miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 15 atactccctccgtctggaaatacttgtcatcaaaatgg 52
|||||||||||||| |||||||||||||||||||||||
Sbjct: 4 atactccctccgtccggaaatacttgtcatcaaaatgg 41
Score = 63.9 bits (32), Expect = 5e-10
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 53 gacatattttanttctanatacatctcttttatctatttttgatgacaantatttttgga 112
||||||||||| ||||| ||||||||||||| | ||||||||||| |||||| |||
Sbjct: 61 gacatattttagttctagatacatctctttttagtcactttgatgacaagtattttcgga 120
Query: 113 cggagggantat 124
|||||||| |||
Sbjct: 121 cggagggagtat 132
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 15 atactccctccgtctggaaatacttgtcatcaaa 48
|||||||||||||| | |||||||||||||||||
Sbjct: 132 atactccctccgtccgaaaatacttgtcatcaaa 99
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 12 aatatactccctccgtctggaaatacttgtcatcaaaatgg 52
||||||||||||||||| | |||||||||||||||||||||
Sbjct: 135 aatatactccctccgtccgaaaatacttgtcatcaaaatgg 95
Score = 60.0 bits (30), Expect = 7e-09
Identities = 64/74 (86%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 54 acatattttanttctanatacatctctttt-atctatttttgatgacaantatttttgga 112
|||||||||| ||||| |||||| | |||| ||| ||||| |||||||| |||||| |||
Sbjct: 62 acatattttagttctaaatacatttatttttatccatttt-gatgacaagtattttcgga 120
Query: 113 cggagggantatat 126
|||||||| |||||
Sbjct: 121 cggagggagtatat 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 15 atactccctccgtctggaaatacttgtcatcaaaat 50
||||||||| |||| | |||||||||||||||||||
Sbjct: 4 atactcccttcgtccgaaaatacttgtcatcaaaat 39
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatg 51
||||||||||||| ||||||||||||||||||||||
Sbjct: 131 tactccctccgtccggaaatacttgtcatcaaaatg 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatgg 52
||||||||||||| | |||||||||||||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtcatcaaaatgg 41
Score = 48.1 bits (24), Expect = 3e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 90 ttttgatgacaantatttttggacggaggga 120
|||||||||||| |||||| |||||||||||
Sbjct: 38 ttttgatgacaagtattttcggacggaggga 8
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 14 tatactccctccgtctggaaatacttgtcatcaa 47
||||||||||||||| ||||||||||||||||||
Sbjct: 133 tatactccctccgtccggaaatacttgtcatcaa 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 15 atactccctccgtctggaaatacttgtcatcaaaatgg 52
|||||||||||||| ||||||| ||||||||| |||||
Sbjct: 4 atactccctccgtccggaaatatttgtcatcagaatgg 41
>RF00906;MIR1122;FJ427399.1/11963-11864 4571:Triticum turgidum
Length = 100
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatgg 52
||||||||||||| | |||||||||||||||||||||
Sbjct: 5 tactccctccgtccgaaaatacttgtcatcaaaatgg 41
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatgg 52
|||| |||||||| | |||||||||||||||||||||
Sbjct: 96 tacttcctccgtccgaaaatacttgtcatcaaaatgg 60
Score = 48.1 bits (24), Expect = 3e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 90 ttttgatgacaantatttttggacggaggga 120
|||||||||||| |||||| |||||||||||
Sbjct: 38 ttttgatgacaagtattttcggacggaggga 8
Score = 44.1 bits (22), Expect = 4e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 90 ttttgatgacaantatttttggacggagg 118
|||||||||||| |||||| |||||||||
Sbjct: 63 ttttgatgacaagtattttcggacggagg 91
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 90 ttttgatgacaantatttttggacggagggantat 124
|||||||||||| |||||||||||||||||| |||
Sbjct: 98 ttttgatgacaattatttttggacggagggagtat 132
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaat 50
|||| |||||||| |||||||||||||||||||||
Sbjct: 5 tacttcctccgtccggaaatacttgtcatcaaaat 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 15 atactccctccgtctggaaatacttgtcatcaaaatgg 52
|||||||||||||| ||||| |||||||||||||||
Sbjct: 132 atactccctccgtccaaaaataattgtcatcaaaatgg 95
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatgg 52
||||||||||||| |||||||||||||| ||||||||
Sbjct: 132 tactccctccgtccggaaatacttgtcaccaaaatgg 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatgg 52
|||||||||||| | |||||||||||||||||||||
Sbjct: 5 tactccctccgttcgaaaatacttgtcatcaaaatgg 41
Score = 48.1 bits (24), Expect = 3e-05
Identities = 56/65 (86%), Gaps = 2/65 (3%)
Strand = Plus / Minus
Query: 57 tattttanttctanatacatctctt-ttatctatttttgatgacaantatttttggacgg 115
||||||| ||||| |||||| |||| ||||| ||||| |||||||| |||||| | ||||
Sbjct: 71 tattttagttctagatacatttcttattatccatttt-gatgacaagtattttcgaacgg 13
Query: 116 aggga 120
|||||
Sbjct: 12 aggga 8
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatg 51
||||||||||||| | ||||||||||||||||||||
Sbjct: 130 tactccctccgtccgaaaatacttgtcatcaaaatg 95
Score = 54.0 bits (27), Expect = 5e-07
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 57 tattttanttctanatacatctcttttatctatttttgatgacaantatttttggacgga 116
||||||| ||||| ||| ||||||||| | |||||||||||| |||||| |||||||
Sbjct: 64 tattttagttctagatatatctctttttgttcattttgatgacaagtattttcggacgga 123
Query: 117 ggga 120
||||
Sbjct: 124 ggga 127
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 21 cctccgtctggaaatacttgtcatcaaaat 50
|||||||| |||||||||||||||||||||
Sbjct: 9 cctccgtccggaaatacttgtcatcaaaat 38
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 56.0 bits (28), Expect = 1e-07
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 57 tattttanttctanatacatctcttttatctatttttgatgacaantatttttggacgga 116
||||||| ||||| ||||||||||||| | | |||||||||| |||||| |||||||
Sbjct: 76 tattttagttctacatacatctctttttgttcatattgatgacaagtattttcggacgga 135
Query: 117 gggantat 124
|||| |||
Sbjct: 136 gggagtat 143
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 15 atactccctccgtctggaaatacttgtcatcaa 47
|||||||||||||| | ||||||||||||||||
Sbjct: 143 atactccctccgtccgaaaatacttgtcatcaa 111
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 13 atatactccctccgtctggaaatacttgtcatcaaa 48
|||||||||||||||| | |||||||||||||||||
Sbjct: 134 atatactccctccgtccgaaaatacttgtcatcaaa 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 tttgatgacaantatttttggacggagggantatat 126
||||||||||| |||||| ||||||||||| |||||
Sbjct: 99 tttgatgacaagtattttcggacggagggagtatat 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 52/60 (86%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 56 atattttanttctanatacatctctttt-atctatttttgatgacaantatttttggacg 114
|||||||| ||||| |||||||||||| ||| ||||| |||||||| |||||| |||||
Sbjct: 72 atattttagttctaggtacatctctttttatccatttt-gatgacaagtattttcggacg 14
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatg 51
||||||||||||| ||||||||||||||| ||||||
Sbjct: 120 tactccctccgtccggaaatacttgtcataaaaatg 85
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 15 atactccctccgtctggaaatacttgtcatcaaaatgg 52
|||||||||||||| ||| ||||||||||||||||||
Sbjct: 4 atactccctccgtccagaattacttgtcatcaaaatgg 41
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 atatactccctccgtctggaaatacttgtc 42
|||||||||||||||| |||||||||||||
Sbjct: 124 atatactccctccgtccggaaatacttgtc 95
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 15 atactccctccgtctggaaatacttgtcatcaaaatgg 52
|||||||||||||| ||||||||||||| | |||||||
Sbjct: 4 atactccctccgtccggaaatacttgtcctaaaaatgg 41
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgtc 42
||||||||||||| |||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgtc 94
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 15 atactccctccgtctggaaatacttgtcatcaaaatgg 52
|||||||||||||| |||| |||||||| |||||||||
Sbjct: 4 atactccctccgtccggaagtacttgtcgtcaaaatgg 41
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatgg 52
||||||||| ||| | |||||||||||||||||||||
Sbjct: 121 tactccctctgtccgaaaatacttgtcatcaaaatgg 85
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatgg 52
||||||||||||| |||| ||||||||| ||||||||
Sbjct: 121 tactccctccgtccggaattacttgtcaccaaaatgg 85
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgtcatcaaaatgg 52
||||| ||||||| ||||||||||||||||||||||
Sbjct: 131 tactctctccgtccagaaatacttgtcatcaaaatgg 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 47/53 (88%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 66 tctanatacatct-cttttatctatttttgatgacaantatttttggacggag 117
|||| |||||||| |||||||| ||||| |||||||| ||||| |||||||||
Sbjct: 74 tctagatacatcttcttttatccatttt-gatgacaagtatttctggacggag 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Minus
Query: 57 tattttanttctanatacat-ctcttttatctatttttgatgacaantatttttggacg 114
||||||| ||||| |||||| || ||||||| ||||| |||||||| |||||| |||||
Sbjct: 71 tattttaattctagatacattcttttttatccatttt-gatgacaagtattttcggacg 14
>RF00906;MIR1122;AY485644.1/203741-203618 4568:Triticum monococcum
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 atactccctccgtctggaaatacttgtc 42
||||| ||||||||||||||||||||||
Sbjct: 4 atacttcctccgtctggaaatacttgtc 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgt 41
||||||||||||| ||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgt 95
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 atactccctccgtctggaaatacttgtc 42
|||||||||||||| |||||||||||||
Sbjct: 122 atactccctccgtccggaaatacttgtc 95
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgtctggaaatacttgtc 42
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtc 31
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgtctggaaatacttgtc 42
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtc 31
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgtctggaaatacttgtc 42
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgtc 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgt 41
||||||||||||| ||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgt 95
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 30 ggaaatacttgtcatcaaaatg 51
||||||||||||||||||||||
Sbjct: 117 ggaaatacttgtcatcaaaatg 96
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 atatactccctccgtctggaaatacttgtc 42
|||||||||||||||| | |||||||||||
Sbjct: 2 atatactccctccgtcagaaaatacttgtc 31
>RF00906;MIR1122;AK249975.1/2279-2156 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 atatactccctccgtctggaaatacttgtc 42
||||||||||||| || |||||||||||||
Sbjct: 2 atatactccctccatccggaaatacttgtc 31
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 atatactccctccgtctggaaatacttgtc 42
|||||||||| ||||| |||||||||||||
Sbjct: 123 atatactccccccgtccggaaatacttgtc 94
>RF00906;MIR1122;AK250831.1/1328-1188 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 141
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgtctggaaatacttgt 41
||||||||||||| ||||||||||||
Sbjct: 137 tactccctccgtccggaaatacttgt 112
