miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 89.7 bits (45), Expect = 6e-18
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 4 aactacgccctccgtcncataangtaagacgttttttcacactacactagtgtcaaaaaa 63
|||||| ||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 110 aactactccctccgtcccataatgtaggacgttttttgacactacactagtgtcaaaaaa 51
Query: 64 cgt 66
|||
Sbjct: 50 cgt 48
Score = 77.8 bits (39), Expect = 2e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 27 gtaagacgttttttcacactacactagtgtcaaaaaacgtnntacattatggaacggagg 86
|||||||||||||| |||||| |||||||||||||||| |||||||||| |||||||
Sbjct: 43 gtaagacgttttttgacactagtgtagtgtcaaaaaacgtcctacattatgggacggagg 102
Query: 87 gagta 91
|||||
Sbjct: 103 gagta 107
Score = 58.0 bits (29), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 55 gtcaaaaaacgtnntacattatggaacggagggagtatt 93
|||||||||||| |||||||||| ||||||||||||||
Sbjct: 41 gtcaaaaaacgtcttacattatgggacggagggagtatt 3
Score = 48.1 bits (24), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 ccctccgtcncataangtaagacgtttttt 40
||||||||| ||||| ||||||||||||||
Sbjct: 9 ccctccgtcccataatgtaagacgtttttt 38
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 11 ccctccgtcncataangtaagacgttttttcacactacactagtgtcaaaaaacgtnnta 70
||||||||| ||||| |||||||||||||| ||||||| || ||||||||||| | ||
Sbjct: 85 ccctccgtcccataatgtaagacgttttttgacactacgcttatgtcaaaaaacatccta 26
Query: 71 cattatggaacggagggagta 91
||||||| ||||||||||||
Sbjct: 25 tattatgggacggagggagta 5
Score = 61.9 bits (31), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 51 tagtgtcaaaaaacgtnntacattatggaacggagggagta 91
|||||||||||||||| |||||||||| ||||||||||||
Sbjct: 49 tagtgtcaaaaaacgtcttacattatgggacggagggagta 89
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 11 ccctccgtcncataangtaagacgttttttcacactacactagtgtcaaaaaacgtnnta 70
||||||||| ||||| |||||||| ||||| ||||||||||||||| |||||||| ||
Sbjct: 9 ccctccgtcccataatgtaagacgctttttgacactacactagtgtggaaaaacgtttta 68
Query: 71 cattatggaacggagggagta 91
||||||| || |||||||||
Sbjct: 69 tattatgggacagagggagta 89
Score = 71.9 bits (36), Expect = 1e-12
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 5 actacgccctccgtcncataangtaagacgttttttcacactacactagtgtcaaaaaac 64
||||| ||||| ||| ||||| ||| |||||||| ||||||| |||||||||||| |
Sbjct: 91 actactccctctgtcccataatataaaacgtttttccacactagtgtagtgtcaaaaagc 32
Query: 65 gtnntacattatggaacggagggagtat 92
|| |||||||||| |||||||||||||
Sbjct: 31 gtcttacattatgggacggagggagtat 4
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 11 ccctccgtcncataangtaagacgttttttcacactacactagtgtcaaaaaacgtnnta 70
||||||||| ||||| |||||| ||||||| | ||||||||||||||||||| || ||
Sbjct: 9 ccctccgtcccataatgtaagaggttttttgatactacactagtgtcaaaaagtgtctta 68
Query: 71 cattatggaacggagggagta 91
|||||| | | ||||||||||
Sbjct: 69 cattataggatggagggagta 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 6 ctacgccctccgtcncataangtaagacgttttttcacactacactagtgtcaaaaaacg 65
|||| |||||| || |||| ||||||| ||||| |||||| |||| |||||||||
Sbjct: 90 ctactccctccatcctataatgtaagacactttttgacactagtgtagtatcaaaaaacc 31
Query: 66 tnntacattatggaacggagggagta 91
| |||||||||| ||||||||||||
Sbjct: 30 tcttacattatgggacggagggagta 5
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 63.9 bits (32), Expect = 4e-10
Identities = 70/83 (84%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 12 cctccgtcncataangtaagacgttttttc--acactacactagtgtcaaaaaacgtnnt 69
|||||||| ||||| |||||||||||||| |||||| ||||||||||||| || | |
Sbjct: 86 cctccgtcccataatgtaagacgtttttttttacactatactagtgtcaaaagacatcct 27
Query: 70 acattatggaacggagggagtat 92
||||||||| || | ||||||||
Sbjct: 26 acattatgggacagcgggagtat 4
>RF00906;MIR1122;EU660903.1/8169-8251 4565:Triticum aestivum
(bread wheat)
Length = 83
Score = 63.9 bits (32), Expect = 4e-10
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 48 cactagtgtcaaaaaacgtnntacattatggaacggagggagtatt 93
||||||||||||||||||| |||||||||| || |||||||||||
Sbjct: 48 cactagtgtcaaaaaacgtcctacattatgggactgagggagtatt 3
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 63.9 bits (32), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 16 cgtcncataangtaagacgttttttcacactacactagtgtc 57
|||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 14 cgtcccataatgtaagacgttttttgacactacactagtgtc 55
Score = 60.0 bits (30), Expect = 6e-09
Identities = 72/88 (81%), Gaps = 7/88 (7%)
Strand = Plus / Minus
Query: 12 cctccgtcncataangtaagacgttttttcacactacac-------tagtgtcaaaaaac 64
|||||||| ||||| |||||||||||||| |||||| || ||||||||||||||
Sbjct: 91 cctccgtcccataatgtaagacgttttttgacactagacactagtgtagtgtcaaaaaac 32
Query: 65 gtnntacattatggaacggagggagtat 92
|| |||||||||| ||| ||| |||||
Sbjct: 31 gtcttacattatgggacgaaggtagtat 4
>RF00906;MIR1122;AM932680.1/129176-129267 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 21 cataangtaagacgttttttcacactacactagtgtcaaaaaacgtnntacattatggaa 80
||||| ||||||||||||| ||||||||||||| ||||||||| ||| |||||| |
Sbjct: 19 cataatgtaagacgtttttag-cactacactagtgcgaaaaaacgtattacgttatggga 77
Query: 81 cggagggagta 91
|||||||||||
Sbjct: 78 cggagggagta 88
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 60.0 bits (30), Expect = 6e-09
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 12 cctccgtcncataangtaagacg-ttttttcacactacactagtgtcaaaaaacgtnnta 70
|||||||| ||||| |||||||| |||||| ||||||||||| ||| |||| |||| ||
Sbjct: 10 cctccgtcccataatgtaagacgtttttttgacactacactaatgttaaaagacgtctta 69
Query: 71 cattatggaacgga 84
|||| ||| |||||
Sbjct: 70 cattttgggacgga 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 65/79 (82%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 14 tccgtcncataangtaagacgttttttcacactacactagtgtcaa-aaaacgtnntaca 72
|||||| || || ||||||||| |||| ||| || ||||||||| ||||||| ||||
Sbjct: 83 tccgtcccaaaatgtaagacgtcttttaacattagtgtagtgtcaaaaaaacgtcttaca 24
Query: 73 ttatggaacggagggagta 91
|||||| ||||||| ||||
Sbjct: 23 ttatgggacggaggaagta 5
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 60.0 bits (30), Expect = 6e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 47 acactagtgtcaaaaaacgtnntacattatggaacggagg 86
|||||||||||||||||||| |||||||||| |||||||
Sbjct: 23 acactagtgtcaaaaaacgtcttacattatgggacggagg 62
Score = 52.0 bits (26), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 12 cctccgtcncataangtaagacgttttttcacacta 47
|||||||| ||||| |||||||||||||| ||||||
Sbjct: 62 cctccgtcccataatgtaagacgttttttgacacta 27
>RF00906;MIR1122;FJ711031.1/1293-1203 4586:Psathyrostachys juncea
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 27 gtaagacgttttttcacactacactagtgtcaaaaaacgtnntacattatggaacggagg 86
|||||||||||||| ||||| |||||||||||||||| || ||||||| || ||||
Sbjct: 23 gtaagacgttttttgacactgtcatagtgtcaaaaaacgtcttatattatgggacagagg 82
Query: 87 gagta 91
|||||
Sbjct: 83 gagta 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 73/89 (82%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 6 ctacgccctccgtcncataangtaagacgttttttcacactacactagtgtcaaaaaacg 65
|||| ||||| ||| ||||| ||||||||||||| |||||| ||||||||||||||
Sbjct: 88 ctactccctctgtcccataatataagacgttttttgacactatgacagtgtcaaaaaacg 29
Query: 66 tnntacattatggaacggagggagtatta 94
| |||| |||| || ||||||||||||
Sbjct: 28 tcttaca--atgggacagagggagtatta 2
>RF00906;MIR1122;DQ247832.1/803-901 4487:Aegilops searsii
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 16 cgtcncataangtaagacgttttttcacactacactagtgtc 57
|||| ||||| |||||||||||| | ||||||||||| ||||
Sbjct: 14 cgtcccataatgtaagacgttttntgacactacactantgtc 55
Score = 48.1 bits (24), Expect = 2e-05
Identities = 70/88 (79%), Gaps = 7/88 (7%)
Strand = Plus / Minus
Query: 12 cctccgtcncataangtaagacgttttttcacactacac-------tagtgtcaaaaaac 64
|||||||| ||||| |||||||||||| | |||||| || |||||||| |||||
Sbjct: 91 cctccgtcccataatgtaagacgttttntgacactagacantagtgtagtgtcanaaaac 32
Query: 65 gtnntacattatggaacggagggagtat 92
|| |||||||||| ||| ||| |||||
Sbjct: 31 gtcttacattatgggacgaaggtagtat 4
>RF00906;MIR1122;EF115142.1/468-377 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 51 tagtgtcaaaaaacgtnntacattatggaacggagggagta 91
|||||||||||||||| || |||||| ||||||||||||
Sbjct: 48 tagtgtcaaaaaacgtcttatattatgttacggagggagta 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 11 ccctccgtcncataangtaagacgttttttcacactacactagtgtcaaaaa 62
|||||||| ||||| ||||||||||||| |||||| | |||||||||||
Sbjct: 84 ccctccgtaacataatataagacgttttttgacactatgccagtgtcaaaaa 33
>RF00906;MIR1122;FJ711046.1/1205-1295 220462:Leymus arenarius
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 27 gtaagacgttttttcacactacactagtgtcaaaaaacgtnntacattatggaacggagg 86
|||||||||||||| ||||| |||||||||||||||| || ||||||| || || |
Sbjct: 69 gtaagacgttttttgacactgtcatagtgtcaaaaaacgtcttatattatgggacagaag 10
Query: 87 gagta 91
|||||
Sbjct: 9 gagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 64/78 (82%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 17 gtcncataangtaagacgttttttcacactacactagtgtcaaaaaacgtnntacattat 76
||| ||||| ||||||||||||| |||||| ||||||||||||||| |||| ||
Sbjct: 15 gtcccataatataagacgttttttgacactatgacagtgtcaaaaaacgtcttaca--at 72
Query: 77 ggaacggagggagtatta 94
|| || ||||||||||||
Sbjct: 73 gggacagagggagtatta 90
>RF00906;MIR1122;AAAA02007747.1/9703-9846 39946:Oryza sativa Indica
Group
Length = 144
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tacattatggaacggagggagta 91
|||||||||||||||||||||||
Sbjct: 118 tacattatggaacggagggagta 140
>RF00906;MIR1122;AP008209.1/1122239-1122380 39947:Oryza sativa
Japonica Group
Length = 142
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 69 tacattatggaacggagggagta 91
|||||||||||||||||||||||
Sbjct: 27 tacattatggaacggagggagta 5
>RF00906;MIR1122;CT009735.1/55205-55297 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 11 ccctccgtcncataangtaagacgttttttcacactacactagtgtcaaaaa 62
||||||||| ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 85 ccctccgtcccataatataagagcgtttttgacactgcactagtgtcaaaaa 34
>RF00906;MIR1122;AY491681.1/77211-77302 4568:Triticum monococcum
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 tttttcacactacactagtgtcaaaa 61
||||| ||||||||||||||||||||
Sbjct: 34 tttttgacactacactagtgtcaaaa 59
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 67/82 (81%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 ccctccgtcncataangtaagacgttttttc-acactacactagtgtcaaaaaacgtnnt 69
||||| ||| ||||| |||||||||||||| ||| || |||| | |||||| || |
Sbjct: 9 ccctctgtctcataatgtaagacgtttttttgacattagtgtagttttaaaaaatgtctt 68
Query: 70 acattatggaacggagggagta 91
||||||||| ||||||||||||
Sbjct: 69 acattatgggacggagggagta 90
>RF00906;MIR1122;AY013246.1/69877-69969 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 36 tttttcacactacactagtgtcaaaaaacgtnntacattatggaacggagggagta 91
||||| ||||||||||| ||||||||| | || ||||||| ||||||||||||
Sbjct: 34 tttttgacactacactaatgtcaaaaatgctcttatattatgggacggagggagta 89
>RF00906;MIR1122;EF059989.1/226094-226187 29664:Brachypodium
sylvaticum
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttatggaacggagggagtatta 94
||||||||||||||||||||||
Sbjct: 72 ttatggaacggagggagtatta 93
>RF00906;MIR1122;EU730898.1/63863-63739 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 72 attatggaacggagggagtatt 93
||||||||||||||||||||||
Sbjct: 24 attatggaacggagggagtatt 3
>RF00906;MIR1122;AAAA02035929.1/12415-12280 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 69 tacattatggaacggagggagtatta 94
|||||| |||||||||||||||||||
Sbjct: 27 tacattgtggaacggagggagtatta 2
