miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 77.8 bits (39), Expect = 3e-14
Identities = 70/81 (86%), Gaps = 7/81 (8%)
Strand = Plus / Plus
Query: 21 atactccctccataaagaaatataagagcgt-------atagtgatctaaacactcttat 73
|||||||||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 4 atactccctctgtaaagaaatataagagcgtttagatcatagtgatctaaacgctcttat 63
Query: 74 atttctttacagaaggagtac 94
||||||||||||| |||||||
Sbjct: 64 atttctttacagagggagtac 84
Score = 65.9 bits (33), Expect = 1e-10
Identities = 67/79 (84%), Gaps = 7/79 (8%)
Strand = Plus / Minus
Query: 22 tactccctccataaagaaatataagagcgtatag-------tgatctaaacactcttata 74
||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcactatgatctaaacgctcttata 24
Query: 75 tttctttacagaaggagta 93
|||||||||||| ||||||
Sbjct: 23 tttctttacagagggagta 5
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 75.8 bits (38), Expect = 1e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 47 tagtgatctaaacactcttatatttctttacagagggagtac 88
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 67.9 bits (34), Expect = 3e-11
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 21 atactccctccataaagaaatataagagcgt--atagtgatctaaacactcttatatttc 78
|||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct: 4 atactccctctgtaaagaaatataagatcgtttatagtgatctaaatgatcttatatttc 63
Query: 79 tttacagaaggag 91
|||||||| ||||
Sbjct: 64 tttacagagggag 76
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 68 tcttatatttctttacagaaggagta 93
||||||||||||||||||| ||||||
Sbjct: 30 tcttatatttctttacagagggagta 5
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||||||||| || ||||||||||||||||||||||||||||
Sbjct: 45 tagtgatctagacgctcttatatttctttacagaaggagtac 4
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagta 93
|||| |||||||||||||||||||||||||| || ||||||
Sbjct: 49 tagttatctaaacactcttatatttctttacggagggagta 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 22 tactccctccataaagaaatataagag 48
|||||||||| ||||||||||||||||
Sbjct: 89 tactccctccgtaaagaaatataagag 63
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||||||||||||||||||||||| |||||||| |||||||
Sbjct: 45 tagtgatctaaacactcttatattagtttacagagggagtac 4
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacactcttatatttctttacaga 86
||||||||||||| ||||||||||||||||||||
Sbjct: 49 tagtgatctaaacgctcttatatttctttacaga 82
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 54 agtgatctaaacactcttatatttctttacaga 86
|||||||||||| ||||||||||||||||||||
Sbjct: 44 agtgatctaaacgctcttatatttctttacaga 12
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagta 93
||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 22 tactccctccataaagaaatataaga 47
||||||||||| ||||||||||||||
Sbjct: 95 tactccctccacaaagaaatataaga 70
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 52 atagtgatctaaacactcttatatttctttac 83
|||||||||||||| |||||||||||||||||
Sbjct: 48 atagtgatctaaacgctcttatatttctttac 79
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 21 atactccctccataaagaaatataagagcgt 51
||||||||||| |||||||||||||||||||
Sbjct: 4 atactccctccgtaaagaaatataagagcgt 34
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagta 93
|||||| |||||| ||||||||||||||||| || ||||||
Sbjct: 45 tagtgacctaaacgctcttatatttctttacggagggagta 5
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 52 atagtgatctaaacactcttatatttctttacagaaggagtac 94
|||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 46 atagtgatctaaacgctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 52 atagtgatctaaacactcttatatttctttacagaaggagta 93
||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 46 atagtgatctaaacactcttatattagtttacggagggagta 5
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||||||||||||||||||||||| |||| ||| |||||||
Sbjct: 45 tagtgatctaaacactcttatattggtttatagagggagtac 4
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||| ||||||||||||||||||| |||||||| |||||||
Sbjct: 45 tagttatctaaacactcttatattagtttacagagggagtac 4
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
||||| ||||||| ||||||||||||||||| || |||||||
Sbjct: 45 tagtgctctaaacgctcttatatttctttaccgagggagtac 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 22 tactccctccataaagaaatataagagc 49
||||||||| ||||||||||||||||||
Sbjct: 89 tactccctctataaagaaatataagagc 62
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 22 tactccctccataaagaaatataagagcgt 51
||||||||| |||||||||||||||||||
Sbjct: 5 tactccctcggtaaagaaatataagagcgt 34
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||| ||||||| |||||||||||||||| ||| |||||||
Sbjct: 49 tagttatctaaatgctcttatatttctttatagagggagtac 90
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacaga 86
||||||||||||| ||||||||||| ||||||||
Sbjct: 45 tagtgatctaaacgctcttatatttgtttacaga 12
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacactcttatatttcttt 81
|||||||||| ||||||||||||||||||
Sbjct: 49 tagtgatctagacactcttatatttcttt 77
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||||||||||||| |||||||||||| ||| || |||||||
Sbjct: 45 tagtgatctaaacattcttatatttctgtacggagggagtac 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 tcttatatttctttacagaaggagta 93
||||||||||||||||||| ||||||
Sbjct: 64 tcttatatttctttacagagggagta 89
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagta 93
|||||||||||| ||||||||||||||||| || ||||||
Sbjct: 49 tagtgatctaaatgctcttatatttctttacggagggagta 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 22 tactccctccataaagaaatataagagc 49
|||||||||| |||||||||||||||||
Sbjct: 89 tactccctccgtaaagaaatataagagc 62
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagta 93
||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 45 tagtgatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 52 atagtgatctaaacactcttatatttctttacagaaggagtac 94
||||||||| ||||||||||||||| ||||| || |||||||
Sbjct: 46 atagtgatcaaaacactcttatattaatttacggagggagtac 4
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttac 83
||||||||||||| ||||||||||||||||
Sbjct: 45 tagtgatctaaacgttcttatatttctttac 15
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 19 taatactccctccataaagaaatataagagc 49
|||||||||||||||||| |||||||||||
Sbjct: 92 taatactccctccataaactaatataagagc 62
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 52 atagtgatctaaacactcttatatttctttacagaaggagta 93
|||||||||||||| ||||||||| |||||||| ||||||
Sbjct: 48 atagtgatctaaacgttcttatattagtttacagagggagta 89
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||||||||||| |||||||||| |||||||| |||||||
Sbjct: 45 tagtgatctaaaagctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||| ||||||| ||||||||||| |||||||| |||||||
Sbjct: 45 tagtaatctaaatactcttatattagtttacagagggagtac 4
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||||||||||| |||||||||| |||||||| |||||||
Sbjct: 48 tagtgatctaaatgctcttatattagtttacagagggagtac 89
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
|||| ||||||||||| ||||||| |||||||| |||||||
Sbjct: 45 tagttatctaaacacttttatattagtttacagagggagtac 4
