miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF104384.1/242-122 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 121
Score = 89.7 bits (45), Expect = 8e-18
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 58 ttggtgctagatacatccatttgagggacaagttttttcggacggagggagta 110
||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 53 ttggtgctagatacatccattggagggacaagctttttcggacggagggagta 1
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaaagcttgtcccaagctt 50
|||||||||||||||||||| ||||||||||||||
Sbjct: 118 tactccctccgtccggaaaaacttgtcccaagctt 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 82 gggacaagttttttcggacggagggagtag 111
||||||||||||| ||||||||||||||||
Sbjct: 90 gggacaagtttttccggacggagggagtag 119
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaaagcttgtccc 44
||||||||||||||| |||||||||||||
Sbjct: 1 tactccctccgtccgaaaaagcttgtccc 29
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 agttggtgctagatacatccatttgag 82
|||| ||||||||||||||||||||||
Sbjct: 53 agttagtgctagatacatccatttgag 79
>RF00906;MIR1122;AY951945.1/96570-96695 4568:Triticum monococcum
Length = 126
Score = 83.8 bits (42), Expect = 5e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 58 ttggtgctagatacatccatttgagggacaagttttttcggacggagggagtag 111
|||||||||||||||||||||||||||||| | |||||||||||||||| ||||
Sbjct: 70 ttggtgctagatacatccatttgagggacagggtttttcggacggagggggtag 123
>RF00906;MIR1122;EU660894.1/7285-7161 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 125
Score = 73.8 bits (37), Expect = 5e-13
Identities = 50/53 (94%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 58 ttggtgctagatacatccatttgagggacaagttttttcggacggagggagta 110
|||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 56 ttggtgctagatacatccatttgagggacaag-cttttcggacagagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 56 agttggtgctagatacatccatttgagggacaag 89
|||| ||||||||||||||||||| |||||||||
Sbjct: 56 agttagtgctagatacatccatttaagggacaag 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaaagcttgtcccaagcttgt 52
||||| |||| ||| | |||||||||||||||||||||
Sbjct: 122 atacttcctctgtctgaaaaagcttgtcccaagcttgt 85
>RF00906;MIR1122;AF446141.1/33072-33186 37682:Aegilops tauschii
Length = 115
Score = 73.8 bits (37), Expect = 5e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 58 ttggtgctagatacatccatttgagggacaagttttttcggacggagggagta 110
||||||||||| ||||||||||| ||| ||||||||||||||| |||||||||
Sbjct: 59 ttggtgctagacacatccatttgtggggcaagttttttcggactgagggagta 111
>RF00906;MIR1122;AM932682.1/92777-92652 4565:Triticum aestivum
(bread wheat)
Length = 126
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 62 tgctagatacatccatttgagggacaagttttttcggacgg 102
||||||||||||||||||||||||| || ||||||||||||
Sbjct: 53 tgctagatacatccatttgagggacgagctttttcggacgg 13
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gacaagttttttcggacggagggagta 110
||||||||||||| |||||||||||||
Sbjct: 96 gacaagttttttccgacggagggagta 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 56 agttggtgctagatacatccatttgagggacaag 89
|||| |||||| ||||||||||||||| ||||||
Sbjct: 57 agttagtgctaaatacatccatttgagagacaag 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaaagcttgtcccaagcttgt 52
|||||||||||||| | |||| |||||| |||||||||
Sbjct: 123 atactccctccgtcggaaaaaacttgtcacaagcttgt 86
>RF00906;MIR1122;AF446141.1/45135-45243 37682:Aegilops tauschii
Length = 109
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 62 tgctagatacatccatttgagggacaagttttttcggacggagggagta 110
||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct: 53 tgctagatacatccatttgagggtcaaacttttagggacggagggagta 5
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 64 ctagatacatccatttgagggacaagttttttcggacggagggagtag 111
||||||| |||||||| | ||||||| ||||||||||||||||||||
Sbjct: 65 ctagatatatccatttcaatgacaagtattttcggacggagggagtag 112
>RF00906;MIR1122;AY146588.1/242790-242666 4568:Triticum monococcum
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 62 tgctagatacatccatttgagggacaagttttttcggacggaggga 107
||||||||||||| ||||||||||||| ||||| |||| ||||||
Sbjct: 52 tgctagatacatctatttgagggacaaacttttttggacagaggga 7
>RF00906;MIR1122;AF525764.1/4346-4235 200361:Aegilops tauschii
subsp. strangulata
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 81 agggacaagttttttcggacggagggagta 110
||||||||| ||||||||||||||||||||
Sbjct: 79 agggacaagatttttcggacggagggagta 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 57 gttggtgctagatacatccatttgagggacaagtt 91
||||||||||||||| |||||||||| |||||||
Sbjct: 44 gttggtgctagatacgtccatttgagaaacaagtt 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaaagcttgtcccaagcttgtt 53
|||||||||||||||| |||| |||||||| | ||||||
Sbjct: 109 atactccctccgtccgaaaaatcttgtccctaacttgtt 71
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 83 ggacaagttttttcggacggagggagta 110
|||||||| |||||||||||||||||||
Sbjct: 95 ggacaagtattttcggacggagggagta 122
>RF00906;MIR1122;FJ427399.1/11963-11864 4571:Triticum turgidum
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 gacaagttttttcggacggagggagta 110
||||||| |||||||||||||||||||
Sbjct: 31 gacaagtattttcggacggagggagta 5
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 gacaagttttttcggacggagggagta 110
||||||| |||||||||||||||||||
Sbjct: 31 gacaagtattttcggacggagggagta 5
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 taaatactccctccgtccggaaa 34
|||||||||||||||||||||||
Sbjct: 1 taaatactccctccgtccggaaa 23
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gacaagttttttcggacggagggagta 110
||||||| |||||||||||||||||||
Sbjct: 104 gacaagtattttcggacggagggagta 130
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gacaagttttttcggacggagggagta 110
||||||| |||||||||||||||||||
Sbjct: 116 gacaagtattttcggacggagggagta 142
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gacaagttttttcggacggagggagta 110
||||||| |||||||||||||||||||
Sbjct: 105 gacaagtattttcggacggagggagta 131
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gacaagttttttcggacggagggagta 110
||||||| |||||||||||||||||||
Sbjct: 105 gacaagtattttcggacggagggagta 131
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 gacaagttttttcggacggagggagta 110
||||||| |||||||||||||||||||
Sbjct: 31 gacaagtattttcggacggagggagta 5
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gacaagttttttcggacggagggagta 110
||||||| |||||||||||||||||||
Sbjct: 105 gacaagtattttcggacggagggagta 131
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 64 ctagatacatccatttgagggacaagttttttcggacggagggagtagaa 113
|||||||||||||||| || ||| ||| ||| | |||||||||||||||
Sbjct: 64 ctagatacatccatttcagcgacgagtaatttggaacggagggagtagaa 113
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 acaagttttttcggacggagggagta 110
||||||||||| ||||||||||||||
Sbjct: 75 acaagttttttgggacggagggagta 100
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 64 ctagatacatccatttgagggacaagttttttcggacggagggagtagaa 113
|||||||||| ||||| |||||||| ||| || |||||||||||||||
Sbjct: 74 ctagatacattcatttttaggacaagtatttccgaacggagggagtagaa 123
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 taaatactccctccgtccggaa 33
||||||||||||||||||||||
Sbjct: 1 taaatactccctccgtccggaa 22
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaaagcttgtccca 45
||||||||||||||||||| |||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtccca 34
