miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01058;MIR806;AP005184.5/84409-84174 39947:Oryza sativa Japonica
Group
Length = 236
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 79 tatattatggaacggagggagtac 102
||||||||||||||||||||||||
Sbjct: 24 tatattatggaacggagggagtac 1
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 82 attatggaacggagggagtactag 105
||||||||||||||||||||||||
Sbjct: 24 attatggaacggagggagtactag 1
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 82 attatggaacggagggagtactag 105
||||||||||||||||||||||||
Sbjct: 104 attatggaacggagggagtactag 127
>RF00906;MIR1122;AAAA02018390.1/16986-17138 39946:Oryza sativa
Indica Group
Length = 153
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 78 ctatattatggaacggagggagtactag 105
||||||||||| ||||||||||||||||
Sbjct: 28 ctatattatgggacggagggagtactag 1
>RF00906;MIR1122;AACV01013196.1/2181-2029 39947:Oryza sativa
Japonica Group
Length = 153
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 ctatattatggaacggagggagtactag 105
||||||||||| ||||||||||||||||
Sbjct: 126 ctatattatgggacggagggagtactag 153
>RF00906;MIR1122;AAAA02012907.1/4650-4807 39946:Oryza sativa Indica
Group
Length = 158
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 79 tatattatggaacggagggagtac 102
||||||||||||||||||||||||
Sbjct: 27 tatattatggaacggagggagtac 4
>RF00906;MIR1122;AACV01013085.1/19238-19395 39947:Oryza sativa
Japonica Group
Length = 158
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 78 ctatattatggaacggagggagta 101
||||||||||||||||||||||||
Sbjct: 28 ctatattatggaacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 ctatattatggaacggagggagta 101
||||||||||||||||||||||||
Sbjct: 131 ctatattatggaacggagggagta 154
>RF00906;MIR1122;AACV01009198.1/25225-25351 39947:Oryza sativa
Japonica Group
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 79 tatattatggaacggagggagtac 102
||||||||||||||||||||||||
Sbjct: 27 tatattatggaacggagggagtac 4
>RF00906;MIR1122;AAAA02000094.1/16089-15933 39946:Oryza sativa
Indica Group
Length = 157
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 78 ctatattatggaacggagggagta 101
||||||||||||||||||||||||
Sbjct: 28 ctatattatggaacggagggagta 5
>RF00906;MIR1122;AAAA02017627.1/6518-6673 39946:Oryza sativa Indica
Group
Length = 156
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 77 actatattatggaacggagggagtacta 104
|||||||||||| |||||||||||||||
Sbjct: 29 actatattatgggacggagggagtacta 2
>RF01058;MIR806;AP003960.2/91001-90759 39947:Oryza sativa Japonica
Group
Length = 243
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 79 tatattatggaacggagggagta 101
|||||||||||||||||||||||
Sbjct: 24 tatattatggaacggagggagta 2
>RF00906;MIR1122;AK248893.1/1282-1190 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 79 tatattatggaacggagggagta 101
|||||||||||||||||||||||
Sbjct: 27 tatattatggaacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 tatattatggaacggagggagtacta 104
|||||||||| |||||||||||||||
Sbjct: 67 tatattatgggacggagggagtacta 92
>RF00906;MIR1122;AACV01010673.1/7331-7451 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 79 tatattatggaacggagggagtactag 105
|||||||||| ||||||||||||||||
Sbjct: 95 tatattatgggacggagggagtactag 121
>RF00906;MIR1122;AAAA02015085.1/16920-17040 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 79 tatattatggaacggagggagtactag 105
|||||||||| ||||||||||||||||
Sbjct: 27 tatattatgggacggagggagtactag 1
>RF00906;MIR1122;AAAA02007333.1/13137-13002 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 tatattatggaacggagggagta 101
|||||||||||||||||||||||
Sbjct: 110 tatattatggaacggagggagta 132
>RF00906;MIR1122;AP002869.1/81681-81526 39947:Oryza sativa Japonica
Group
Length = 156
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 atattatggaacggagggagtac 102
|||||||||||||||||||||||
Sbjct: 26 atattatggaacggagggagtac 4
>RF00906;MIR1122;AAAA02001357.1/661-786 39946:Oryza sativa Indica
Group
Length = 126
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 atattatggaacggagggagtac 102
|||||||||||||||||||||||
Sbjct: 26 atattatggaacggagggagtac 4
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 attatggaacggagggagtact 103
||||||||||||||||||||||
Sbjct: 103 attatggaacggagggagtact 124
>RF00906;MIR1122;AAAA02018504.1/8341-8217 39946:Oryza sativa Indica
Group
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 79 tatattatggaacggagggagtacta 104
|||||||||| |||||||||||||||
Sbjct: 27 tatattatgggacggagggagtacta 2
>RF00906;MIR1122;AL662954.2/81377-81511 39947:Oryza sativa Japonica
Group
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 tatattatggaacggagggagtacta 104
|||||||||| |||||||||||||||
Sbjct: 109 tatattatgggacggagggagtacta 134
>RF00906;MIR1122;AACV01001132.1/47322-47207 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 77 actatattatggaacggagggagtac 102
|||||||||||| |||||||||||||
Sbjct: 29 actatattatgggacggagggagtac 4
>RF00906;MIR1122;AAAA02027850.1/6458-6302 39946:Oryza sativa Indica
Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 ctatattatggaacggagggagtact 103
||||||| ||||||||||||||||||
Sbjct: 130 ctatattctggaacggagggagtact 155
>RF00906;MIR1122;AAAA02009816.1/6724-6859 39946:Oryza sativa Indica
Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 atattatggaacggagggagta 101
||||||||||||||||||||||
Sbjct: 111 atattatggaacggagggagta 132
>RF00906;MIR1122;AP008212.1/5825633-5825757 39947:Oryza sativa
Japonica Group
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 tatattatggaacggagggagtacta 104
|||||||||| |||||||||||||||
Sbjct: 99 tatattatgggacggagggagtacta 124
>RF00906;MIR1122;AAAA02021630.1/597-753 39946:Oryza sativa Indica
Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 79 tatattatggaacggagggagtacta 104
|||||||| |||||||||||||||||
Sbjct: 27 tatattatagaacggagggagtacta 2
