagttctaaatacatccatt 94
||||||| ||||||| |||||||||| || |||||||||||
Sbjct: 38 atggatgaatctagacttattttagttatagatacatccatt 79
