miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 121 bits (61), Expect = 2e-27
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| ||||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||||||||||||||| | |||||||| |||| |||| |||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgc 74
||||||| ||||||||||| |||||| | |||||||||||||||||||||||||||| ||
Sbjct: 90 ctactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgc 31
Query: 75 tcttatattagtttaaggagggagta 100
|||||||||| |||| ||||||||||
Sbjct: 30 tcttatattaatttacggagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 111 bits (56), Expect = 2e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 76 cttatattagtt 87
||||||||||||
Sbjct: 65 cttatattagtt 76
Score = 73.8 bits (37), Expect = 4e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||||| ||| |||||||||||| | ||||||||||||| |||| ||||||| |||
Sbjct: 88 tactccct-tgtgaactaatataagagcgtttagatcactactttagtgatctaaacgct 30
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgc 74
|||||||||||||||||||||||||| | | |||||||||||||||||| |||||| ||
Sbjct: 90 ctactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgc 31
Query: 75 tcttatattagtttaaggagggagta 100
||||||||||||||| |||||||||
Sbjct: 30 tcttatattagtttacagagggagta 5
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| | | ||||||||||| |||| |||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| |||||||||
Sbjct: 65 cttatattagtttacagagggagta 89
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 14 actactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatg 73
||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||
Sbjct: 3 actactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatg 62
Query: 74 ctcttatattagtttaaggagggagtactt 103
|| ||||||||||||| | ||||||||||
Sbjct: 63 cttttatattagtttacagggggagtactt 92
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||| |||||||||||||||| | |||||| ||||| |||||||||||| |||
Sbjct: 89 tactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgct 30
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacact 30
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| ||||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
Score = 83.8 bits (42), Expect = 5e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||||||||||||||| |||||||||| |||| |||| ||||||||| |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 76 cttatattagtttaaggagggagtac 101
||||||||||||| ||||||||||
Sbjct: 65 tttatattagtttacagagggagtac 90
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||| |||
Sbjct: 5 tactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgct 64
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| ||||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 73.8 bits (37), Expect = 4e-13
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 13 aactactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaat 72
|||||||||||| ||||||||||||||| | ||||||| ||||| |||| |||||||
Sbjct: 92 aactactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaac 33
Query: 73 gctcttatattagtttaaggagggagtac 101
|||||||||| ||||| ||||||||||
Sbjct: 32 actcttatattggtttatagagggagtac 4
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| | ||||||||||||| ||||| |||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgct 64
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| ||||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 101 bits (51), Expect = 2e-21
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 12 aaactactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaa 71
||||||||||||| ||||||||||||||| | ||||||| |||||| |||| |||||||
Sbjct: 93 aaactactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaa 34
Query: 72 tgctcttatattagtttaaggagggagtact 102
||||||||||||||||| |||||||||||
Sbjct: 33 cgctcttatattagtttacagagggagtact 3
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 103 bits (52), Expect = 5e-22
Identities = 79/87 (90%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| |||||||||| |||||| |||| |||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaacgct 62
Query: 76 cttatattagtttaaggagggagtact 102
||||||||||||| ||||||||||||
Sbjct: 63 attatattagtttacggagggagtact 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| |||||||||||||| | ||||||| |||| |||| ||||||| ||
Sbjct: 87 tactccctccgtaaactaatataatagcgtttaga--actattttagttatctaaacact 30
Query: 76 cttatattagtttaaggagggagtact 102
|||||||||||||| |||||||||||
Sbjct: 29 cttatattagtttacagagggagtact 3
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 103 bits (52), Expect = 5e-22
Identities = 79/87 (90%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||||||||||||||||||||| |||||||||| |||||| |||| |||||| |||
Sbjct: 5 tactccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacgct 62
Query: 76 cttatattagtttaaggagggagtact 102
|||||||||||||| ||||||||||||
Sbjct: 63 cttatattagtttacggagggagtact 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||||||||||||||| | ||||||| |||| |||| ||||||| ||
Sbjct: 87 tactccctccgtaaactaatataagagcgtttaga--actattttagttatctaaacact 30
Query: 76 cttatattagtttaaggagggagtact 102
||||||||||||| |||||||||||
Sbjct: 29 tttatattagtttacagagggagtact 3
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 99.6 bits (50), Expect = 8e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||||||||||||||| | |||||| |||||||| |||| |||||||||||
Sbjct: 5 tactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgct 64
Query: 76 cttatattagttta 89
||||||||||||||
Sbjct: 65 cttatattagttta 78
Score = 85.7 bits (43), Expect = 1e-16
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||| |||||||||||||||||||| | |||||||||||| |||| | ||||| |||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 76 cttatattagtttaaggagggagtact 102
|||||||||||||| ||||||||||||
Sbjct: 29 cttatattagtttacggagggagtact 3
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 99.6 bits (50), Expect = 8e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||||||||||||||||||||| | |||||||||||| || |||||||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 76 cttatattagtttaaggagggagtac 101
|||||||||||||| |||||||||||
Sbjct: 65 cttatattagtttatggagggagtac 90
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| |||||||||||||| | ||||||| | |||| |||| |||||||||||
Sbjct: 89 tactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgct 30
Query: 76 cttatattagtttaaggagggagta 100
||||||||||||| |||||||||
Sbjct: 29 tttatattagtttacagagggagta 5
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 99.6 bits (50), Expect = 8e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| || ||||||| |||||| |||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgct 64
Query: 76 cttatattagttta 89
||||||||||||||
Sbjct: 65 cttatattagttta 78
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 26 gtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctcttatattag 85
||||||||||||||| | |||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 79 gtaaactaatataagagcatttagaacactattttagtaatctaaatactcttatattag 20
Query: 86 tttaaggagggagtac 101
|||| ||||||||||
Sbjct: 19 tttacagagggagtac 4
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 97.6 bits (49), Expect = 3e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgc 74
|||||||||||||||| ||||||||| | |||| |||||||||| |||| ||||||| ||
Sbjct: 4 ctactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgc 63
Query: 75 tcttatattagtttaaggagg 95
||||||||||||||| |||||
Sbjct: 64 tcttatattagtttacggagg 84
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 21 cctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctcttat 80
|||| ||||||||||||||| | ||||||||||||| |||| ||| ||| ||||||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 81 attagtttaaggagggagta 100
|||| |||| |||||||||
Sbjct: 24 attaatttacagagggagta 5
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 95.6 bits (48), Expect = 1e-19
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 21 cctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctcttat 80
||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcactaa-gtagtgatctaaatgctcttat 67
Query: 81 attagtttaaggagggagta 100
||||||||| ||||||||||
Sbjct: 68 attagtttacggagggagta 87
Score = 73.8 bits (37), Expect = 4e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 13 aactactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaat 72
|||||||||||| ||||||||||||||| | ||||||||||| | |||| ||||||||
Sbjct: 90 aactactccctccgtaaactaatataagagcatttagatcact-acttagtgatctaaat 32
Query: 73 gctcttatattagttta 89
||| |||||||||||||
Sbjct: 31 gcttttatattagttta 15
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 93.7 bits (47), Expect = 5e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 19 tccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctctt 78
|||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 79 atattagtttaaggagggagtac 101
||||||||||| ||||||||||
Sbjct: 68 atattagtttacagagggagtac 90
Score = 71.9 bits (36), Expect = 2e-12
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| |||||||||||| |||| ||||||| | |
Sbjct: 89 tactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggt 30
Query: 76 cttatattagtttaaggagggagtactt 103
|||||||||||||| |||||| |||||
Sbjct: 29 cttatattagtttacagagggaatactt 2
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 93.7 bits (47), Expect = 5e-19
Identities = 81/93 (87%), Gaps = 7/93 (7%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagt-------aatct 68
||||||||||||||||||||||||| | ||||||||||||||||||| | |||
Sbjct: 5 tactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaagtct 64
Query: 69 aaatgctcttatattagtttaaggagggagtac 101
||| |||||||||||||||||||||||||||||
Sbjct: 65 aaacgctcttatattagtttaaggagggagtac 97
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 45 tttagatcactaaagtagtaatctaaatgctcttatattagtttaaggagggagtactt 103
|||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttatattagtttacagagggagtactt 2
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgc 74
|||||||||| ||||||||||||||| ||||||||||||||| || | || |||||||
Sbjct: 4 ctactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgc 63
Query: 75 tcttatattagtttaaggagggagta 100
||||||||||||||| |||||||||
Sbjct: 64 tcttatattagtttaccgagggagta 89
Score = 89.7 bits (45), Expect = 7e-18
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 12 aaactactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaa 71
||||||||||||| ||||||||||||||| | |||| |||| |||| |||| |||||||
Sbjct: 93 aaactactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaa 34
Query: 72 tgctcttatattagtttaaggagggagta 100
|||||||||||||||| ||||||||||
Sbjct: 33 cactcttatattagtttacggagggagta 5
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 76 cttatattagtttaaggagggagtac 101
||||||||||||| |||||||||||
Sbjct: 29 tttatattagtttacggagggagtac 4
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| |||||||||||||| | ||||||| |||||| |||| ||||||| | |
Sbjct: 5 tactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgtt 64
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| |||||||||
Sbjct: 65 cttatattagtttacagagggagta 89
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 17 actccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctc 76
|||||||| ||||||||||||||| | ||||||||||||||| |||| ||| ||| |||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 77 ttatattagtttaaggagggagtac 101
|||||||| |||| |||||||||||
Sbjct: 28 ttatattaatttacggagggagtac 4
Score = 79.8 bits (40), Expect = 7e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||||| ||||||||| |||||| |||||||| |||| ||||||| |||
Sbjct: 5 tactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgct 64
Query: 76 cttatattagtttaaggagggagt 99
|||||||||||||| ||||||||
Sbjct: 65 cttatattagtttactgagggagt 88
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||||| |||||||| | ||||||||||||||||||| |||| ||||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| | || ||||||||| |||| |||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 76 cttatattagtttaaggagggagta 100
|||||||| |||| ||||||||||
Sbjct: 65 cttatatttctttacggagggagta 89
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 89.7 bits (45), Expect = 7e-18
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||||||||||||||||||||| || |||| || |||||| |||| ||||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 76 cttatattagtttaaggagggagtacttg 104
|||||||||||||| |||||||||||||
Sbjct: 29 cttatattagtttacagagggagtacttg 1
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaact 64
Query: 76 cttatattagtttaaggagggagta 100
||||||||||||| |||||||||
Sbjct: 65 tttatattagtttacagagggagta 89
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 89.7 bits (45), Expect = 7e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||||||||||||||| ||||||| ||| ||||||| ||||||||||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| ||||||||||
Sbjct: 65 cttatattagtttatggagggagta 89
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| |||||||||||||| | |||||| ||||| ||||||||||||| |
Sbjct: 89 tactccctccataaactaatataagagcatttagaacactacttcagtaatctaaatgtt 30
Query: 76 cttatattagtttaaggagggagta 100
|||||||||||||| ||||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 83.8 bits (42), Expect = 5e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 19 tccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctctt 78
|||||| ||||||||||||||| | ||||||| ||||||||| | ||||||||||| ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 79 atattagtttaaggagggagtacttg 104
||||||||||| ||||||||||||
Sbjct: 68 atattagtttacaaagggagtacttg 93
Score = 67.9 bits (34), Expect = 3e-11
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||||| ||||||||||||||| | ||||||||| || ||||| |||||| |||
Sbjct: 89 tactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgct 30
Query: 76 cttatattagtttaaggaggga 97
|||||||||||||| |||||||
Sbjct: 29 cttatattagtttacggaggga 8
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 83.8 bits (42), Expect = 5e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||||| |||||||| | ||||||| |||||||||||| |||||||||||
Sbjct: 5 tactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgct 64
Query: 76 cttatattagtttaaggagggagtac 101
|||||||| |||| ||||||||||
Sbjct: 65 cttatatttctttatagagggagtac 90
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 83.8 bits (42), Expect = 5e-16
Identities = 79/90 (87%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 13 aactactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaat 72
||||||||||| ||||||||||||| | |||||||||| ||| ||||| ||||||||
Sbjct: 2 aactactcccttcataaactaatataaaagcgtttagatcattaa-gtagtgatctaaat 60
Query: 73 gctcttatattagtttaaggagggagtact 102
||||||||||||||||| |||||||||||
Sbjct: 61 gctcttatattagtttacagagggagtact 90
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||||||||||||| | |||||||||||| || | ||||||| |||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcactact-taatgatctaaacgct 30
Query: 76 cttatattagtttaaggagggagta 100
||||||||||||| | ||||||||
Sbjct: 29 tttatattagtttatgaagggagta 5
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 79.8 bits (40), Expect = 7e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||||||||||||| |||||||| | ||||||||| ||||| |||| ||||||| |||
Sbjct: 5 tactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgct 64
Query: 76 cttatatt 83
||||||||
Sbjct: 65 cttatatt 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 19 tccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctctt 78
|||||| ||||| |||||||| | ||||||||||||| ||| ||||||| || |||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgccctt 27
Query: 79 atattagtttaaggagggagtact 102
||||| ||||| |||||||||||
Sbjct: 26 atatttgtttacagagggagtact 3
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 77.8 bits (39), Expect = 3e-14
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||||||||||||||| | ||||||||| |||| |||| ||||||| |||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 76 cttatattagt 86
|||||||||||
Sbjct: 74 cttatattagt 64
Score = 77.8 bits (39), Expect = 3e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 30 actaatataagtgtgtttagatcactaaagtagtaatctaaatgctcttatattagttta 89
||||||||||| | ||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 90 aggagggagta 100
||||||||||
Sbjct: 124 cggagggagta 134
Score = 61.9 bits (31), Expect = 2e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 34 atataagtgtgtttagatcactaaagtagtaatctaaatgctcttatattagtttaagga 93
|||| ||||||||||||||| |||| | | | ||||| ||||||||||||||||| ||
Sbjct: 71 atattagtgtgtttagatcattaaaattatgacctaaacgctcttatattagtttacaga 12
Query: 94 gggagtacttg 104
|||||||||||
Sbjct: 11 gggagtacttg 1
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttag 49
||||||||||||||||||||||||| | ||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 14 actactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatg 73
|||| ||||| |||||||||||||||| | ||| |||||| |||| | || |||||||
Sbjct: 3 actattccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaact 62
Query: 74 ctcttatattagtttaaggagggagt 99
|||||||||||||||| |||||||||
Sbjct: 63 ctcttatattagtttacggagggagt 88
Score = 58.0 bits (29), Expect = 3e-08
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 17 actccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctc 76
|||||||| ||||||||||||||| | ||||||||||| | || | |||| || ||||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 77 ttatattagttta 89
|||||||||||||
Sbjct: 28 ttatattagttta 16
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/85 (87%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 19 tccctctgtaaactaatataagtgtgtttagatcactaa--agtagtaatctaaatgctc 76
|||||||||||||||||||||| ||||||||||||| |||||| ||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 77 ttatattagtttaaggagggagtac 101
||||||||||||| ||||||||||
Sbjct: 68 ttatattagtttacagagggagtac 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 76/90 (84%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcacta--aagtagtaatctaaatg 73
||||||||||||||||||||||||| |||||||||||| | |||| ||||||| |
Sbjct: 91 tactccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaag 32
Query: 74 ctcttatattagtttaaggagggagtactt 103
||||||||||||||| |||||| |||||
Sbjct: 31 gtcttatattagtttacagagggaatactt 2
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 14 actactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatg 73
|||||| |||||||||| |||||||| | |||||||||||| ||||||| ||||||| |
Sbjct: 3 actactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacg 62
Query: 74 ctcttatatt 83
||||||||||
Sbjct: 63 ctcttatatt 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 20 ccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctctta 79
||||||||||| |||||||| | ||||||||||||| ||| ||||||| |||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 80 tatt 83
||||
Sbjct: 25 tatt 22
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 33 aatataagtgtgtttagatcactaaagtagtaatctaaatgctcttatattagttta 89
|||||||| |||| ||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct: 72 aatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgttta 16
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 22 ctctgtaaactaatataagtgtgtttagatcacta 56
|||||||||| |||||||| | |||||||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcacta 45
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||| |||||||| |||||||| | || ||||||||||||||||| ||||||| ||
Sbjct: 5 tactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacact 64
Query: 76 cttatattagtttaaggagggagta 100
|||||||| |||| ||||||||||
Sbjct: 65 cttatatttctttacggagggagta 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 13 aactactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaat 72
|||||||||||| ||||| |||||||| |||||||||| |||| |||| ||||| |
Sbjct: 92 aactactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagac 33
Query: 73 gctcttatatt 83
|||||||||||
Sbjct: 32 gctcttatatt 22
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||| ||| | |||||||| ||||||||||||||||||||| ||||||||| |
Sbjct: 5 tactccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaatgat 64
Query: 76 cttatattagtttaaggagggagta 100
|||||||| |||| |||||||||
Sbjct: 65 cttatatttctttacagagggagta 89
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 67.9 bits (34), Expect = 3e-11
Identities = 82/97 (84%), Gaps = 7/97 (7%)
Strand = Plus / Plus
Query: 15 ctactccctctgtaaactaatataagtgtgtttagatcactaaagtagt--aatctaaat 72
|||| ||||||||||||||||||||| | |||||||||||||| |||| ||||||||
Sbjct: 4 ctaccccctctgtaaactaatataagagcatttagatcactaaaatagtgagatctaaat 63
Query: 73 -----gctcttatattagtttaaggagggagtacttg 104
||||||||||||||||| |||||||||||||
Sbjct: 64 gaaacgctcttatattagtttacagagggagtacttg 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 60 tagtaatctaaatgctcttatattagttta 89
|||| |||||||||||||||||||||||||
Sbjct: 45 tagtgatctaaatgctcttatattagttta 16
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 42 gtgtttagatcactaaagtagtaatctaaatgctcttatattagtttaaggagggagtac 101
|||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||
Sbjct: 29 gtgtttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagtac 88
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcacta 56
||||||||||||||| |||||||| |||||||||||||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcacta 47
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum (bread
wheat)
Length = 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 26 gtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgctcttatattag 85
|||||| |||||||| | ||| |||||||| ||||||| | ||||| |||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 86 tttaaggagggagta 100
|||| ||||||||||
Sbjct: 19 tttacggagggagta 5
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagta 64
|||||||| |||||| ||||||||| | ||||||||||||| |||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcactagagtagta 44
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgttt 47
||||||||||||||||||||||||| ||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgttt 36
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 60 tagtaatctaaatgctcttatattagtttaaggagggagtac 101
||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 45 tagtaatttaaatgcttttatattagtttacagagggagtac 4
Score = 50.1 bits (25), Expect = 6e-06
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
|||||||||||||||||||||||| | |||| || |||||| || | | ||||| |
Sbjct: 5 tactccctctgtaaactaatataaaagcatttaaattactaaaataatgttttaaataat 64
Query: 76 cttatattagtttaaggagggagta 100
||||||||||||| ||||||||||
Sbjct: 65 tttatattagtttacggagggagta 89
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 73/89 (82%), Gaps = 6/89 (6%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagtaatctaaatgct 75
||||||||||||||| |||||||| | |||||||||| |||| ||||||| |||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgct 58
Query: 76 cttatattagtttaaggagggagtacttg 104
|||||||| |||| |||||||||||||
Sbjct: 59 cttatatttctttacagagggagtacttg 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcacta 56
||||||||||||||| |||||||| | |||||||||||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcacta 43
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 50.1 bits (25), Expect = 6e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataagtgtgtttagatcactaaagtagta 64
||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagta 53
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tactccctctgtaaactaatataag 40
|||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataag 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 73 gctcttatattagtttaaggagggagta 100
||||||||||||||||| ||||||||||
Sbjct: 35 gctcttatattagtttacggagggagta 62
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 15 ctactccctctgtaaactaatataag 40
|||||||||| |||||||||||||||
Sbjct: 63 ctactccctccgtaaactaatataag 38
