miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 159 bits (80), Expect = 1e-38
Identities = 93/96 (96%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 9 gtactcccaacgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagt 68
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gtactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagt 53
Query: 69 tctagatacatccatttcagcgacagagtaatttgg 104
|||||||||||||||||||||||| |||||||||||
Sbjct: 52 tctagatacatccatttcagcgac-gagtaatttgg 18
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 141 bits (71), Expect = 2e-33
Identities = 87/91 (95%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 27 attacttgtcgcacgtatggatgtatctagatgtattttagttctagatacatccatttc 86
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 attacttgtctcacatatggatgtatctagatgtattttagttctagatacatccatttc 80
Query: 87 agcgacagagtaatttggaacggaggtagta 117
|||||| ||||||||||||||||||| ||||
Sbjct: 81 agcgac-gagtaatttggaacggagggagta 110
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 127 bits (64), Expect = 4e-29
Identities = 83/88 (94%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 19 cgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagttctagataca 78
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 102 cgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctagataca 43
Query: 79 tccatttcagcgacagagtaatttggaa 106
||||||| | |||| |||||||||||||
Sbjct: 42 tccattttaacgac-gagtaatttggaa 16
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 109 bits (55), Expect = 9e-24
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccatttcagcgacagagtaattt 102
||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatccatttctgcgac-gagtaattt 96
Query: 103 ggaacggaggtagta 117
|||||||||| ||||
Sbjct: 97 ggaacggagggagta 111
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 101 bits (51), Expect = 2e-21
Identities = 91/103 (88%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 10 tactcccaacgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 69
||||||| ||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagtt 64
Query: 70 ctagatacatccatttcagcgacagagtaatttggaacggagg 112
|||||| ||||||||| | ||| |||||||||||||||||||
Sbjct: 65 ttagatatatccatttctgagac-gagtaatttggaacggagg 106
Score = 50.1 bits (25), Expect = 7e-06
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttcagcgacagagtaatttggaacggaggtagta 117
|||||||||||||||||| ||||| |||||||| ||||||||| ||||
Sbjct: 52 tctagatacatccatttctgcgac-gagtaattcagaacggagggagta 5
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 87.7 bits (44), Expect = 3e-17
Identities = 93/108 (86%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 10 tactcccaacgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 69
||||||| ||||| ||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagtt 52
Query: 70 ctagatacatccatttcagcgacagagtaatttggaacggaggtagta 117
|||||||||||||||| | |||| ||||||| |||||||||| ||||
Sbjct: 51 ctagatacatccatttttgagaca-agtaattcggaacggagggagta 5
Score = 50.1 bits (25), Expect = 7e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 9 gtactcccaacgttccgaattacttgtcgcacgtatggatgtatctaga 57
|||||||| |||||||||||||||||| || |||||||||||||||
Sbjct: 4 gtactccctccgttccgaattacttgtctcaaaaatggatgtatctaga 52
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 85.7 bits (43), Expect = 1e-16
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 25 gaattacttgtcgcacgtatggatgtatctagatgtattttagttctagatacatccat 83
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 96 gaattacttgtcgcagaaatgaatgtatctagatgtattttagttctagatacatccat 38
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccattt 85
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttctagatacatccattt 80
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttagttctagatacatccattt 85
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 atggatgtatctagatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccattt 85
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttctagatacatccattt 80
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 81.8 bits (41), Expect = 2e-15
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 9 gtactcccaacgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagt 68
|||||||| ||||| |||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 112 gtactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagt 53
Query: 69 tctagatacatccattt 85
|||||||| ||||||||
Sbjct: 52 tctagatagatccattt 36
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 79.8 bits (40), Expect = 8e-15
Identities = 83/96 (86%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 10 tactcccaacgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 69
||||||| |||||||||||||||||| || |||| || ||| || |||||||||||||
Sbjct: 5 tactcccttcgttccgaattacttgtcacagatatgaatatatataaatgtattttagtt 64
Query: 70 ctagatacatccatttcagcgacagagtaatttgga 105
||||||| || |||||| ||||| ||||||||||||
Sbjct: 65 ctagatatattcatttctgcgac-gagtaatttgga 99
Score = 69.9 bits (35), Expect = 8e-12
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 8 tgtactcccaacgttccgaattacttgtcgcacgtatggatgtatct 54
||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 145 tgtactccctccgttccgaattacttgtcgcaggtatggatgtatct 99
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 79.8 bits (40), Expect = 8e-15
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 10 tactcccaacgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 69
||||||| ||||| |||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtattttagtt 52
Query: 70 ctagatacatccattt 85
||||||||||| ||||
Sbjct: 51 ctagatacatctattt 36
Score = 44.1 bits (22), Expect = 4e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttcagcgacagagtaatttggaacggaggtagtat 118
||||||||||||||||| |||||| ||||||| ||||||||| |||||
Sbjct: 64 tctagatacatccattttcgcgaca-agtaattccgaacggagggagtat 112
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 79.8 bits (40), Expect = 8e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccatttc 86
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatccatttc 81
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 79.8 bits (40), Expect = 8e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccatttc 86
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 38 atggatgtatctagatgtatttcagttctagatacatccatttc 81
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 79.8 bits (40), Expect = 8e-15
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttagttctagatacatccatttc 86
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 88 atggatgtatctagacgtattttagttctagatacatccatttc 45
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccattt 85
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 38 atggatgtatctagatgtattttagttctagatatatccattt 80
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccattt 85
||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 38 atggatgtatctagacgtattttagttctagatacatccattt 80
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 75.8 bits (38), Expect = 1e-13
Identities = 81/94 (86%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 9 gtactcccaacgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagt 68
|||||||| |||| ||||||| | |||||| || ||||||||||| |||||||||||
Sbjct: 4 gtactccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagt 63
Query: 69 tctagatacatccatttcagcgacagagtaattt 102
||||||||||| |||||| ||||| |||||||||
Sbjct: 64 tctagatacattcatttctgcgac-gagtaattt 96
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 73.8 bits (37), Expect = 5e-13
Identities = 86/101 (85%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 19 cgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagttctagataca 78
||||| ||||||||||||| | ||||||||||||||| | ||| |||||||||||||
Sbjct: 14 cgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttctagataca 73
Query: 79 tccatttcagcgacagagtaatttggaacggaggtagtatg 119
||||||| |||||| ||||||| |||||||| | ||||||
Sbjct: 74 tccatttatgcgaca-agtaattcggaacggaagaagtatg 113
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 19 cgttccgaattacttgtcgcacgtatggatgtatctaga 57
||||||||||||||||||||| |||||||||||||||
Sbjct: 102 cgttccgaattacttgtcgcataaatggatgtatctaga 64
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 69.9 bits (35), Expect = 8e-12
Identities = 84/99 (84%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 19 cgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagttctagataca 78
|||| ||||||| ||||| | ||||| |||||||||||| ||||||| |||||||||||
Sbjct: 102 cgtttcgaattatttgtcataggtatgaatgtatctagatttattttaattctagataca 43
Query: 79 tccatttcagcgacagagtaatttggaacggaggtagta 117
| |||||| || || ||||||||| ||||| ||| ||||
Sbjct: 42 ttcatttctgcaac-gagtaatttagaacgaaggaagta 5
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttagttctagatacatccattt 85
|||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 78 atggatatatctagatgtattttagttctagacacatccattt 36
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttagttctagatacatccattt 85
||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 88 atggatgtacctagacgtattttagttctagatacatccattt 46
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccattt 85
|||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 38 atgggtgtatctagatgtattttagttctagatacattcattt 80
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatccattt 85
||||||||||||||||||||||| |||||||||||||||
Sbjct: 74 atgtatctagatgtattttagttatagatacatccattt 36
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 69.9 bits (35), Expect = 8e-12
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 45 ggatgtatctagatgtattttagttctagatacat 79
|||||||||||||||||||||||||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatacat 52
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccattt 85
||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 38 atggatgtatctagacgtattttacttctagatacatccattt 80
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 45 ggatgtatctagatgtattttagttctagataca 78
||||||||||||||||||||||||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagataca 53
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 29 tacttgtcgcacgtatggatgtatctagatgtattttagttctagatacatccatttc 86
||||||||| | | ||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct: 102 tacttgtcgaaagaatggatgtatctagatgcattttagttctaaatacattcatttc 45
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 65.9 bits (33), Expect = 1e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 25 gaattacttgtcgcacgtatggatgtatctagatgtattttagttctagatacatccatt 84
||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||||
Sbjct: 28 gaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacattcatt 87
Query: 85 t 85
|
Sbjct: 88 t 88
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacat 79
|||||||||||||||||||||||||||||||||
Sbjct: 79 atgtatctagatgtattttagttctagatacat 47
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 45 ggatgtatctagatgtattttagttctagatacatcc 81
|||||||||||||||||||||||||||| ||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctaaatacatcc 50
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 63.9 bits (32), Expect = 5e-10
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 43 atggatgtatcta-gatgtattttagttctagatacatccattt 85
||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 89 atggatgtatcaaagatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 45 ggatgtatctagatgtattttagttctagatacatc 80
|||||||||||||||||||||||||||| |||||||
Sbjct: 61 ggatgtatctagatgtattttagttctacatacatc 96
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 50 tatctagatgtattttagttctagatacatccattt 85
||||||||||||||||| ||||||||||||||||||
Sbjct: 81 tatctagatgtattttaattctagatacatccattt 46
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatccattt 85
|||||||||||||||||||| || |||||||||||||||
Sbjct: 84 atgtatctagatgtattttaattgtagatacatccattt 46
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 61.9 bits (31), Expect = 2e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 25 gaattacttgtcgcacgtatggatgtatctagatgtatttt-agttctagatacatccat 83
|||||||||| |||| ||||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 98 gaattacttgccgcaaaaatggatgtatctagacgcatttttagttctagatacatccat 39
Query: 84 ttc 86
|||
Sbjct: 38 ttc 36
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatccattt 85
|||||||||||| |||||||||||||||||||| |||||
Sbjct: 84 atgtatctagatatattttagttctagatacattcattt 46
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatccattt 85
||||||||||||||||| || ||||||||||||||||||
Sbjct: 84 atgtatctagatgtattataattctagatacatccattt 46
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 46 gatgtatctagatgtattttagttctagatacat 79
||||||||||||||||||||| ||||||||||||
Sbjct: 85 gatgtatctagatgtattttaattctagatacat 52
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 50 tatctagatgtattttagttctagatacatccatttc 86
||||||||||||||||||||||| |||| ||||||||
Sbjct: 71 tatctagatgtattttagttctaaatacgtccatttc 35
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 46 gatgtatctagatgtattttagttctagatacatccattt 85
|||||||||||| |||||||||||||| |||||| |||||
Sbjct: 41 gatgtatctagacgtattttagttctaaatacattcattt 80
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 45 ggatgtatctagatgtattttagttctagata 76
|||||||| |||||||||||||||||||||||
Sbjct: 49 ggatgtatttagatgtattttagttctagata 80
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 45 ggatgtatctagatgtattttagttctagatacatc 80
||||||||||||| |||||||||||||||||||||
Sbjct: 50 ggatgtatctagacatattttagttctagatacatc 85
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatccatttcagcgacag 94
||||||||||| |||||| ||| |||||||||||||||| | ||||||
Sbjct: 74 atgtatctagacgtatttcagtgctagatacatccatttgaacgacag 27
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatccattt 85
|||||| |||| |||||||||||||| ||||||||||||
Sbjct: 84 atgtatttagacgtattttagttctacatacatccattt 46
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatc 80
|||||| |||||||||||||||||||| ||||||
Sbjct: 84 atgtatatagatgtattttagttctaggtacatc 51
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatc 80
|||||||||||| |||||||||||||| ||||||
Sbjct: 84 atgtatctagatatattttagttctaggtacatc 51
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttagttctagatacatccatt 84
||||||| ||||||| |||||||||| ||||||||||||||
Sbjct: 38 atggatgaatctagacttattttagttatagatacatccatt 79
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 46 gatgtatctagatgtattttagttctagatacatcc 81
||||||||||||||||| |||||| |||||| ||||
Sbjct: 51 gatgtatctagatgtatattagttttagatatatcc 86
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatcca 82
||||||||||| |||||||||| ||||||||||||
Sbjct: 83 atgtatctagacttattttagttatagatacatcca 48
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 46 gatgtatctagatgtattttagttctagatacatccattt 85
|||||||||||| ||||||| || |||||||||||||||
Sbjct: 41 gatgtatctagacttattttacttatagatacatccattt 80
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 50 tatctagatgtattttagttctagatacatccatt 84
|||||||| |||||||||| ||||||||||||||
Sbjct: 80 tatctagacttattttagttatagatacatccatt 46
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatccatt 84
||||||||| || |||||||||| | ||||||||||||
Sbjct: 83 atgtatctaaatttattttagttatggatacatccatt 46
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttagttctagatacatc 80
||||||||||| |||||||||| ||||||||||
Sbjct: 83 atgtatctagacttattttagttatagatacatc 50
