miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 159 bits (80), Expect = 1e-38
Identities = 120/132 (90%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 13 acatactccctccgtccggaaatacttgtcatcgaaatggataaaagag-atgtatttag 71
||||||||||||||||||||||||||||||||| ||||||||||||| | |||||| |||
Sbjct: 2 acatactccctccgtccggaaatacttgtcatcaaaatggataaaaggggatgtatctag 61
Query: 72 acgtattttagttttagatacatctcttttgatccattttgatgacaagtattttaggac 131
|| |||||||||| |||||||||||||||| | || |||||||||||||||||| ||||
Sbjct: 62 acatattttagttctagatacatctctttttagtcactttgatgacaagtattttcggac 121
Query: 132 ggagggcgtatg 143
|||||| |||||
Sbjct: 122 ggagggagtatg 133
Score = 89.7 bits (45), Expect = 1e-17
Identities = 112/133 (84%), Gaps = 1/133 (0%)
Strand = Plus / Minus
Query: 12 aacatactccctccgtccggaaatacttgtcatcgaaatggataaaa-gagatgtattta 70
||||||||||||||||||| |||||||||||||| || || ||||| ||||||||| ||
Sbjct: 135 aacatactccctccgtccgaaaatacttgtcatcaaagtgactaaaaagagatgtatcta 76
Query: 71 gacgtattttagttttagatacatctcttttgatccattttgatgacaagtattttagga 130
|| || || | |||||||||| | ||| ||||||||||||||||||||||| |||
Sbjct: 75 gaactaaaatatgtctagatacatccccttttatccattttgatgacaagtatttccgga 16
Query: 131 cggagggcgtatg 143
||||||| |||||
Sbjct: 15 cggagggagtatg 3
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 141 bits (71), Expect = 3e-33
Identities = 111/123 (90%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaagag-atgtatttagacg 74
|||||||||||||||||||||||||||||| ||||| ||||||| | |||||| |||| |
Sbjct: 131 tactccctccgtccggaaatacttgtcatcaaaatgaataaaaggggatgtatctagatg 72
Query: 75 tattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgga 134
|||||||||| || ||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 71 tattttagttctaaatacatccctttttgtccattttgatgacaagtattttcggacgga 12
Query: 135 ggg 137
|||
Sbjct: 11 ggg 9
Score = 85.7 bits (43), Expect = 2e-16
Identities = 104/123 (84%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatgga-taaaagagatgtatttagacg 74
||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtcatcaaaatggacaaaaagggatgtatttagaac 64
Query: 75 tattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgga 134
|| || | |||||||||| | ||| || |||||||||||||||||||| |||||||
Sbjct: 65 taaaatacatctagatacatccccttttattcattttgatgacaagtatttccggacgga 124
Query: 135 ggg 137
|||
Sbjct: 125 ggg 127
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 137 bits (69), Expect = 5e-32
Identities = 111/124 (89%), Gaps = 2/124 (1%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaagag--atgtatttagac 73
|||||||||||||||||||||||||||| | ||||||||||||| | |||||| ||||
Sbjct: 132 tactccctccgtccggaaatacttgtcaccaaaatggataaaagggggatgtatctagat 73
Query: 74 gtattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgg 133
||||||||||| ||||||||| |||| | |||||||||||||||||||||||| | ||||
Sbjct: 72 gtattttagttctagatacatttcttattatccattttgatgacaagtattttcgaacgg 13
Query: 134 aggg 137
||||
Sbjct: 12 aggg 9
Score = 63.9 bits (32), Expect = 6e-10
Identities = 103/124 (83%), Gaps = 2/124 (1%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataa-aagagatgtatttagacg 74
|||||||||||| || |||||||||||||| |||||||||| |||| |||||| ||||
Sbjct: 5 tactccctccgttcgaaaatacttgtcatcaaaatggataataagaaatgtatctagaac 64
Query: 75 tattttagttttagatacat-ctcttttgatccattttgatgacaagtattttaggacgg 133
|| || | ||||||||| | | ||| |||||||||| |||||||||||| ||||||
Sbjct: 65 taaaatacatctagatacatcccccttttatccattttggtgacaagtatttccggacgg 124
Query: 134 aggg 137
||||
Sbjct: 125 aggg 128
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 131 bits (66), Expect = 3e-30
Identities = 106/118 (89%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 21 cctccgtccggaaatacttgtcatcgaaatggataaaa-gagatgtatttagacgtattt 79
||||||||||||||||||||||||| |||| |||||| | |||||||||||| ||||||
Sbjct: 9 cctccgtccggaaatacttgtcatcaaaataaataaaacgggatgtatttagatgtattt 68
Query: 80 tagttttagatacatctcttttgatccattttgatgacaagtattttaggacggaggg 137
||||| |||||| ||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct: 69 tagttctagatatatctctttttgttcattttgatgacaagtattttcggacggaggg 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatg 51
||||||||||||||| |||||||||||||| |||||
Sbjct: 130 tactccctccgtccgaaaatacttgtcatcaaaatg 95
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 127 bits (64), Expect = 5e-29
Identities = 113/128 (88%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaag-agatgtatttagacg 74
|||| ||||||||||||||||||||||||| |||| ||||||| |||||||| |||| |
Sbjct: 5 tacttcctccgtccggaaatacttgtcatcaaaataaataaaaggagatgtatctagatg 64
Query: 75 tattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgga 134
||| ||||||||||||| ||| |||| ||||||||||||||||| |||||| |||||||
Sbjct: 65 tatattagttttagatatatccttttttatccattttgatgacaattatttttggacgga 124
Query: 135 gggcgtat 142
||| ||||
Sbjct: 125 gggagtat 132
Score = 61.9 bits (31), Expect = 2e-09
Identities = 101/123 (82%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaaga-gatgtatttagac 73
||||||||||||||| ||||| |||||||| |||||||||||| | ||| ||| || |
Sbjct: 132 atactccctccgtccaaaaataattgtcatcaaaatggataaaaaaggatatatctaaaa 73
Query: 74 gtattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgg 133
|| | || | |||||||||||| ||| || ||||||||||||||||||| ||||||
Sbjct: 72 ctaatatacatctagatacatctccttttatttattttgatgacaagtatttccggacgg 13
Query: 134 agg 136
|||
Sbjct: 12 agg 10
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 123 bits (62), Expect = 7e-28
Identities = 105/118 (88%), Gaps = 1/118 (0%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaaga-gatgtatttagacg 74
||||| |||||||| ||||||||||||||| |||||||||||||| ||||||| |||| |
Sbjct: 131 tactctctccgtccagaaatacttgtcatcaaaatggataaaagaagatgtatctagatg 72
Query: 75 tattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacg 132
||||||| || ||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct: 71 tattttaattctagatacattcttttttatccattttgatgacaagtattttcggacg 14
Score = 73.8 bits (37), Expect = 6e-13
Identities = 101/121 (83%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaagaga-tgtatttagacg 74
||||| || |||||| |||||||||||||| |||||||||||| ||| ||||| ||||
Sbjct: 5 tactcgcttcgtccgaaaatacttgtcatcaaaatggataaaaaagaatgtatctagaat 64
Query: 75 tattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgga 134
|| || | ||||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct: 65 taaaatacatctagatacatcttcttttatccattttgatgacaagtatttctggacgga 124
Query: 135 g 135
|
Sbjct: 125 g 125
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 121 bits (61), Expect = 3e-27
Identities = 113/129 (87%), Gaps = 1/129 (0%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaagag-atgtatttagac 73
||||||||||||||||||||||||||||||| | ||| ||||||| | |||||| ||||
Sbjct: 132 atactccctccgtccggaaatacttgtcatcaagatgaataaaaggggatgtatctagat 73
Query: 74 gtattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgg 133
||||||||||| |||||||| | ||||| ||||||| ||||||||| ||||| ||||||
Sbjct: 72 gtattttagttctagatacaccactttttatccattctgatgacaaatatttccggacgg 13
Query: 134 agggcgtat 142
|||| ||||
Sbjct: 12 agggagtat 4
Score = 65.9 bits (33), Expect = 2e-10
Identities = 106/129 (82%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggat-aaaagagatgtatttagac 73
|||||||||||||||||||||| |||||||| ||||||| ||||| | ||||| ||||
Sbjct: 4 atactccctccgtccggaaatatttgtcatcagaatggataaaaagtggtgtatctagaa 63
Query: 74 gtattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgg 133
|| || | |||||||||| | ||| || ||| |||||||||||||||| ||||||
Sbjct: 64 ctaaaatacatctagatacatccccttttattcatcttgatgacaagtatttccggacgg 123
Query: 134 agggcgtat 142
|||| ||||
Sbjct: 124 agggagtat 132
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 121 bits (61), Expect = 3e-27
Identities = 113/129 (87%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaagag-atgtatttagac 73
||||||||| |||||| |||||||||||||| |||| ||| ||||| ||||||||| ||
Sbjct: 4 atactcccttcgtccgaaaatacttgtcatcaaaataaatataagaggatgtatttaaac 63
Query: 74 gtattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgg 133
|||||||||| || |||||| | |||| |||||||||||||||||||||||| ||||||
Sbjct: 64 atattttagttctaaatacatttatttttatccattttgatgacaagtattttcggacgg 123
Query: 134 agggcgtat 142
|||| ||||
Sbjct: 124 agggagtat 132
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaa 58
|||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 132 atactccctccgtccgaaaatacttgtcatcaaaatggataaaa 89
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 117 bits (59), Expect = 5e-26
Identities = 105/119 (88%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaagaga-tgtatttagac 73
|||||||||||||||| |||||||||||||| || | |||||| ||| ||||| ||||
Sbjct: 132 atactccctccgtccgaaaatacttgtcatcaaagtaaataaaaaagaatgtatctagat 73
Query: 74 gtattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacg 132
|||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 72 atattttagttctaggtacatctctttttatccattttgatgacaagtattttcggacg 14
Score = 54.0 bits (27), Expect = 6e-07
Identities = 40/43 (93%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 25 cgtccggaaatacttgtcatcgaaatggat-aaaagagatgta 66
|||||| |||||||||||||| |||||||| ||||||||||||
Sbjct: 14 cgtccgaaaatacttgtcatcaaaatggataaaaagagatgta 56
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 107 bits (54), Expect = 4e-23
Identities = 94/106 (88%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 28 ccggaaatacttgtcatcgaaatggataaaagaga-tgtatttagacgtattttagtttt 86
|||||||||||||||||| ||||| ||||||| || ||||| |||| ||||||||||| |
Sbjct: 119 ccggaaatacttgtcatcaaaatgaataaaagggaatgtatatagatgtattttagttct 60
Query: 87 agatacatctcttttgatccattttgatgacaagtattttaggacg 132
|| |||||| |||| |||||||||||||||||||||||| |||||
Sbjct: 59 aggtacatcattttttatccattttgatgacaagtattttcggacg 14
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 25 cgtccggaaatacttgtcatcgaaatggataaaa 58
|||||| |||||||||||||| ||||||||||||
Sbjct: 14 cgtccgaaaatacttgtcatcaaaatggataaaa 47
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 83.8 bits (42), Expect = 6e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacatctcttttgatccattttgatgacaag 120
||||||| |||| ||||||||||| || ||||||||||||| | ||| |||||||||||
Sbjct: 62 gatgtatctagatgtattttagttctacatacatctctttttgttcatattgatgacaag 121
Query: 121 tattttaggacggagggcgtat 142
|||||| |||||||||| ||||
Sbjct: 122 tattttcggacggagggagtat 143
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtcatc 45
|||||||||||||||| ||||||||||||||
Sbjct: 143 atactccctccgtccgaaaatacttgtcatc 113
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 63 tgtatttagacgtattttagttttagatacatctcttttgatccattttgatgacaagta 122
||||| |||| ||||||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct: 43 tgtatctagatgtattttagttctagatacattcatttttatccattttgatgacaagta 102
Query: 123 ttttaggacggaggg 137
|||| |||| |||||
Sbjct: 103 ttttcggacagaggg 117
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaa 58
||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 121 tactccctctgtccgaaaatacttgtcatcaaaatggataaaa 79
>RF00906;MIR1122;FJ427399.1/11963-11864 4571:Triticum turgidum
Length = 100
Score = 73.8 bits (37), Expect = 6e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaaga 60
||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtcatcaaaatggataaaaga 49
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaag 59
|||| |||||||||| |||||||||||||| |||||||||||||
Sbjct: 96 tacttcctccgtccgaaaatacttgtcatcaaaatggataaaag 53
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 103 atccattttgatgacaagtattttaggacggaggg 137
|||||||||||||||||||||||| ||||||||||
Sbjct: 43 atccattttgatgacaagtattttcggacggaggg 9
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 103 atccattttgatgacaagtattttaggacggagg 136
|||||||||||||||||||||||| |||||||||
Sbjct: 58 atccattttgatgacaagtattttcggacggagg 91
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 104/128 (81%), Gaps = 9/128 (7%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaagagatgtatttagacg 74
||||||||||||||||||| || ||||||| ||||||||| |||| ||||||
Sbjct: 122 atactccctccgtccggaattatttgtcatagaaatggat---------gtatctagacg 72
Query: 75 tattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgga 134
|||||||||| |||||||||| ||| |||||||||| |||||||| || |||||||
Sbjct: 71 tattttagttctagatacatccatttctttccattttgacgacaagtacttccggacgga 12
Query: 135 gggcgtat 142
||| ||||
Sbjct: 11 gggagtat 4
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatgga 53
||||||||||||||||||| |||||||| || |||||||
Sbjct: 4 atactccctccgtccggaagtacttgtcgtcaaaatgga 42
>RF00906;MIR1122;AY951949.1/1544-1411 4568:Triticum monococcum
Length = 134
Score = 67.9 bits (34), Expect = 4e-11
Identities = 102/122 (83%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaa-agagatgtatttagac 73
|||||||||| |||| |||||||||||||| |||| ||||| | | |||||| || |
Sbjct: 131 atactccctctatccgaaaatacttgtcatcaaaataaataaataaaaatgtatctaaat 72
Query: 74 gtattttagttttagatacatctcttttgatccattttgatgacaagtattttaggacgg 133
|||||||||||||| ||| || | ||||| || ||||| |||||||||||||| ||||||
Sbjct: 71 gtattttagttttaaatatattttttttgttc-attttaatgacaagtattttcggacgg 13
Query: 134 ag 135
||
Sbjct: 12 ag 11
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 67.9 bits (34), Expect = 4e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacatctcttttgatccattttgatgacaag 120
||||||| |||| ||||||||||| |||||||||| |||| || ||||| | ||||||
Sbjct: 41 gatgtatctagatgtattttagttctagatacatccatttttatgcatttctacgacaag 100
Query: 121 tattttaggacggagggcgtat 142
|||||| |||||||||| ||||
Sbjct: 101 tattttgggacggagggagtat 122
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaa 58
||||||||||||||| ||||||||||| | |||||| ||||||
Sbjct: 122 atactccctccgtcccaaaatacttgtcgtagaaatgcataaaa 79
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 67.9 bits (34), Expect = 4e-11
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 61 gatgtatttagacgtattttagttttagatacatctcttttgatccattttgatgacaag 120
||||||| |||| ||||||||||| |||||||||| |||| || ||||| | ||||||
Sbjct: 85 gatgtatctagatgtattttagttctagatacatccatttttatgcatttctacgacaag 26
Query: 121 tattttaggacggagggcgtat 142
|||||| |||||||||| ||||
Sbjct: 25 tattttgggacggagggagtat 4
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaa 58
||||||||||||||| ||||||||||| | |||||| ||||||
Sbjct: 4 atactccctccgtcccaaaatacttgtcgtagaaatgcataaaa 47
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggata 55
||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 111 tactccctccgtccgaaaatacttgtcattgaaatggata 72
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggat 54
||||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 4 atactccctccgtccagaattacttgtcatcaaaatggat 43
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 103 atccattttgatgacaagtattttaggacggagggcgtat 142
|||||||||||||||||||| || |||||||||| ||||
Sbjct: 43 atccattttgatgacaagtaattctggacggagggagtat 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 103 atccattttgatgacaagtattttaggacggaggg 137
|||||||| |||||||||||||| ||||||||||
Sbjct: 73 atccatttcaatgacaagtattttcggacggaggg 107
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 63.9 bits (32), Expect = 6e-10
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaagagatgtat 67
||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 120 tactccctccgtccggaaatacttgtcataaaaatgtataaaatggatgtat 69
Score = 60.0 bits (30), Expect = 9e-09
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 60 agatgtatttagacgtattttagttttagatacatctcttttgatccattttgatgacaa 119
|||||||| ||||| ||||||| || |||||||||| |||| || |||||| |||||||
Sbjct: 40 agatgtatctagacttattttacttatagatacatccatttt-atacatttttatgacaa 98
Query: 120 gtattttaggacggaggg 137
|||||| ||||||||||
Sbjct: 99 gtatttccggacggaggg 116
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 60.0 bits (30), Expect = 9e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 69 tagacgtattttagttttagatacatctcttttgatccattttgatgacaagtattttag 128
|||||||||||||||| |||||||||| |||| || ||||| ||||||||||| ||
Sbjct: 77 tagacgtattttagttctagatacatccatttttatgcatttctccgacaagtatttcag 18
Query: 129 gacggagggcgtat 142
||||||||| ||||
Sbjct: 17 gacggagggagtat 4
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgtc 42
||||||||||||||| ||||||||||||
Sbjct: 4 atactccctccgtcctgaaatacttgtc 31
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 60.0 bits (30), Expect = 9e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 14 catactccctccgtccggaaatacttgtcatcgaaatggata 55
||||||||||||||||||||||||||||| | |||||||||
Sbjct: 3 catactccctccgtccggaaatacttgtcctaaaaatggata 44
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtc 42
|||||||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgtc 94
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 60.0 bits (30), Expect = 9e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 13 acatactccctccgtccggaaatacttgtcatcgaaatggataaaa 58
||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 124 acatactccctccgtccggaattacttgtcacacaaatggataaaa 79
Score = 54.0 bits (27), Expect = 6e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacatctcttttgatccattttgatgacaag 120
||||||| |||| ||||||||||| |||||| ||| |||| |||||||| |||||||
Sbjct: 41 gatgtatctagatgtattttagttctagatatatccatttttatccatttgtgtgacaag 100
Query: 121 tattttaggacggagggcgtatg 143
|| || |||||||||| |||||
Sbjct: 101 taattccggacggagggagtatg 123
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 60.0 bits (30), Expect = 9e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacatctcttttgatccattt 110
||||||| |||||||||||||||| |||||||||| |||| ||||||||
Sbjct: 41 gatgtatctagacgtattttagttctagatacatccatttttatccattt 90
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaa 58
||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 122 atactccctccgtccggaactacttgttgcagaaatggataaaa 79
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 61 gatgtatttagacgtattttagttttagatacatctctttt 101
||||||| |||||||||||||||| ||||||||||| ||||
Sbjct: 75 gatgtatctagacgtattttagttctagatacatctatttt 35
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgtcatcgaaatggataaaagagatgtat 67
||||||||||||||| |||||||||||| | |||||| ||| || ||||||||
Sbjct: 4 atactccctccgtccagaaatacttgtcctagaaatgaatataatagatgtat 56
Score = 50.1 bits (25), Expect = 9e-06
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 62 atgtatttagacgtattttagttttagatacatctcttttgatccattttgatgacaagt 121
|||||| ||||| |||||||||| ||||||||||| || | || ||||| | |||||||
Sbjct: 83 atgtatctagacttattttagttatagatacatctattat-attcatttctaggacaagt 25
Query: 122 attttaggacggagggcgtat 142
|||| |||||||||| ||||
Sbjct: 24 atttctggacggagggagtat 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtc 42
|||||||||||| ||||||||||||||
Sbjct: 120 tactccctccgttcggaaatacttgtc 94
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggata 55
||||||||||||||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtcgcagaaatggata 44
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtc 42
||||||||||||||| |||||||||||
Sbjct: 122 tactccctccgtccgaaaatacttgtc 96
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtc 42
||||||||||||||||||||||||||||
Sbjct: 122 atactccctccgtccggaaatacttgtc 95
>RF00906;MIR1122;EU835980.1/752-629 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggataaaagagatgtat 67
||||||||||||||| ||||||||||| | |||||| |||||| |||||||
Sbjct: 5 tactccctccgtccgcaaatacttgtcctagaaatgaataaaattgatgtat 56
Score = 46.1 bits (23), Expect = 1e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 63 tgtatttagacgtattttagttttagatacatctcttttgatccattttgatgacaagta 122
||||| ||||| |||||||||| |||||||||| |||| || ||||| | ||||||||
Sbjct: 82 tgtatgtagacttattttagttatagatacatcaatttt-attcatttctaggacaagta 24
Query: 123 ttttaggacggaggg 137
||| ||||||||||
Sbjct: 23 tttgcggacggaggg 9
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacatc 95
||||||||||||| |||||||||||||||| ||||
Sbjct: 41 gatgtatttagacatattttagttttagatgcatc 75
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgtc 42
||||||| ||||||||||||||||||||
Sbjct: 4 atactccttccgtccggaaatacttgtc 31
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 13 acatactccctccgtccggaaatacttgtcatcgaaatg 51
|||||||||| |||||||||||||| |||| ||||||||
Sbjct: 122 acatactccccccgtccggaaatacctgtcttcgaaatg 84
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 13 acatactccctccgtccggaaatacttgtca 43
||||||||||||||||||||| |||||||||
Sbjct: 2 acatactccctccgtccggaattacttgtca 32
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggat 54
||||||| ||||||||||||||||||||| | |||||||
Sbjct: 5 tactcccgccgtccggaaatacttgtcataggaatggat 43
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtc 42
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtc 31
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgt 95
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 54.0 bits (27), Expect = 6e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacatctcttttgatccatttt 111
||||||| ||||||||||||| || |||||||||| |||| |||||||||
Sbjct: 41 gatgtatctagacgtattttacttctagatacatccatttttatccatttt 91
>RF00906;MIR1122;AY485644.1/203741-203618 4568:Triticum monococcum
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgt 95
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 62 atgtatttagacgtattttagttttagatacatc 95
||||||||||||||||||||||| || |||||||
Sbjct: 84 atgtatttagacgtattttagttctacatacatc 51
>RF00906;MIR1122;AK250831.1/1328-1188 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 141
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgt 41
||||||||||||||||||||||||||
Sbjct: 137 tactccctccgtccggaaatacttgt 112
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatgga 53
|||||||||||||||||| ||||||||| | |||||||
Sbjct: 121 tactccctccgtccggaattacttgtcaccaaaatgga 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggat 54
|||||||||||||||||| |||||| ||| ||||||||
Sbjct: 5 tactccctccgtccggaattacttgacataaaaatggat 43
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttg 40
|||||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttg 96
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 catactccctccgtccggaaatacttgtc 42
|||||||||| ||||||||||||||||||
Sbjct: 3 catactcccttcgtccggaaatacttgtc 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacatc 95
||||||| |||| ||||||||||| ||||||||||
Sbjct: 41 gatgtatctagatgtattttagttatagatacatc 75
>RF00906;MIR1122;AK249975.1/2279-2156 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatacttgtc 42
||||||||||| ||||||||||||||||
Sbjct: 4 atactccctccatccggaaatacttgtc 31
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 atactccctccgtccggaaatacttgtc 42
|||||||| |||||||||||||||||||
Sbjct: 121 atactccccccgtccggaaatacttgtc 94
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacatc 95
||||||| |||| ||||||||||| ||||||||||
Sbjct: 41 gatgtatctagatgtattttagttatagatacatc 75
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtc 42
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtc 31
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacat 94
||||||| |||||||||||||||| || ||||||
Sbjct: 41 gatgtatctagacgtattttagttctaaatacat 74
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagatacatc 95
||||||| |||| ||||||||||| ||||||||||
Sbjct: 40 gatgtatctagatgtattttagttctagatacatc 74
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 gatgtatttagacgtattttagttttagata 91
||||||| |||| ||||||||||||||||||
Sbjct: 41 gatgtatctagatgtattttagttttagata 71
>RF00906;MIR1122;EF104384.1/242-122 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtc 42
||||||||||||||||||| |||||||
Sbjct: 118 tactccctccgtccggaaaaacttgtc 92
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 61 gatgtatttagacgtattttagttttagata 91
||||||| |||||||||||||||| ||||||
Sbjct: 75 gatgtatctagacgtattttagttctagata 45
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatacttgtc 42
|||| ||||||||||||||||||||||
Sbjct: 120 tactacctccgtccggaaatacttgtc 94
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatacttgtcatcgaaatggat 54
|||||||||||| ||||| |||||||||| ||||||||
Sbjct: 5 tactccctccgttcggaattacttgtcataaaaatggat 43
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 62 atgtatttagacgtattttagttttagatacatc 95
|||||| |||| ||||||||||| ||||||||||
Sbjct: 74 atgtatctagatgtattttagttatagatacatc 41
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 61 gatgtatttagacgtattttagttttagatacatc 95
||||||| |||| ||||||||||| ||||||||||
Sbjct: 75 gatgtatctagatgtattttagttctagatacatc 41
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 62 atgtatttagacgtattttagttttagatacatc 95
|||||| |||| ||||||||||| ||||||||||
Sbjct: 74 atgtatctagatgtattttagttctagatacatc 41
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 actccctccgtccggaaatacttgtc 42
||||||||||| ||||||||||||||
Sbjct: 1 actccctccgttcggaaatacttgtc 26
