miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 147 bits (74), Expect = 3e-35
Identities = 86/90 (95%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 110 actccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagttc 51
Query: 61 tagatacatccatttctacgacgagtaatt 90
|||||||||||||||| ||||||||||||
Sbjct: 50 tagatacatccatttcagcgacgagtaatt 21
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 127 bits (64), Expect = 3e-29
Identities = 85/92 (92%)
Strand = Plus / Minus
Query: 4 ccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttctag 63
|||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct: 107 ccctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctag 48
Query: 64 atacatccatttctacgacgagtaattgggaa 95
|||||||||||| ||||||||||||| ||||
Sbjct: 47 atacatccattttaacgacgagtaatttggaa 16
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 121 bits (61), Expect = 2e-27
Identities = 89/97 (91%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 4 ccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttctag 63
||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 9 ccctccgttccga-ttacttgtctcacatatggatgtatctagatgtattttagttctag 67
Query: 64 atacatccatttctacgacgagtaattgggaacggag 100
||||||||||||| |||||||||||| |||||||||
Sbjct: 68 atacatccatttcagcgacgagtaatttggaacggag 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctaga 47
|||||||||||||| ||||||| ||||| | ||| |||||||||||
Sbjct: 109 actccctccgttccaaattactcgtcgctgaaatggatgtatctaga 63
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 119 bits (60), Expect = 7e-27
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 6 actccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagttt 65
Query: 61 tagatacatccatttctacgacgagtaattgggaacggag 100
|||||| |||||||||| ||||||||||| |||||||||
Sbjct: 66 tagatatatccatttctgagacgagtaatttggaacggag 105
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 59 tctagatacatccatttctacgacgagtaattgggaacggag 100
||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 52 tctagatacatccatttctgcgacgagtaattcagaacggag 11
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 115 bits (58), Expect = 1e-25
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 3 tccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttcta 62
|||||||||||||||||||| ||| | ||| ||||||||||||||||||||||| ||
Sbjct: 8 tccctccgttccgaattactcgtccaataaatggatgtatctagatgtattttagttata 67
Query: 63 gatacatccatttctacgacgagtaattgggaacggag 100
||||||||||||||| |||||||||||| |||||||||
Sbjct: 68 gatacatccatttctgcgacgagtaatttggaacggag 105
Score = 63.9 bits (32), Expect = 4e-10
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
|||||||||||||| ||||||| ||||||| ||| ||||||||| | || || ||
Sbjct: 110 actccctccgttccaaattactcgtcgcagaaatggatgtatctataactaaaatacatc 51
Query: 61 tagatacatccatttctacgacgagtaattgggaacggag 100
||||||||||||||| | ||||||||||| |||||||||
Sbjct: 50 tagatacatccatttattggacgagtaattcggaacggag 11
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 107 bits (54), Expect = 3e-23
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||| |||||||||||||||||| ||| ||||||| ||| || ||||||||||||||
Sbjct: 6 actcccttcgttccgaattacttgtcacagatatgaatatatataaatgtattttagttc 65
Query: 61 tagatacatccatttctacgacgagtaatt 90
|||||| || ||||||| ||||||||||||
Sbjct: 66 tagatatattcatttctgcgacgagtaatt 95
Score = 79.8 bits (40), Expect = 6e-15
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatct 44
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 142 actccctccgttccgaattacttgtcgcaggtatggatgtatct 99
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 107 bits (54), Expect = 3e-23
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
|||||||| || ||||| |||||||||| | ||| |||||||||||||||||| |||||
Sbjct: 6 actccctctgtcccgaaatacttgtcgcggaaatggatgtatctagatgtatttcagttc 65
Query: 61 tagatacatccatttctacgacgagtaatt 90
|||||||||||||||||||||| |||||||
Sbjct: 66 tagatacatccatttctacgacaagtaatt 95
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 105 bits (53), Expect = 1e-22
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 110 actccatccgtttggaattacttgtcgcagaaatgaatgtatctagatgtattttagttc 51
Query: 61 tagatacatccat 73
|||||||||||||
Sbjct: 50 tagatacatccat 38
Score = 52.0 bits (26), Expect = 1e-06
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||| ||| |||||||||||| | | |||| ||||||||||| || || ||
Sbjct: 6 actccctccattcggaattacttgtctcggatatggatgtatctagaactaaaatacatc 65
Query: 61 tagatacatccatttctacgacgagtaatt 90
||||||||| ||||||| |||| |||||||
Sbjct: 66 tagatacattcatttctgcgacaagtaatt 95
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 99.6 bits (50), Expect = 7e-21
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
|||||||||||| ||||||| | ||||||| || |||||||||| |||||||||||||
Sbjct: 6 actccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagttc 65
Query: 61 tagatacatccatttctacgacgagtaatt 90
||||||||| ||||||| ||||||||||||
Sbjct: 66 tagatacattcatttctgcgacgagtaatt 95
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 99.6 bits (50), Expect = 7e-21
Identities = 80/90 (88%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
|||| ||||||| ||||||| ||||| |||||||||||||||||||| ||||||| |||
Sbjct: 110 actctctccgtttcgaattatttgtcataggtatgaatgtatctagatttattttaattc 51
Query: 61 tagatacatccatttctacgacgagtaatt 90
||||||||| ||||||| | ||||||||||
Sbjct: 50 tagatacattcatttctgcaacgagtaatt 21
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 95.6 bits (48), Expect = 1e-19
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||||| ||||||||||||| | ||| ||||||||||| |||||||||||
Sbjct: 110 actccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagttc 51
Query: 61 tagatacatccatttctacgacgagtaattgggaacggag 100
||||||||||||||| | ||| ||||||| |||||||||
Sbjct: 50 tagatacatccatttttgagacaagtaattcggaacggag 11
Score = 63.9 bits (32), Expect = 4e-10
Identities = 83/100 (83%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
|||||||||||||||||||||||||| || ||| ||||||||||| || || ||
Sbjct: 6 actccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatgtc 65
Query: 61 tagatacatccatttctacgacgagtaattgggaacggag 100
||||||||||||||| | |||| ||||||| ||||||||
Sbjct: 66 tagatacatccattttttcgacaagtaattcagaacggag 105
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 93.7 bits (47), Expect = 4e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||| | ||| ||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 6 actccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagttc 65
Query: 61 tagatacatccattt 75
|||||||||||||||
Sbjct: 66 tagatacatccattt 80
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 93.7 bits (47), Expect = 4e-19
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||| | ||| ||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 120 actccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagttc 61
Query: 61 tagatacatccattt 75
|||||||||||||||
Sbjct: 60 tagatacatccattt 46
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 93.7 bits (47), Expect = 4e-19
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||||| |||||||||||| ||| ||| ||||||||||| ||||||||||||
Sbjct: 110 actccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagttc 51
Query: 61 tagatacatccattt 75
|||||| ||||||||
Sbjct: 50 tagatagatccattt 36
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtc 26
||||||||||||| ||||||||||||
Sbjct: 6 actccctccgttcggaattacttgtc 31
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 59 tctagatacatccatttctacgacgagtaattgggaacggag 100
||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 64 tctagatacatccatttctgagacaagtaattccgaacggag 105
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 89.7 bits (45), Expect = 7e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 3 tccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttcta 62
||||||||||| ||||||||||||| || ||| ||||||||||| | ||| |||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttcta 67
Query: 63 gatacatccatttctacgacgagtaattgggaacgga 99
||||||||||||| | |||| ||||||| ||||||||
Sbjct: 68 gatacatccatttatgcgacaagtaattcggaacgga 104
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 59 tctagatacatccatttctacgacgagtaattgggaacggag 100
|||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 52 tctagatacatccatttctacgacaagtaattccgaacggag 11
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 87.7 bits (44), Expect = 3e-17
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 33 atgaatgtatctagatgtattttagttctagatacatccatttctacgacgagtaattgg 92
||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||||
Sbjct: 78 atgaatgtatctagatgtattttagttatagatacatccatttttatgacaagtaattcc 19
Query: 93 gaacggag 100
||||||||
Sbjct: 18 gaacggag 11
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtc 26
||||||||||||| ||||||||||||
Sbjct: 6 actccctccgttcggaattacttgtc 31
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||||| |||||||| ||| || |||||||||||||||||||||||| ||
Sbjct: 120 actccctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaattg 61
Query: 61 tagatacatccattt 75
|||||||||||||||
Sbjct: 60 tagatacatccattt 46
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 59 tctagatacatccatttctacgacgagtaattgggaacggag 100
||||||||||| ||||||| ||||||||||| ||||||||
Sbjct: 74 tctagatacattcatttcttggacgagtaattctgaacggag 115
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||| | ||| ||||||||| || |||||| ||||||||||||||||| |||
Sbjct: 120 actccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtattttaattc 61
Query: 61 tagatacatccattt 75
|||||||||||||||
Sbjct: 60 tagatacatccattt 46
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 110 actccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtattttagttc 51
Query: 61 tagatacatccattt 75
|||||||||| ||||
Sbjct: 50 tagatacatctattt 36
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
|||||| |||| | ||| |||||||| ||| ||| ||||||||||||||||||||||||
Sbjct: 6 actcccgccgtccggaaatacttgtcataggaatggatgtatctagatgtattttagttc 65
Query: 61 tagatacatccattt 75
|||||||||||||||
Sbjct: 66 tagatacatccattt 80
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||| | |||||| ||||| || ||| ||||||||||| ||||||||||||
Sbjct: 120 actccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttagttc 61
Query: 61 tagatacatccatttct 77
|||||||||||||||||
Sbjct: 60 tagatacatccatttct 44
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||| | ||||| |||||| || ||| ||||||||||| ||||||||||||
Sbjct: 6 actccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttagttc 65
Query: 61 tagatacatccattt 75
|||||||||||||||
Sbjct: 66 tagatacatccattt 80
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 37 atgtatctagatgtattttagttctagatacatccatttcta 78
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 42 atgtatctagatgtattttagttatagatacatccatttcta 83
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
|||||||| || | ||| |||||||| ||| ||| ||||| ||||| ||||||||||||
Sbjct: 120 actccctctgtccggaaatacttgtcagaggaatggatgtacctagacgtattttagttc 61
Query: 61 tagatacatccattt 75
|||||||||||||||
Sbjct: 60 tagatacatccattt 46
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 37 atgtatctagatgtattttagttctagatacatccattt 75
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 42 atgtatctagatgtattttagttctagatatatccattt 80
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 36 aatgtatctagatgtattttagttctagatacat 69
||||||||||||||||||||||||||||||||||
Sbjct: 80 aatgtatctagatgtattttagttctagatacat 47
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 38 tgtatctagatgtattttagttctagatacatccattt 75
|||||||||||||||||||||||||||||||| |||||
Sbjct: 43 tgtatctagatgtattttagttctagatacattcattt 80
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 65.9 bits (33), Expect = 1e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 15 gaattacttgtcgcaggtatgaatgtatctagatgtattttagttctagatacatccatt 74
|||||||||||||||| ||| ||||||||||| | |||||||||||||||||| ||||
Sbjct: 28 gaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacattcatt 87
Query: 75 t 75
|
Sbjct: 88 t 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 59 tctagatacatccatttctacgacgagtaatt 90
||||||||||||||||||| |||| |||||||
Sbjct: 60 tctagatacatccatttctgcgacaagtaatt 29
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 19 tacttgtcgcaggtatgaatgtatctagatgtattttagttctagatacatccattt 75
|||||||| ||| ||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 102 tacttgtcataggaatgtatgtatctagatgtattataattctagatacatccattt 46
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 37 atgtatctagatgtattttagttctagatacat 69
|||||||||||||||||||||||||||||||||
Sbjct: 84 atgtatctagatgtattttagttctagatacat 52
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 63.9 bits (32), Expect = 4e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatcta-gatgtattttagtt 59
||||||||||| | || |||||||| ||| ||| ||||||| | ||||||||||||||
Sbjct: 121 actccctccgtccgaaaatacttgtccgaggaatggatgtatcaaagatgtattttagtt 62
Query: 60 ctagatacatccattt 75
||||||||||||||||
Sbjct: 61 ctagatacatccattt 46
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 40 tatctagatgtattttagttctagatacatccattt 75
||||||||||||||||||||||||| ||||||||||
Sbjct: 71 tatctagatgtattttagttctagacacatccattt 36
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 37 atgtatctagatgtattttagttctagataca 68
||||||||||||||||||||||||||||||||
Sbjct: 84 atgtatctagatgtattttagttctagataca 53
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||| | ||| |||||||| || ||||||||||||||| ||||||||||
Sbjct: 119 actccctccgtccggaaatacttgtcctagagatgaatgtatctagacttattttagtta 60
Query: 61 tagatacatcca 72
||||||||||||
Sbjct: 59 tagatacatcca 48
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 63.9 bits (32), Expect = 4e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 15 gaattacttgtcgcaggtatgaatgtatctagatgtatttt-agttctagatacatccat 73
|||||||||| |||| ||| ||||||||||| | ||||| ||||||||||||||||||
Sbjct: 98 gaattacttgccgcaaaaatggatgtatctagacgcatttttagttctagatacatccat 39
Query: 74 ttctacga 81
||||||||
Sbjct: 38 ttctacga 31
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 19 tacttgtcgcaggtatgaatgtatctagatgtattttagttctagatacatccatttcta 78
||||||||| | | ||| ||||||||||||| |||||||||||| |||||| ||||||||
Sbjct: 102 tacttgtcgaaagaatggatgtatctagatgcattttagttctaaatacattcatttcta 43
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 33 atgaatgtatctagatgtattttagttctagatacatccattt 75
|||||||||| |||| |||||||||||||| ||||||||||||
Sbjct: 88 atgaatgtatttagacgtattttagttctacatacatccattt 46
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 37 atgtatctagatgtattttagttctagatacatcc 71
|||||||||||||||||||||||||| ||||||||
Sbjct: 84 atgtatctagatgtattttagttctaaatacatcc 50
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 37 atgtatctagatgtattttagttctagatacatccattt 75
|||||||||||| |||||||||||||||||||| |||||
Sbjct: 84 atgtatctagatatattttagttctagatacattcattt 46
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 37 atgtatctagatgtattttagttctagatacatccattt 75
||||||||||| |||||||| ||||||||||||||||||
Sbjct: 42 atgtatctagacgtattttacttctagatacatccattt 80
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 37 atgtatctagatgtattttagttctagatacatc 70
|||||||||||||||||||||||||| |||||||
Sbjct: 63 atgtatctagatgtattttagttctacatacatc 96
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 60.0 bits (30), Expect = 6e-09
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtcgcaggtatgaatgtatctagatgtattttagttc 60
||||||||||||| ||| |||||||| | ||||||||||||||| ||||||||||
Sbjct: 119 actccctccgttcggaaatacttgtcctaaaaatgaatgtatctagacttattttagtta 60
Query: 61 tagatacatc 70
||||||||||
Sbjct: 59 tagatacatc 50
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 40 tatctagatgtattttagttctagatacatccatttc 76
||||||||||||||||||||||| |||| ||||||||
Sbjct: 71 tatctagatgtattttagttctaaatacgtccatttc 35
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 37 atgtatctagatgtattttagttctagatacat 69
|||||||||||||||||||| ||||||||||||
Sbjct: 84 atgtatctagatgtattttaattctagatacat 52
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 35 gaatgtatctagatgtattttagttctagatacatc 70
|||||||| |||||||||||||||||||| ||||||
Sbjct: 86 gaatgtatatagatgtattttagttctaggtacatc 51
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 35 gaatgtatctagatgtattttagttctagatacatc 70
|||||||||||||| |||||||||||||| ||||||
Sbjct: 86 gaatgtatctagatatattttagttctaggtacatc 51
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 37 atgtatctagatgtattttagttctagatacatccattt 75
||||||||||| |||||||||||||| |||||| |||||
Sbjct: 42 atgtatctagacgtattttagttctaaatacattcattt 80
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 37 atgtatctagatgtattttagttctagatacatccattt 75
||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 74 atgtatctagacgtatttcagtgctagatacatccattt 36
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtc 26
||||||||||||||||||||||||||
Sbjct: 6 actccctccgttccgaattacttgtc 31
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtc 26
|||||||||||||| |||||||||||
Sbjct: 130 actccctccgttccaaattacttgtc 105
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 37 atgtatctagatgtattttagttctagata 66
|||||| |||||||||||||||||||||||
Sbjct: 51 atgtatttagatgtattttagttctagata 80
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 37 atgtatctagatgtattttagttctagatacatc 70
||||||||||| |||||||||||||||||||||
Sbjct: 52 atgtatctagacatattttagttctagatacatc 85
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 33 atgaatgtatctagatgtattttagttctagatacatccatt 74
||||||||||||| || |||||||||| | ||||||||||||
Sbjct: 87 atgaatgtatctaaatttattttagttatggatacatccatt 46
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 33 atgaatgtatctagatgtattttagttctagatacatccatt 74
|||||| |||||||| |||||||||| ||||||||||||||
Sbjct: 87 atgaatatatctagacttattttagttatagatacatccatt 46
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 37 atgtatctagatgtattttagttctagatacatcc 71
|||||||||||||||| |||||| |||||| ||||
Sbjct: 52 atgtatctagatgtatattagttttagatatatcc 86
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 37 atgtatctagatgtattttagttctagatacatccattt 75
||||||||||| ||||||| || |||||||||||||||
Sbjct: 42 atgtatctagacttattttacttatagatacatccattt 80
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 33 atgaatgtatctagatgtattttagttctagatac 67
|||||||||||||||| ||||||| || |||||||
Sbjct: 38 atgaatgtatctagatttattttaattatagatac 72
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 actccctccgttccgaattacttgtc 26
||||||||||||| ||||||||||||
Sbjct: 6 actccctccgttctgaattacttgtc 31
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 actccctccgttccgaattacttgtc 26
|||||||||||||| |||||||||||
Sbjct: 130 actccctccgttccaaattacttgtc 105
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 33 atgaatgtatctagatgtattttagttctagatacatc 70
||||||||||||||| |||||||||| || |||||||
Sbjct: 86 atgaatgtatctagacttattttagttatacatacatc 49
>RF00906;MIR1122;DQ257569.1/307-193 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 33 atgaatgtatctagatgtattttagttctagatacatc 70
||||| |||||||||||||||| || |||||||||||
Sbjct: 78 atgaaagtatctagatgtatttcggtgctagatacatc 41
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 41 atctagatgtattttagttctagatacatccatt 74
||||||| |||||||||| ||||||||||||||
Sbjct: 46 atctagacttattttagttatagatacatccatt 79
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 33 atgaatgtatctagatgtattttagttctagatacatccatt 74
||||||||||||||| |||| || || ||||||||||||||
Sbjct: 87 atgaatgtatctagacttattctaattgtagatacatccatt 46
