miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 65.9 bits (33), Expect = 4e-11
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 43 tagtgatctaaacgctcttatatttctttacagagggagta 83
Score = 60.0 bits (30), Expect = 2e-09
Identities = 37/38 (97%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 16 tgatctaaacgctct-atatttctttacagagggagta 52
||||||||||||||| ||||||||||||||||||||||
Sbjct: 42 tgatctaaacgctcttatatttctttacagagggagta 5
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 60.0 bits (30), Expect = 2e-09
Identities = 37/38 (97%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 12 gtagtgatctaaacgctc-tatatttctttacagaggg 48
|||||||||||||||||| |||||||||||||||||||
Sbjct: 48 gtagtgatctaaacgctcttatatttctttacagaggg 85
Score = 56.0 bits (28), Expect = 4e-08
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 14 agtgatctaaacgctct-atatttctttacagagggagta 52
||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 44 agtgatctaaacgctcttatatttctttacagaggtagta 5
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 60.0 bits (30), Expect = 2e-09
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 12 gtagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 46 gtagtgatctaaacactcttatatttctttacagagggagta 87
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 58.0 bits (29), Expect = 1e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 52.0 bits (26), Expect = 6e-07
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 12 gtagtgatctaaacgctct-atatttctttacagagggagta 52
||||||||||||||||||| |||||| || ||||||||||||
Sbjct: 46 gtagtgatctaaacgctctcatatttattcacagagggagta 5
Score = 42.1 bits (21), Expect = 6e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 13 tagtgatctaaacgctc-tatatttctttacagagggagta 52
||||||||||||||||| |||||| |||||| ||||||||
Sbjct: 52 tagtgatctaaacgctcttatattattttacatagggagta 92
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 52.0 bits (26), Expect = 6e-07
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 12 gtagtgatctaaacgctct-atatttctttacagagggagta 52
||||||| ||||||||||| |||||||||||| |||||||||
Sbjct: 46 gtagtgacctaaacgctcttatatttctttacggagggagta 5
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 52.0 bits (26), Expect = 6e-07
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 13 tagtgatctaaacgctc-tatatttctttacagaggga 49
||||||||||||||||| ||||||||||||| ||||||
Sbjct: 49 tagtgatctaaacgctcttatatttctttactgaggga 86
Score = 42.1 bits (21), Expect = 6e-04
Identities = 34/37 (91%), Gaps = 1/37 (2%)
Strand = Plus / Minus
Query: 17 gatctaaacgctct-atatttctttacagagggagta 52
||||||||||| || |||||| |||||||||||||||
Sbjct: 41 gatctaaacgcccttatatttgtttacagagggagta 5
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 2e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 49 tagtgatctaaatgctcttatatttctttacggagggagta 89
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 2e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
||||| |||||||||||| |||||||||||| |||||||||
Sbjct: 45 tagtgctctaaacgctcttatatttctttaccgagggagta 5
Score = 44.1 bits (22), Expect = 1e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 12 gtagtgatctaaacgctct-atatttctttacagagggagta 52
||||| ||||||| ||||| ||||||||||| ||||||||||
Sbjct: 48 gtagttatctaaatgctcttatatttctttatagagggagta 89
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 50.1 bits (25), Expect = 2e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctc-tatatttctttacagagggagta 52
||||||||||||||||| |||||| |||||||||||||||
Sbjct: 45 tagtgatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 2e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 45 tagtgatctagacgctcttatatttctttacagaaggagta 5
Score = 44.1 bits (22), Expect = 1e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 12 gtagtgatctaaacgctct-atatttctttacagagggagta 52
||||| |||||||| |||| |||||||||||| |||||||||
Sbjct: 48 gtagttatctaaacactcttatatttctttacggagggagta 89
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 50.1 bits (25), Expect = 2e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctc-tatatttctttacagagggagta 52
||||||||||||||||| |||||| |||||||||||||||
Sbjct: 45 tagtgatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 48.1 bits (24), Expect = 9e-06
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 12 gtagtgatctaaacgctc-tatatttctttacagag 46
|||||||||||||||||| ||||||| |||||||||
Sbjct: 46 gtagtgatctaaacgctcttatatttgtttacagag 11
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 30 tatatttctttacagagggagta 52
|||||||||||||||||||||||
Sbjct: 27 tatatttctttacagagggagta 5
Score = 46.1 bits (23), Expect = 4e-05
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggag 50
|||||||||||| | ||| ||||||||||||||||||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggag 76
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tatatttctttacagagggagta 52
|||||||||||||||||||||||
Sbjct: 67 tatatttctttacagagggagta 89
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 1e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 12 gtagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||||||| |||||| ||||| |||||||||||||||
Sbjct: 46 gtagtgatctaagcgctcttatattagtttacagagggagta 5
Score = 42.1 bits (21), Expect = 6e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
||||||||||| |||||| ||||| |||||||||||||||
Sbjct: 49 tagtgatctaagcgctcttatattagtttacagagggagta 89
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 44.1 bits (22), Expect = 1e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 12 gtagtgatctaaacgctc-tatatttctttacagagggagta 52
||||||||||||| |||| |||||| |||||||||||||||
Sbjct: 47 gtagtgatctaaatgctcttatattagtttacagagggagta 88
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||||||||| ||| ||||| |||||||||||||||
Sbjct: 49 tagtgatctaaacgttcttatattagtttacagagggagta 89
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 45 tagtgatctaaacactcttatattagtttacagagggagta 5
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 45 tagtgatctaaatgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 42.1 bits (21), Expect = 6e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 45 tagtgatctaaaagctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
|||| ||||||||||||| ||||| |||||||||||||||
Sbjct: 45 tagtaatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 42.1 bits (21), Expect = 6e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 13 tagtgatctaaacgctct-atatttctttacagagggagta 52
|||||||| ||||||||| ||||| |||||||||||||||
Sbjct: 45 tagtgatccaaacgctcttatattaatttacagagggagta 5
