miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 11 ctccgtcccataatatagaacgttttttgacactacacta 50
|||||||||||||| ||| |||||||||||||||||||||
Sbjct: 101 ctccgtcccataatgtaggacgttttttgacactacacta 62
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 2 atatagtctctccgtcccataatatagaacgttttttgacactacacta 50
||||| || |||||||||||||| || ||| |||||||||||||||||
Sbjct: 2 atatactccctccgtcccataatgtaagacgctttttgacactacacta 50
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 14 cgtcccataatatagaacgttttttgacactacacta 50
||||||||||| || |||||||||||||||||||||
Sbjct: 14 cgtcccataatgtaagacgttttttgacactacacta 50
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 ctccgtcccataatatagaacgttttttgacacta 45
|||||||||||||| || ||||||||||||||||
Sbjct: 90 ctccgtcccataatgtaagacgttttttgacacta 56
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 ctccgtcccataatatagaacgttttttgaca 42
|||||||||||||||||| | |||||||||||
Sbjct: 11 ctccgtcccataatataggatgttttttgaca 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 11 ctccgtcccataatatagaacgttttttgacactac 46
|||||||||||||| || |||||||||||||||||
Sbjct: 83 ctccgtcccataatgtaagacgttttttgacactac 48
>RF00906;MIR1122;AF343492.1/1298-1206 58531:Aegilops speltoides
subsp. speltoides
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 11 ctccgtcccataatatagaacgttttttgacactacacta 50
||||||||||||||||| || |||||||||||||||||
Sbjct: 83 ctccgtcccataatataaaagcgtttttgacactacacta 44
>RF00906;MIR1122;EU660903.1/8169-8251 4565:Triticum aestivum
(bread wheat)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 15 gtcccataatatagaacgttttttgacacta 45
|||||||||| ||| ||||||||||||||||
Sbjct: 15 gtcccataatgtaggacgttttttgacacta 45
>RF00906;MIR1122;FJ711031.1/1293-1203 4586:Psathyrostachys juncea
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 15 gtcccataatatagaacgttttttgacacta 45
||||||||||||| ||||||||||||||||
Sbjct: 77 gtcccataatataagacgttttttgacacta 47
>RF00906;MIR1122;FJ711046.1/1205-1295 220462:Leymus arenarius
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 15 gtcccataatatagaacgttttttgacacta 45
||||||||||||| ||||||||||||||||
Sbjct: 15 gtcccataatataagacgttttttgacacta 45
>RF00906;MIR1122;EF067844.1/466927-467019 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 8 tctctccgtcccataatatagaacgttttttgacactacacta 50
|||||||||| ||||||||| || |||||||||||||||||
Sbjct: 86 tctctccgtctcataatataaaaacgtttttgacactacacta 44
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 ctccgtcccataatatagaacgttttttgacacta 45
|||||||||||||| || ||||||||||||||||
Sbjct: 61 ctccgtcccataatgtaagacgttttttgacacta 27
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 11 ctccgtcccataatatagaacgtttt-ttgacactacactaa 51
|||||||||||||| || ||||||| |||||||||||||||
Sbjct: 11 ctccgtcccataatgtaagacgtttttttgacactacactaa 52
>RF00906;MIR1122;AAAA02020328.1/21348-21502 39946:Oryza sativa
Indica Group
Length = 155
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 atatagtctctccgtcccataatata 27
||||| ||||||||||||||||||||
Sbjct: 2 atatactctctccgtcccataatata 27
