miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 70 gacaagaattatggaacggagggagtagc 98
|||||||||||||||||||||||||||||
Sbjct: 31 gacaagaattatggaacggagggagtagc 3
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||||||||||||||||||||
Sbjct: 97 gacaagaattatggaacggagggagta 123
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 65 accatgacaagaattatggaacggagggagta 96
|||| |||||||||||||||||||||||||||
Sbjct: 36 accacgacaagaattatggaacggagggagta 5
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 70 gacaagaattatggaacggagggagtag 97
||||||||||||||||||||||||||||
Sbjct: 31 gacaagaattatggaacggagggagtag 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 70 gacaagaattatggaacggagggagtag 97
||||||||||||||||||| ||||||||
Sbjct: 95 gacaagaattatggaacggcgggagtag 122
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||||||||||||||||||||
Sbjct: 95 gacaagaattatggaacggagggagta 121
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||||||||||||||||||||
Sbjct: 96 gacaagaattatggaacggagggagta 122
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||||||||||||||||||||
Sbjct: 31 gacaagaattatggaacggagggagta 5
>RF00906;MIR1122;AAAA02000094.1/16089-15933 39946:Oryza sativa
Indica Group
Length = 157
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 77 attatggaacggagggagtagcta 100
||||||||||||||||||||||||
Sbjct: 24 attatggaacggagggagtagcta 1
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||| ||||||||||||||||
Sbjct: 106 gacaagaattttggaacggagggagta 132
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||| ||||||||||||||||
Sbjct: 31 gacaagaattttggaacggagggagta 5
>RF00906;MIR1122;AK252407.1/1225-1338 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||||| ||||||||||||||
Sbjct: 31 gacaagaattattgaacggagggagta 5
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 70 gacaagaattatggaacggagggagta 96
||||||||||||| |||||||||||||
Sbjct: 31 gacaagaattatgaaacggagggagta 5
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||||| ||||||||||||||
Sbjct: 95 gacaagaattatcgaacggagggagta 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 71 acaagaattatggaacggagggagta 96
|||||||||||| |||||||||||||
Sbjct: 30 acaagaattatgaaacggagggagta 5
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 70 gacaagaattatggaacggagggagta 96
||||| |||||||||||||||||||||
Sbjct: 31 gacaaaaattatggaacggagggagta 5
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||||||||||||||| ||||
Sbjct: 31 gacaagaattatggaacggaggaagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 gacaagaattatggaacggagggagta 96
|||||||||||||||||||| ||||||
Sbjct: 95 gacaagaattatggaacggaaggagta 121
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 gacaagaattatggaacggagggagta 96
||||||||||||| |||||||||||||
Sbjct: 95 gacaagaattatgaaacggagggagta 121
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 70 gacaagaattatggaacggagggagta 96
||||||||||||| |||||||||||||
Sbjct: 31 gacaagaattatgaaacggagggagta 5
>RF00906;MIR1122;AACV01023991.1/17005-17122 39947:Oryza sativa
Japonica Group
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ttatggaacggagggagtagct 99
||||||||||||||||||||||
Sbjct: 96 ttatggaacggagggagtagct 117
>RF00906;MIR1122;AAAA02033498.1/22640-22523 39946:Oryza sativa
Indica Group
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ttatggaacggagggagtagct 99
||||||||||||||||||||||
Sbjct: 96 ttatggaacggagggagtagct 117
