miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 121 bits (61), Expect = 2e-27
Identities = 76/81 (93%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgct 30
Query: 66 cttatattaatttatggaggg 86
|||||||||||||| ||||||
Sbjct: 29 cttatattaatttacggaggg 9
Score = 75.8 bits (38), Expect = 9e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| ||||| |||||||||| |||||||||||||| |||| |||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 66 cttata 71
||||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 117 bits (59), Expect = 3e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 4 attactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacg 63
|||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||
Sbjct: 3 attactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacg 62
Query: 64 ctcttatattaatttatggaggg 86
||||||||||| |||| ||||||
Sbjct: 63 ctcttatattagtttacggaggg 85
Score = 85.7 bits (43), Expect = 9e-17
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 5 ttactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgc 64
|||||||||| |||||||||||||||| |||||||||||||| |||| ||||||| ||
Sbjct: 90 ttactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgc 31
Query: 65 tcttatattaattta 79
|||||||||| ||||
Sbjct: 30 tcttatattagttta 16
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacact 30
Query: 66 cttatattaatttatggaggg 86
||||||||| |||| ||||||
Sbjct: 29 cttatattagtttacggaggg 9
Score = 65.9 bits (33), Expect = 9e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 3 tattactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaac 62
|||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||
Sbjct: 2 tattactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaat 61
Query: 63 gctcttatattaattta 79
| | |||||||| ||||
Sbjct: 62 gtttttatattagttta 78
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 113 bits (57), Expect = 4e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 66 cttatatta 74
|||||||||
Sbjct: 65 cttatatta 73
Score = 67.9 bits (34), Expect = 2e-11
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||| ||| ||||||||||||| ||||||||| |||| |||| |||||||||||
Sbjct: 88 tactccct-tgtgaactaatataagagcgtttagatcactactttagtgatctaaacgct 30
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 29 cttatattagttta 16
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 5 ttactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgc 64
|||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||| ||
Sbjct: 4 ttactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgc 63
Query: 65 tcttatattaatttatggaggg 86
|||||||||| |||||||||||
Sbjct: 64 tcttatattagtttatggaggg 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| ||||||||||||||| | |||||| |||| ||||||||||| | |
Sbjct: 89 tactccctccataaactaatataagagcatttagaacactacttcagtaatctaaatgtt 30
Query: 66 cttatattaatttatggaggg 86
||||||||| |||| ||||||
Sbjct: 29 cttatattagtttacggaggg 9
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 3 tattactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaac 62
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct: 92 tattactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaac 33
Query: 63 gctcttatattaatttatggaggg 86
||| |||||||| |||| ||||||
Sbjct: 32 gcttttatattagtttacggaggg 9
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| |||||||||||||| | |||||||| ||||||| |||| ||||||||| |
Sbjct: 5 tactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgtt 64
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 65 cttatattagttta 78
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 99.6 bits (50), Expect = 6e-21
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| || |||||| ||||||||||| |||||| ||||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 29 cttatattagttta 16
Score = 75.8 bits (38), Expect = 9e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| || |||||| |||| |||| |||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 65 cttatattagttta 78
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 99.6 bits (50), Expect = 6e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 66 cttatattaattta 79
|||||||| ||||
Sbjct: 65 tttatattagttta 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||| |||||||||||||||| | | |||||| |||| ||||||||||||||||
Sbjct: 89 tactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgct 30
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 29 cttatattagttta 16
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 99.6 bits (50), Expect = 6e-21
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| |||||||||||||||| |||||||| ||||||| |||| |||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 29 cttatattagttta 16
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgct 64
Query: 66 cttatattaatttatggaggg 86
||||||||| |||| ||||||
Sbjct: 65 cttatattagtttacggaggg 85
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctc 66
|||||||| |||||||||||||||| ||||||||| |||||| |||| ||| |||| |||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 67 ttatattaatttatggaggg 86
||||||||||||| ||||||
Sbjct: 28 ttatattaatttacggaggg 9
Score = 60.0 bits (30), Expect = 5e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| ||||| |||||||||| |||| ||| |||| |||| |||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgct 64
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 65 cttatattagttta 78
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||||||||| |||||||||| ||||| ||| |||||| |||| |||||||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 66 cttatattaatttatggagg 85
||||||||| |||| |||||
Sbjct: 65 cttatattagtttacggagg 84
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 11 cctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctcttat 70
|||| |||||||||||||||| ||||||||| |||| |||| ||| ||||||||||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 71 attaattta 79
|||||||||
Sbjct: 24 attaattta 16
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 85.7 bits (43), Expect = 9e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctctt 68
||||||||||||||||||||||| | ||||||| ||||||||||| ||||||| | ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 69 atattaattta 79
|||||| ||||
Sbjct: 68 atattagttta 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| | ||||||| |||| |||| ||||||| | |
Sbjct: 89 tactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggt 30
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 29 cttatattagttta 16
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| |||||||||||||||| ||||||| | |||||| |||| ||||||| |||
Sbjct: 5 tactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgct 64
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 65 cttatattagttta 78
Score = 73.8 bits (37), Expect = 4e-13
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||| ||||||||||||||||||||| | ||||||| |||| |||| | |||||||||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 66 cttatattaatttatggaggg 86
||||||||| |||| ||||||
Sbjct: 29 cttatattagtttacggaggg 9
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaacgct 62
Query: 66 cttatattaatttatggaggg 86
|||||||| |||| ||||||
Sbjct: 63 attatattagtttacggaggg 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 63/74 (85%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| |||||||||||||| | |||||||| |||| |||| |||||||| ||
Sbjct: 87 tactccctccgtaaactaatataatagcgtttaga--actattttagttatctaaacact 30
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 29 cttatattagttta 16
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgct 64
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 65 cttatattagttta 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 16 gtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctcttatattaa 75
|||||||||||||||| | |||||| |||| |||||||||||| |||||||||||
Sbjct: 79 gtaaactaatataagagcatttagaacactattttagtaatctaaatactcttatattag 20
Query: 76 ttta 79
||||
Sbjct: 19 ttta 16
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||| | |||||||| |||||| |||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacgct 62
Query: 66 cttatattaatttatggaggg 86
||||||||| |||| ||||||
Sbjct: 63 cttatattagtttacggaggg 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttaga 40
||||||||| |||||||||||||||| ||||||||
Sbjct: 87 tactccctccgtaaactaatataagagcgtttaga 53
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||| ||||| ||||||||| |||||||| |||||| |||| ||||||||||
Sbjct: 5 tactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgct 64
Query: 66 cttatattaatttatggaggg 86
||||||||| |||| ||||||
Sbjct: 65 cttatattagtttacggaggg 85
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| |||||||||||||||| |||||||| |||| |||| |||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 66 cttatattaatttatggaggg 86
|||||||| ||||| |||||
Sbjct: 29 cttatattggtttatagaggg 9
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||| | | ||||||| |||| || ||||||||| |||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 66 cttatattaatttatggaggg 86
||||||||| |||||||||||
Sbjct: 65 cttatattagtttatggaggg 85
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| ||||||||||||||| | ||||||||| |||| |||| ||||||| |||
Sbjct: 89 tactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgct 30
Query: 66 cttatattaattta 79
|||||||| ||||
Sbjct: 29 tttatattagttta 16
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| |||||||||||||||| | ||||||| | |||| |||| |||||||||||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 66 cttatatta 74
|||||||||
Sbjct: 74 cttatatta 66
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttag 39
|||||||||||||||||||||||||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttag 38
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 20 actaatataagaacgtttagattactaaagtagtaatctaaacgctcttatattaattta 79
|||||||||||| ||||||||| |||| || | ||||||| |||||||||||| ||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 80 tggaggg 86
||||||
Sbjct: 124 cggaggg 130
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 79.8 bits (40), Expect = 6e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaa 61
|||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttaga 40
||||||||| ||||||||||||||| ||||||||
Sbjct: 96 tactccctccttaaactaatataagagcgtttaga 62
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||| |||||||||| ||||||||| ||||||||| ||| ||||||| |||||||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
Score = 56.0 bits (28), Expect = 8e-08
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 10 ccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctctta 69
||||||||||| ||||||||| ||||||||| |||| ||| |||||||||||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 70 tatt 73
||||
Sbjct: 25 tatt 22
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||| |||||||| ||||||||| ||||| |||| |||||||||||
Sbjct: 5 tactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctctt 68
|||||| |||||||||||||||| |||||||| |||||||||| | ||||||| ||| ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 69 atattaattta 79
|||||| ||||
Sbjct: 68 atattagttta 78
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||| ||||||||||||||| | | ||||||| | || ||||| ||||||||||
Sbjct: 89 tactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgct 30
Query: 66 cttatattaatttatggaggg 86
||||||||| |||| ||||||
Sbjct: 29 cttatattagtttacggaggg 9
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||| | |||| ||||||||| |||| |||||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 29 cttatattagttta 16
Score = 60.0 bits (30), Expect = 5e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| |||||||| |||| ||||||| |||| ||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaact 64
Query: 66 cttatattaattta 79
|||||||| ||||
Sbjct: 65 tttatattagttta 78
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 3 tattactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaac 62
|||||||||||| ||||| ||||||||| | ||||||| ||||||||||| |||| ||
Sbjct: 92 tattactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaat 33
Query: 63 gctcttatattaattta 79
|||||||||||| ||||
Sbjct: 32 gctcttatattagttta 16
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| | || |||| |||| |||| ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 66 cttatattaatttatggaggg 86
|||||||| |||| ||||||
Sbjct: 65 cttatatttctttacggaggg 85
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| |||||||||||||||| | |||| || | |||| |||| |||||||| ||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 66 cttatattaatttatggaggg 86
||||||||| |||| ||||||
Sbjct: 29 cttatattagtttacggaggg 9
Score = 52.0 bits (26), Expect = 1e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| |||||||||||||||| |||||||| |||| || | || |||| |||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgct 64
Query: 66 cttatattaattta 79
||||||||| ||||
Sbjct: 65 cttatattagttta 78
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| ||||| ||||||||| |||||||| ||||||||||| ||||||| |||
Sbjct: 5 tactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgct 64
Query: 66 cttatattaatttatggaggg 86
|||||||| ||||| |||||
Sbjct: 65 cttatatttctttatagaggg 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||| |||| ||||||||| | ||||||| |||| |||| ||||||||||
Sbjct: 89 tactccctctataaagaaatataagagcatttagataactactttagtgctctaaacgct 30
Query: 66 cttatatt 73
||||||||
Sbjct: 29 cttatatt 22
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||| |||||||| ||||||||| ||| ||||| ||||||||||| |||||||| ||
Sbjct: 5 tactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacact 64
Query: 66 cttatattaatttatggaggg 86
|||||||| |||| ||||||
Sbjct: 65 cttatatttctttacggaggg 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| ||||| ||||||||| |||||||| |||| |||| ||||| |||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgct 30
Query: 66 cttatatt 73
||||||||
Sbjct: 29 cttatatt 22
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 11 cctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctcttat 70
||||||||||||||||||| | | ||||||| ||||| ||||| ||||||| ||||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcactaa-gtagtgatctaaatgctcttat 67
Query: 71 attaatttatggaggg 86
|||| |||| ||||||
Sbjct: 68 attagtttacggaggg 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| |||||||||||||||| | ||||||| ||| | |||| ||||||| |||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcact-acttagtgatctaaatgct 29
Query: 66 cttatattaattta 79
|||||||| ||||
Sbjct: 28 tttatattagttta 15
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 67.9 bits (34), Expect = 2e-11
Identities = 63/72 (87%), Gaps = 3/72 (4%)
Strand = Plus / Minus
Query: 5 ttactccctctgtaaactaatataagaacgtttagattactaaagtagta---atctaaa 61
||||||||| |||||| |||||||||| ||||||||| |||| ||||||| |||||||
Sbjct: 93 ttactccctatgtaaaataatataagagcgtttagatcactagagtagtagtgatctaaa 34
Query: 62 cgctcttatatt 73
|||||| |||||
Sbjct: 33 cgctctcatatt 22
Score = 46.1 bits (23), Expect = 8e-05
Identities = 64/77 (83%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagat---tactaaagtagtaatctaaac 62
|||||||||||| || ||||| ||| ||||||||| ||||| |||| ||||||||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcactactactctagtgatctaaac 64
Query: 63 gctcttatattaattta 79
|||||||||||| ||||
Sbjct: 65 gctcttatattatttta 81
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctctt 68
||||| ||||||||||||||||| |||| |||| | |||| | || |||||||| |||||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctctt 67
Query: 69 atattaatttatggaggg 86
|||||| |||| ||||||
Sbjct: 68 atattagtttacggaggg 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctc 66
|||||||| |||||||||||||||| |||||||| || | || | |||| |||||||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 67 ttatattaattta 79
|||||||| ||||
Sbjct: 28 ttatattagttta 16
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/73 (87%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataagaacgtttagattactaa--agtagtaatctaaacgctc 66
||||||||||||||||||||||| | ||||||| ||||| |||||| ||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 67 ttatattaattta 79
|||||||| ||||
Sbjct: 68 ttatattagttta 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattacta 46
|||||||||||||||||||||||||| | ||||||| ||||
Sbjct: 91 tactccctctgtaaactaatataagaccttttagatcacta 51
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 65.9 bits (33), Expect = 9e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
|||||||||||||||||||||||||| | ||||||| |||| || | |||||||||||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcactact-taatgatctaaacgct 30
Query: 66 cttatattaatttatggaggg 86
|||||||| |||||| ||||
Sbjct: 29 tttatattagtttatgaaggg 9
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 17 taaactaatataagaacgtttagattactaaagtagtaatctaaacgctcttatattaat 76
||||||||||||| | ||||||||| | ||| ||||| ||||||| |||||||||||| |
Sbjct: 16 taaactaatataaaagcgtttagatcattaa-gtagtgatctaaatgctcttatattagt 74
Query: 77 tta 79
|||
Sbjct: 75 tta 77
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||| ||| | |||||||||| |||||||| ||||||||||| ||||||| | |
Sbjct: 5 tactccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaatgat 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 4 attactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacg 63
||||||||||||||||| ||||||||| | ||||||| |||| |||| ||||||||
Sbjct: 91 attactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaaca 32
Query: 64 ctcttatatt 73
|||||||||
Sbjct: 31 ttcttatatt 22
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 16 gtaaactaatataagaacgtttagattactaaagtagtaatctaaacgctcttatattaa 75
|||||| ||||||||| |||| |||| ||| ||||||| | |||||||||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 76 tttatggaggg 86
|||| ||||||
Sbjct: 19 tttacggaggg 9
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 23 aatataagaacgtttagattactaaagtagtaatctaaacgctcttatatt 73
||||||||| || ||||| ||||||||||| |||||||||||||||||||
Sbjct: 72 aatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatt 22
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagta 54
||||||||||||||| ||||||||| ||||||||| |||||| |||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagta 53
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 56.0 bits (28), Expect = 8e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 10 ccctctgtaaactaatataagaacgtttagattactaaagtagt 53
|||||||||||||||||||||| | ||||||| |||||| ||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcactaaaatagt 52
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgttt 37
|||||||||||||||||||||||||| |||||
Sbjct: 96 tactccctctgtaaactaatataagagcgttt 65
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 attactccctctgtaaactaatataaga 31
||||||||||||||||||||||||||||
Sbjct: 3 attactccctctgtaaactaatataaga 30
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaga 31
||||||||| ||||||||||||||||
Sbjct: 74 tactccctcggtaaactaatataaga 49
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 34 gtttagattactaaagtagtaatctaaacgctcttatatt 73
|||||||| ||||||||||| |||||||| ||||||||||
Sbjct: 31 gtttagatcactaaagtagtgatctaaacactcttatatt 70
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaa 48
|||||||||||||||||||||||| | | |||| |||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttaaattactaaa 47
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 4 attactccctctgtaaactaatataa 29
||||||||||| ||||||||||||||
Sbjct: 91 attactccctccgtaaactaatataa 66
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaga 31
||||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataaga 30
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaga 31
||||||||| ||||||||||||||||
Sbjct: 62 tactccctccgtaaactaatataaga 37
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 57/68 (83%), Gaps = 6/68 (8%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataagaacgtttagattactaaagtagtaatctaaacgct 65
||||||||||||||| ||||||||| ||||||||| | |||| |||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgct 58
Query: 66 cttatatt 73
||||||||
Sbjct: 59 cttatatt 66
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataagaacgtttagattacta 46
||||||||||||||| ||||||||| ||||||||| ||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcacta 43
