miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 52 acgacaagaattatggaacggagggagtact 82
|||||||||||||||||||||||||||||||
Sbjct: 33 acgacaagaattatggaacggagggagtact 3
Score = 46.1 bits (23), Expect = 7e-05
Identities = 51/60 (85%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 25 ataattcttgtcatggttttagttcaa----acgacaagaattatggaacggagggagta 80
|||||||||||| ||||||||||| || || ||||||||||||||| ||||| ||||
Sbjct: 20 ataattcttgtcgtggttttagttgaagaccactacaagaattatggaatggaggaagta 79
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 cgacaagaattatggaacggagggagtact 82
||||||||||||||||||||||||||||||
Sbjct: 96 cgacaagaattatggaacggagggagtact 125
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 54 gacaagaattatggaacggagggagta 80
|||||||||||||||||||||||||||
Sbjct: 31 gacaagaattatggaacggagggagta 5
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 54 gacaagaattatggaacggagggagtact 82
|||||||||||||||||||||||||||||
Sbjct: 96 gacaagaattatggaacggagggagtact 124
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 53 cgacaagaattatggaacggagggagta 80
||||||||||||||||||||||||||||
Sbjct: 32 cgacaagaattatggaacggagggagta 5
>RF00906;MIR1122;AK252407.1/1225-1338 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 114
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 52 acgacaagaattatggaacggagggagtact 82
|||||||||||||| ||||||||||||||||
Sbjct: 33 acgacaagaattattgaacggagggagtact 3
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 25 ataattcttgtcatggttttagttcaaa 52
|||||||||||| |||||||||||||||
Sbjct: 95 ataattcttgtcgtggttttagttcaaa 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 52 acgacaagaattatggaacggagggagtac 81
||||||||||||||||| ||| ||||||||
Sbjct: 82 acgacaagaattatggaccggggggagtac 111
>RF00906;MIR1122;EU730901.1/108914-109038 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 54 gacaagaattatggaacggagggagta 80
|||||||||||||||||||||||||||
Sbjct: 31 gacaagaattatggaacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 cgacaagaattatggaacggagggagta 80
|||||||||||||||||||| |||||||
Sbjct: 94 cgacaagaattatggaacggcgggagta 121
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 gacaagaattatggaacggagggagta 80
|||||||||||||||||||||||||||
Sbjct: 95 gacaagaattatggaacggagggagta 121
>RF00906;MIR1122;EU730899.1/99199-99323 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 53 cgacaagaattatggaacggagggagtac 81
||||||||||||||||||||||| |||||
Sbjct: 32 cgacaagaattatggaacggaggaagtac 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 gacaagaattatggaacggagggagtac 81
|||||||||||||||||||| |||||||
Sbjct: 95 gacaagaattatggaacggaaggagtac 122
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 54 gacaagaattatggaacggagggagtac 81
||||||||||||| ||||||||||||||
Sbjct: 31 gacaagaattatgaaacggagggagtac 4
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 cgacaagaattatggaacggagggagta 80
|||||||||||||| |||||||||||||
Sbjct: 94 cgacaagaattatgaaacggagggagta 121
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 gacaagaattatggaacggagggagta 80
|||||||||| ||||||||||||||||
Sbjct: 106 gacaagaattttggaacggagggagta 132
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 54 gacaagaattatggaacggagggagta 80
|||||||||| ||||||||||||||||
Sbjct: 31 gacaagaattttggaacggagggagta 5
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 55 acaagaattatggaacggagggagtac 81
|||||||||||| ||||||||||||||
Sbjct: 30 acaagaattatgaaacggagggagtac 4
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 gacaagaattatggaacggagggagta 80
|||||||||||| ||||||||||||||
Sbjct: 95 gacaagaattatcgaacggagggagta 121
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 54 gacaagaattatggaacggagggagta 80
||||| |||||||||||||||||||||
Sbjct: 31 gacaaaaattatggaacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 cgacaagaattatggaacggag 74
||||||||||||||||||||||
Sbjct: 94 cgacaagaattatggaacggag 115
>RF00906;MIR1122;EU730898.1/54746-54622 15368:Brachypodium
distachyon
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 54 gacaagaattatggaacggagggagta 80
||||||||||||| |||||||||||||
Sbjct: 31 gacaagaattatgaaacggagggagta 5
>RF00906;MIR1122;AY963808.1/8398-8494 4565:Triticum aestivum
(bread wheat)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 54 gacaagaattatggaacggagggagtactt 83
|||||| | |||||||||||||||||||||
Sbjct: 31 gacaagtaatatggaacggagggagtactt 2
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 51 aacgacaagaattatggaacggagggagtacttg 84
||||||||| ||| |||||||||||||||||||
Sbjct: 34 aacgacaagtatttaggaacggagggagtacttg 1
