miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 149 bits (75), Expect = 1e-35
Identities = 108/119 (90%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagt 74
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 122 atactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagt 63
Query: 75 tctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagtat 133
|||||||| || || |||||||||||||| |||||||||||| ||| ||||||||||
Sbjct: 62 tctagatacatccatttttatgcatttctacgacaagtattttgggacggagggagtat 4
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 147 bits (74), Expect = 5e-35
Identities = 107/118 (90%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgggggaatggatgtatctagatgtattttagtt 64
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagtat 133
||||||| || || |||||||||||||| |||||||||||| ||| ||||||||||
Sbjct: 65 ctagatacatccatttttatgcatttctacgacaagtattttgggacggagggagtat 122
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 143 bits (72), Expect = 8e-34
Identities = 108/120 (90%)
Strand = Plus / Minus
Query: 13 atatactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtatttta 72
|||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 124 atatactccctccgtccggaaatacttgtcggagaaatgaatctatctagatgtatttta 65
Query: 73 gttctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagta 132
||||||||| || || |||||| ||||| | ||||||||| |||| |||||||||||||
Sbjct: 64 attctagatacatccatttttatccatttatgcgacaagtaattccggacagagggagta 5
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 97 catttcttcgacaagtatttccagacagagggagtat 133
||||||| |||||||||||||| ||| ||||||||||
Sbjct: 86 catttctccgacaagtatttccggacggagggagtat 122
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 133 bits (67), Expect = 7e-31
Identities = 103/115 (89%)
Strand = Plus / Minus
Query: 17 actccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagttc 76
|||||||||||| | |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 115 actccctccgtctgaaaatactcgtcggaagaattaatgtatctagatgtattttagttc 56
Query: 77 tagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagt 131
|||||| ||| | ||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 55 tagatacatttatttttaggcatttctccgacaagtatttccgaacggagggagt 1
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 17 actccctccgtccggaaatactcgtcggaggaatg 51
||||||||||| |||||||||| ||||||| ||||
Sbjct: 1 actccctccgttcggaaatacttgtcggagaaatg 35
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 131 bits (66), Expect = 3e-30
Identities = 105/118 (88%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||| ||||||||||||| ||| |||||||| ||||| ||||| |||||||||||
Sbjct: 121 tactccctctgtccggaaatacttgtcagaggaatggatgtacctagacgtattttagtt 62
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagtat 133
||||||| || || |||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct: 61 ctagatacatccatttttatgcatttctccgacaagtatttcaggacggagggagtat 4
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 14 tatactccctccgtccggaaatactcgtcggaggaatg 51
|||||||||||||||| |||||||| ||||||| ||||
Sbjct: 3 tatactccctccgtcctgaaatacttgtcggagaaatg 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 106 gacaagtatttccagacagagggagta 132
||||||||||||| |||||||||||||
Sbjct: 95 gacaagtatttccggacagagggagta 121
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 121 bits (61), Expect = 3e-27
Identities = 106/121 (87%)
Strand = Plus / Plus
Query: 14 tatactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttag 73
||||||||||| ||||||||||| | ||| ||||||| |||||||||||||||||||||
Sbjct: 3 tatactccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattttag 62
Query: 74 ttctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagtat 133
|||||||||||| || |||||| ||||| | |||||||| |||| ||| ||||||||||
Sbjct: 63 ttctagatatatccatttttatccatttgtgtgacaagtaattccggacggagggagtat 122
Query: 134 g 134
|
Sbjct: 123 g 123
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 115 bits (58), Expect = 2e-25
Identities = 104/118 (88%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatcta-gatgtattttagt 74
||||||||||||||| ||||||| ||| |||||||| ||||||| | |||||||||||||
Sbjct: 122 tactccctccgtccgaaaatacttgtccgaggaatggatgtatcaaagatgtattttagt 63
Query: 75 tctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagta 132
|||||||| || || || ||| ||||||| |||||||||||||| ||| |||||||||
Sbjct: 62 tctagatacatccatttatatccatttctgcgacaagtatttccggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatactcgtcg 43
||||||||||||||||||||||| ||||
Sbjct: 5 tactccctccgtccggaaatacttgtcg 32
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 125
Score = 111 bits (56), Expect = 3e-24
Identities = 101/116 (87%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 5 tactcccgccgtccggaaatacttgtcataggaatggatgtatctagatgtattttagtt 64
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagt 131
||||||| || || |||||| |||| | ||||||||| ||| ||||||||||||
Sbjct: 65 ctagatacatccatttttatcaatttatgcgacaagtaattctggacagagggagt 120
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 111 bits (56), Expect = 3e-24
Identities = 104/120 (86%)
Strand = Plus / Plus
Query: 14 tatactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttag 73
||||||||||||||||| || || | ||||||| |||| ||||||||||| |||||||||
Sbjct: 3 tatactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttag 62
Query: 74 ttctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagtat 133
||||||||| || || |||||| ||||||| | ||||||| |||| ||| ||||||||||
Sbjct: 63 ttctagatacatccatttttatccatttctgcaacaagtagttccggacggagggagtat 122
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 89.7 bits (45), Expect = 1e-17
Identities = 100/117 (85%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||||||||| ||||||| ||| ||| ||| ||||||||||| |||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtctgagaaattgatgtatctagacgtattttagtt 64
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagta 132
||| ||| ||||| ||| || |||||| | ||||||| |||| |||||||||||||
Sbjct: 65 ctaaatacattcattttaatccatttcggc-acaagtaattccggacagagggagta 120
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 89.7 bits (45), Expect = 1e-17
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||||||||| |||| ||||||| | | ||||||| |||||||||||| ||||||||||
Sbjct: 121 tactccctccatccgaaaatacttggcataggaatgtatgtatctagatatattttagtt 62
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagta 132
||||||| ||||| |||||| |||| | ||||||||| |||| ||| || ||||||
Sbjct: 61 ctagatacattcatttttatatatttgtgcgacaagtaattccggacggacggagta 5
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 87.7 bits (44), Expect = 4e-17
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagt 74
||||||||| |||||||||||||| ||| | ||||| ||||||||||||||||||||||
Sbjct: 4 atactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattttagt 63
Query: 75 tctagatatattcacttttatgcatttcttcgacaagtatttcc 118
| |||||| || || || ||| ||||| | ||||||||| ||||
Sbjct: 64 tatagatacatccatttctattcatttttgcgacaagtaattcc 107
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 85.7 bits (43), Expect = 2e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 54 tgtatctagatgtattttagttctagatatattcacttttatgcatttcttcgacaagta 113
||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||
Sbjct: 43 tgtatctagatgtattttagttctagatacattcatttttatccattttgatgacaagta 102
Query: 114 tttccagacagagggagta 132
||| | |||||||||||||
Sbjct: 103 ttttcggacagagggagta 121
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 83.8 bits (42), Expect = 6e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||||||||||| | ||| ||||||||| || |||| |||||||||||||||||||||||
Sbjct: 5 tactccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagtt 64
Query: 76 ctagatatat 85
|||||||||
Sbjct: 65 ttagatatat 74
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 81.8 bits (41), Expect = 2e-15
Identities = 102/121 (84%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||||||||||||||||| ||| || ||||||||||||||| ||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgtcctagagatgaatgtatctagacttattttagtt 61
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagtatga 135
|||||| || || | ||| ||||| | ||||||||||||| ||| ||||||||||||
Sbjct: 60 atagatacatcca-atatatccatttttaggacaagtatttccggacggagggagtatga 2
Query: 136 a 136
|
Sbjct: 1 a 1
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatact 38
||||||||||||||||||||||||
Sbjct: 4 atactccctccgtccggaaatact 27
>RF00906;MIR1122;BT009083.1/864-988 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 89/104 (85%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtatttt-agt 74
|||||||||| ||||||||||| ||||||| ||| ||||||||| | ||||||| |||
Sbjct: 121 tactccctccatccggaaatacctgtcggagaaatagatgtatctaaacgtatttttagt 62
Query: 75 tctagatatattcacttttatgcatttcttcgacaagtatttcc 118
|||||||| ||||| ||||| ||||||| ||||||||| ||||
Sbjct: 61 tctagatacattcatttttacccatttctacgacaagtaattcc 18
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 94/112 (83%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||||||| | ||||||| |||| | ||||| ||||||||||||| |||||||||
Sbjct: 121 tactccctccgtcagaaaatacttgtcgaaagaatggatgtatctagatgcattttagtt 62
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagg 127
||| ||| ||||| || ||| ||||| | ||| ||||| |||| ||| ||||
Sbjct: 61 ctaaatacattcatttctatccatttttgcgataagtaattccggacggagg 10
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 79.8 bits (40), Expect = 9e-15
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 14 tatactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttag 73
|||||||||||||||||||| || | ||| || |||| ||||||||||| |||||||||
Sbjct: 123 tatactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttag 64
Query: 74 ttctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagtat 133
||||||||| || || || | | ||||| ||||||||| |||| ||| ||||||||||
Sbjct: 63 ttctagatacatccatttctttccattttgacgacaagtacttccggacggagggagtat 4
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 77.8 bits (39), Expect = 4e-14
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||||| ||||| |||| |||| |||| || ||||||||||||||||||||||||||||
Sbjct: 111 tactccatccgtttggaattacttgtcgcagaaatgaatgtatctagatgtattttagtt 52
Query: 76 ctagata 82
|||||||
Sbjct: 51 ctagata 45
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 87/103 (84%)
Strand = Plus / Minus
Query: 32 aaatactcgtcggaggaatgaatgtatctagatgtattttagttctagatatattcactt 91
||||||| ||| ||||||| ||||||||||||||||| || ||||||||| || || ||
Sbjct: 105 aaatacttgtcataggaatgtatgtatctagatgtattataattctagatacatccattt 46
Query: 92 ttatgcatttcttcgacaagtatttccagacagagggagtatg 134
|||| ||||| | |||||||| |||| ||| |||||||||||
Sbjct: 45 ttatacatttatgtgacaagtaattccggacggagggagtatg 3
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||||||||||| | ||| |||||||| || ||||||||||||||||||||||||| ||
Sbjct: 121 tactccctccgttcagaattactcgtccaagaaatgaatgtatctagatgtattttaatt 62
Query: 76 ctagatatattcacttttatgcattt 101
|||||| || || |||||| |||||
Sbjct: 61 gtagatacatccatttttatccattt 36
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 73.8 bits (37), Expect = 6e-13
Identities = 98/117 (83%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||||||||||||||||| || | | |||||| |||||||| ||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgttctaaggatgaatatatctagacttattttagtt 61
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagta 132
|||||| || || || ||| ||||||| ||||||||||||| ||| |||||||||
Sbjct: 60 atagatacatcca-ttatattcatttctgggacaagtatttccggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatact 38
|||||||||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatact 27
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 73.8 bits (37), Expect = 6e-13
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||| || || || |||||||| || ||||||||||||||||||||||||||||
Sbjct: 111 tactccctctgttcgaaattactcgtccaagaaatgaatgtatctagatgtattttagtt 52
Query: 76 ctagatatattcacttttatg 96
|||||| || || |||||||
Sbjct: 51 atagatacatccatttttatg 31
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 14 tatactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttag 73
|||||||| |||||||||||||||| |||| | ||||| |||||| |||| ||||||||
Sbjct: 3 tatactccttccgtccggaaatacttgtcgaaagaatggatgtatttagacatattttag 62
Query: 74 ttctagatatattcacttttatgcatttcttcgacaagtatttc 117
|| ||||| || || || ||| ||||| | |||||||||||||
Sbjct: 63 ttttagatgcatccatttatattcatttttgcgacaagtatttc 106
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 69.9 bits (35), Expect = 9e-12
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||||||||||| ||||| |||| ||| || |||| ||||||||||| |||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagtt 52
Query: 76 ctagata 82
|||||||
Sbjct: 51 ctagata 45
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 69.9 bits (35), Expect = 9e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||| |||| |||||||| |||| | |||| |||||||||||||||||| ||||
Sbjct: 5 tactccctctgtcccgaaatacttgtcgcggaaatggatgtatctagatgtatttcagtt 64
Query: 76 ctagata 82
|||||||
Sbjct: 65 ctagata 71
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 69.9 bits (35), Expect = 9e-12
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||||||||||| | ||| |||| |||| | | ||| |||||||||||||||||||||||
Sbjct: 111 tactccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagtt 52
Query: 76 ctagata 82
|||||||
Sbjct: 51 ctagata 45
>RF00906;MIR1122;AY485644.1/203741-203618 4568:Triticum monococcum
Length = 124
Score = 67.9 bits (34), Expect = 4e-11
Identities = 98/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagt 74
||||| |||||||| ||||||||| ||||||| |||| ||| ||||||| || ||||||
Sbjct: 4 atacttcctccgtctggaaatacttgtcggagaaatggatgcatctagacgtgctttagt 63
Query: 75 tctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagta 132
| || | | ||||| |||||| ||||| | | |||||||||||| ||| |||||||||
Sbjct: 64 tttatacacattcatttttatccattt-tcccacaagtatttccggacggagggagta 120
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 97 catttcttcgacaagtatttccagacagagggagtat 133
||||||| |||||||||||||||||| |||| |||||
Sbjct: 40 catttctccgacaagtatttccagacggaggaagtat 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatact 38
|||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatact 98
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 67.9 bits (34), Expect = 4e-11
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 48 aatgaatgtatctagatgtattttagttctagatatattcacttttatgcatttcttcga 107
||||||||||| |||| |||||||||||||| ||| || || |||||| | ||||| |||
Sbjct: 89 aatgaatgtatttagacgtattttagttctacatacatccatttttatccgtttctccga 30
Query: 108 caagtatttccagacagagggagtat 133
|||||||| | ||| ||||||||||
Sbjct: 29 caagtattcctagaaggagggagtat 4
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 67.9 bits (34), Expect = 4e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 13 atatactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtatttta 72
||||||||||||||| ||||| |||| |||| |||| ||||||||||| ||||||||
Sbjct: 114 atatactccctccgttcggaattacttgtcgcgaaaatggatgtatctagacgtatttta 55
Query: 73 gttctagata 82
||||||||||
Sbjct: 54 gttctagata 45
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 67.9 bits (34), Expect = 4e-11
Identities = 98/118 (83%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||||||||||| |||||||||| ||| | |||||||||||||||| ||||||||||
Sbjct: 120 tactccctccgttcggaaatacttgtcctaaaaatgaatgtatctagacttattttagtt 61
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagtat 133
|||||| | || || ||| ||||||| |||||||||||| ||| ||||||||||
Sbjct: 60 atagataca-tctattatattcatttctaggacaagtatttctggacggagggagtat 4
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||||||||| ||||||| ||| | |||| || ||||||||||||||||||||
Sbjct: 111 tactccctccgtccgaaaatacttgtcattgaaatggatatatctagatgtattttagtt 52
Query: 76 ctaga 80
|||||
Sbjct: 51 ctaga 47
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 53 atgtatctagatgtattttagttctagata 82
||||||||||||||||||||||||||||||
Sbjct: 84 atgtatctagatgtattttagttctagata 55
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 14 tatactccctccgtccggaaatact 38
|||||||||||||||||||||||||
Sbjct: 133 tatactccctccgtccggaaatact 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaata 36
||||||||||||||||||||||
Sbjct: 4 atactccctccgtccggaaata 25
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 atgtatctagatgtattttagttctagata 82
||||||||||||||||||||||||||||||
Sbjct: 41 atgtatctagatgtattttagttctagata 70
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 53 atgtatctagatgtattttagttctagata 82
||||||||||||||||||||||||||||||
Sbjct: 84 atgtatctagatgtattttagttctagata 55
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatact 38
|||||||||||||||||||||||
Sbjct: 132 tactccctccgtccggaaatact 110
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 60.0 bits (30), Expect = 9e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||| ||| ||| |||| ||||| ||| ||| |||| ||||||||||| |||||||| ||
Sbjct: 5 tactgcctacgttcggatatacttgtcagagaaatggatgtatctagacgtattttactt 64
Query: 76 ctagatatattcacttttatgcattt 101
||||||| || || |||||| |||||
Sbjct: 65 ctagatacatccatttttatccattt 90
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 58.0 bits (29), Expect = 3e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||||||||||| ||| || |||||| || ||| |||||||||| ||||||||||||
Sbjct: 5 tactccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagtt 64
Query: 76 ctagatatattca 88
||||||| |||||
Sbjct: 65 ctagatacattca 77
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 53 atgtatctagatgtattttagttctagatatat 85
|||||| ||||||||||||||||||||||||||
Sbjct: 51 atgtatttagatgtattttagttctagatatat 83
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 53 atgtatctagatgtattttagttctagatatattcacttttatgcattt 101
|||||||||||||||||||| ||||||||| |||| |||||| |||||
Sbjct: 84 atgtatctagatgtattttaattctagatacattcttttttatccattt 36
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 49 atgaatgtatctagatgtattttagttctagatatattca 88
|||||| ||| || ||||||||||||||||||||||||||
Sbjct: 38 atgaatatatataaatgtattttagttctagatatattca 77
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 49 atgaatgtatctagatgtattttagttctagatatattca 88
|||||||||||||||| ||||||| ||||||||| |||||
Sbjct: 78 atgaatgtatctagatttattttaattctagatacattca 39
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 19 tccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagttcta 78
||||||||| | ||| |||||||| | |||| ||||||||||||||||||||||| ||
Sbjct: 8 tccctccgttccgaattactcgtccaataaatggatgtatctagatgtattttagttata 67
Query: 79 gata 82
||||
Sbjct: 68 gata 71
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 98/120 (81%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 13 atatactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtatttta 72
|||||||||| ||||||||||||||| ||| | ||||||||||||| || |||||||
Sbjct: 123 atatactccccccgtccggaaatacttgtcctaaagatgaatgtatctaaatttatttta 64
Query: 73 gttctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagta 132
||| | |||| || || || ||| ||||||| ||||| ||||| | || ||||||||||
Sbjct: 63 gttatggatacatcca-ttatatccatttctaggacaaatattttcggatagagggagta 5
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
|||||||||||| | ||| |||| |||| | |||| ||||||||||| ||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtcgaaaaaatggatgtatctagacatattttagtt 52
Query: 76 ctagata 82
|||||||
Sbjct: 51 ctagata 45
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 53 atgtatctagatgtattttagttctagata 82
||||||| ||||||||||||||||||||||
Sbjct: 74 atgtatcaagatgtattttagttctagata 45
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atgtatctagatgtattttagttcta 78
||||||||||||||||||||||||||
Sbjct: 63 atgtatctagatgtattttagttcta 88
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 53 atgtatctagatgtattttagttcta 78
||||||||||||||||||||||||||
Sbjct: 84 atgtatctagatgtattttagttcta 59
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatact 38
|||||||||||||||||||||||
Sbjct: 131 tactccctccgtccggaaatact 109
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 51 gaatgtatctagatgtattttagttctag 79
|||||||| ||||||||||||||||||||
Sbjct: 86 gaatgtatatagatgtattttagttctag 58
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 atgtatctagatgtattttagttctagatatat 85
|||||||||||||||| |||||| |||||||||
Sbjct: 52 atgtatctagatgtatattagttttagatatat 84
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 51 gaatgtatctagatgtattttagttctag 79
|||||||||||||| ||||||||||||||
Sbjct: 86 gaatgtatctagatatattttagttctag 58
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 atatactccctccgtccggaaatact 38
|||||||||||||||||| |||||||
Sbjct: 134 atatactccctccgtccgaaaatact 109
>RF00906;MIR1122;EU835980.1/752-629 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 50.1 bits (25), Expect = 8e-06
Identities = 95/117 (81%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagtt 75
||||||||||||| | ||||||| | | || |||| ||||| |||| ||||||||||
Sbjct: 120 tactccctccgtctgaaaatacttgccctagaaatggttgtatgtagacttattttagtt 61
Query: 76 ctagatatattcacttttatgcatttcttcgacaagtatttccagacagagggagta 132
|||||| || || |||||| ||||||| ||||||||||| | ||| |||||||||
Sbjct: 60 atagatacat-caattttattcatttctaggacaagtatttgcggacggagggagta 5
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 50.1 bits (25), Expect = 8e-06
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagt 74
|||||||| |||||||||||||| ||| | |||||||||||||||| |||||||||
Sbjct: 120 atactccccccgtccggaaatacctgtcttcgaaatgaatgtatctagacttattttagt 61
Query: 75 t 75
|
Sbjct: 60 t 60
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 19 tccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagttcta 78
||||||||| ||||| |||| |||| || |||| ||||||||||| | ||| |||||||
Sbjct: 8 tccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttcta 67
Query: 79 gata 82
||||
Sbjct: 68 gata 71
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 29 cggaaatactcgtcggaggaatgaatgtatctagatgtattttagttctagatatattca 88
||||| |||| |||| || |||| ||||||||||| | ||||||||||||||| |||||
Sbjct: 26 cggaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacattca 85
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatact 38
||||||||||||||||||||||||
Sbjct: 4 atactccctccgtccggaaatact 27
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 atgtatctagatgtattttagttctagata 82
||||||||||| |||||||||||||||||
Sbjct: 52 atgtatctagacatattttagttctagata 81
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 67/80 (83%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 53 atgtatctagatgtattttagttctagatatattcacttttatgcatttcttcgacaagt 112
||||||||||| ||||||| || |||||| || || |||||| ||||| | |||||||
Sbjct: 42 atgtatctagacttattttacttatagatacatcca-ttttatacatttttatgacaagt 100
Query: 113 atttccagacagagggagta 132
|||||| ||| |||||||||
Sbjct: 101 atttccggacggagggagta 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatact 38
|||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatact 98
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatactcgtcggaggaatgaatgtatctagatgtattttagt 74
||||| ||||||| |||||||||| || || |||||||||||||||| ||||||| |
Sbjct: 4 atactacctccgttcggaaatacttgttttagagatgaatgtatctagatttattttaat 63
Query: 75 tctagata 82
| ||||||
Sbjct: 64 tatagata 71
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 56 tatctagatgtattttagttcta 78
|||||||||||||||||||||||
Sbjct: 71 tatctagatgtattttagttcta 49
>RF00906;MIR1122;AY951949.1/1544-1411 4568:Triticum monococcum
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 52 aatgtatctagatgtattttagttctagatatatt 86
|||||||||| ||||||||||||| || |||||||
Sbjct: 84 aatgtatctaaatgtattttagttttaaatatatt 50
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 aatatactccctccgtccggaaatact 38
||||||||||||||||||| |||||||
Sbjct: 135 aatatactccctccgtccgaaaatact 109
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatact 38
|||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatact 98
>RF00906;MIR1122;AK250831.1/1328-1188 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatact 38
|||||||||||||||||||||||
Sbjct: 137 tactccctccgtccggaaatact 115
>RF00906;MIR1122;AK249975.1/2279-2156 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 atatactccctccgtccggaaatact 38
||||||||||||| ||||||||||||
Sbjct: 2 atatactccctccatccggaaatact 27
