miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 143 bits (72), Expect = 5e-34
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 8 tccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgttctt 67
Query: 69 atattagtttacagagggagtaat 92
||||||||||||||||||||||||
Sbjct: 68 atattagtttacagagggagtaat 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| | |||||||| |||| |||| |||||| ||| ||
Sbjct: 86 tccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgctttt 27
Query: 69 atattagtttacagagggagta 90
|||||||||||| |||||||||
Sbjct: 26 atattagtttacggagggagta 5
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 139 bits (70), Expect = 7e-33
Identities = 79/82 (96%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgctctt 27
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| |||||||||| |||| |||| |||||| ||||||
Sbjct: 8 tccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgctctt 67
Query: 69 atattagtttacagagggagta 90
|||||||||||| |||||||||
Sbjct: 68 atattagtttacggagggagta 89
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 121 bits (61), Expect = 2e-27
Identities = 79/85 (92%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgctctt 27
Query: 69 atattagtttacagagggagtaatt 93
|||||||||||||||||||||||||
Sbjct: 26 atattagtttacagagggagtaatt 2
Score = 109 bits (55), Expect = 6e-24
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| ||| |||||| ||||||||||| ||||||| ||||||
Sbjct: 8 tccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgctctt 67
Query: 69 atattagtttacagagggagtaa 91
|||||||||||| ||||||||||
Sbjct: 68 atattagtttacggagggagtaa 90
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| |||||||||||||||||| || ||||||||||||| ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 69 atattagtttacagagggagta 90
||||||||||||| ||||||||
Sbjct: 68 atattagtttacaaagggagta 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||| ||||||||||||||||||| |||||| | || |||| |||||| ||||||
Sbjct: 86 tccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgctctt 27
Query: 69 atattagtttacagaggga 87
|||||||||||| ||||||
Sbjct: 26 atattagtttacggaggga 8
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 8 tccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgctctt 67
Query: 69 atattagtttacagagggagta 90
||||||||||||||||| ||||
Sbjct: 68 atattagtttacagaggaagta 89
Score = 79.8 bits (40), Expect = 6e-15
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 11 cctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttat 70
||||||||||||||||||| ||| |||||| |||| |||||| ||||| ||||||||
Sbjct: 84 cctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgctcttat 25
Query: 71 attagtttacagagggagta 90
|||||||||| |||||||||
Sbjct: 24 attagtttacggagggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||| ||
Sbjct: 8 tccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgctttt 67
Query: 69 atattagtttacagagggagta 90
|||||||||||||| |||||||
Sbjct: 68 atattagtttacagggggagta 89
Score = 99.6 bits (50), Expect = 6e-21
Identities = 74/82 (90%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||| |||||||||||||||||||| ||||||| |||| |||| ||||||| ||||||
Sbjct: 86 tccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgctctt 27
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 75/82 (91%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| |||| ||||| |||||| ||||||||||| ||||||
Sbjct: 86 tccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgctctt 27
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
Score = 91.7 bits (46), Expect = 2e-18
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| |||| ||||| |||| ||||||||||| ||||||
Sbjct: 8 tccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgctctt 67
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 75/82 (91%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||||||||||||||||||||| |||| | ||||||| |||||||||||| |||||
Sbjct: 86 tccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacactctt 27
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| || ||||||| |||| |||| || |||| || ||
Sbjct: 8 tccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaactttt 67
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 17 taaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttatattagt 76
||||||||||||| ||| |||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 78 taaactaatataagagcatttagattattaaaatagtgatctaaatgcttttatattagt 19
Query: 77 ttacagagggagta 90
||||||||||||||
Sbjct: 18 ttacagagggagta 5
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||||||| |||||| |||| || | ||||||||||||||
Sbjct: 8 tccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgctctt 67
Query: 69 atattagtttacagagggagta 90
||||||||||| |||||||||
Sbjct: 68 atattagtttatggagggagta 89
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| || |||||| ||||||||||||| |||||||||||||
Sbjct: 8 tccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgctctt 67
Query: 69 atattagtttac 80
||||||||||||
Sbjct: 68 atattagtttac 79
Score = 85.7 bits (43), Expect = 9e-17
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 16 gtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttatattag 75
|||||||||||||| ||| ||||||| |||| |||| |||||||| ||||||||||||
Sbjct: 79 gtaaactaatataagagcatttagaacactattttagtaatctaaatactcttatattag 20
Query: 76 tttacagagggagta 90
|||||||||||||||
Sbjct: 19 tttacagagggagta 5
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 103 bits (52), Expect = 4e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 cctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttat 70
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcactaag-tagtgatctaaatgctcttat 67
Query: 71 attagtttacagagggagta 90
|||||||||| |||||||||
Sbjct: 68 attagtttacggagggagta 87
Score = 73.8 bits (37), Expect = 4e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| ||| |||||| |||| |||||||||||||||| ||
Sbjct: 84 tccctccgtaaactaatataagagcatttagatcactact-tagtgatctaaatgctttt 26
Query: 69 atattagtttacagagg 85
|||||||||||||||||
Sbjct: 25 atattagtttacagagg 9
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 101 bits (51), Expect = 2e-21
Identities = 75/82 (91%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||||||
Sbjct: 8 tccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacgctctt 65
Query: 69 atattagtttacagagggagta 90
|||||||||||| |||||||||
Sbjct: 66 atattagtttacggagggagta 87
Score = 69.9 bits (35), Expect = 6e-12
Identities = 71/82 (86%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| ||||||||||| ||| |||| ||||||| || ||
Sbjct: 84 tccctccgtaaactaatataagagcgtttagaa--ctattttagttatctaaacactttt 27
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 99.6 bits (50), Expect = 6e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| | | |||||| |||||| |||||||||||| | ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 68 atattagtttacagagggagta 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| | | |||||| |||| |||||||||||| | ||||
Sbjct: 86 tccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggtctt 27
Query: 69 atattagtttacagaggga 87
|||||||||||||||||||
Sbjct: 26 atattagtttacagaggga 8
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 99.6 bits (50), Expect = 6e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 17 taaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttatattagt 76
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 16 taaactaatataaaagcgtttagatcattaag-tagtgatctaaatgctcttatattagt 74
Query: 77 ttacagagggagta 90
||||||||||||||
Sbjct: 75 ttacagagggagta 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| ||| |||||| ||| | || ||||||||| ||| ||
Sbjct: 85 tccctctgtaaactaatataagagcatttagatcact-acttaatgatctaaacgctttt 27
Query: 69 atattagttta 79
|||||||||||
Sbjct: 26 atattagttta 16
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 99.6 bits (50), Expect = 6e-21
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| |||||||||| |||||| |||||||||||| ||||||
Sbjct: 8 tccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgctctt 67
Query: 69 atattagtttacagagggagta 90
||||||||| ||| ||||||||
Sbjct: 68 atattagttcaca-agggagta 88
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 19 aactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttatattagttt 78
||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct: 76 aactaatataagagcgtttagatcactactttagtgatctaaacgctcttatattagttt 17
Query: 79 acagagggagta 90
||||||||||||
Sbjct: 16 acagagggagta 5
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||||||||| |||||||| ||||||| || ||||||||||||||||||| ||||||
Sbjct: 8 tccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgctctt 67
Query: 69 atattagtttacagagg 85
|||||||||||| ||||
Sbjct: 68 atattagtttacggagg 84
Score = 79.8 bits (40), Expect = 6e-15
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 11 cctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttat 70
|||| |||||||||||||| |||||||||| |||| |||||||| ||| ||||||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 71 attagtttacagagggagta 90
|||| |||||||||||||||
Sbjct: 24 attaatttacagagggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||||| | |||||| |||||| |||| ||||||| |||||
Sbjct: 86 tccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacactctt 27
Query: 69 atattagtttacagagggagtaat 92
|||||||||||| |||||||||||
Sbjct: 26 atattagtttacggagggagtaat 3
Score = 91.7 bits (46), Expect = 2e-18
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| || ||||||| ||||| |||||||||||||| | ||
Sbjct: 8 tccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgttttt 67
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| |||||||||| ||||||||||||||| ||| |||||
Sbjct: 86 tccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactctt 27
Query: 69 atattagtttacagagggagta 90
|||||| ||||| |||||||||
Sbjct: 26 atattaatttacggagggagta 5
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| ||||| |||||||| || |||| || |||| |||||||||||| ||||||
Sbjct: 8 tccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgctctt 67
Query: 69 atattagtttacagagggagt 89
|||||||||||| ||||||||
Sbjct: 68 atattagtttactgagggagt 88
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| ||||| ||||||| ||| |||||| |||||| ||||||||| |||||||||
Sbjct: 86 tccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgctctt 27
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
Score = 79.8 bits (40), Expect = 6e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| ||| || ||| |||| |||||||||||||||||||
Sbjct: 8 tccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgctctt 67
Query: 69 atattagtttacagagggagtaat 92
||||| ||||| |||||||||||
Sbjct: 68 atatttctttacggagggagtaat 91
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||| ||||| ||||||| || ||||||| |||||||||||| |||||| ||||||
Sbjct: 8 tccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgctctt 67
Query: 69 atattagtttacagagggagta 90
|||||||||||| |||||||||
Sbjct: 68 atattagtttacggagggagta 89
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| ||||||||||| |||| |||||||||||| |||||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacactctt 27
Query: 69 atattagtttacagagggagta 90
||||| ||||| ||||||||||
Sbjct: 26 atattggtttatagagggagta 5
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||||||| |||| | |||||||||| || | ||||| | ||
Sbjct: 8 tccctctgtaaactaatataaaagcatttaaattactaaaataatgttttaaataatttt 67
Query: 69 atattagtttacagagggagtaatt 93
|||||||||||| ||||||||||||
Sbjct: 68 atattagtttacggagggagtaatt 92
Score = 60.0 bits (30), Expect = 5e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||||| |||| || | || |||| || |||||||| ||
Sbjct: 86 tccctccgtaaactaatataaaattatttaaaacattattttagtaatttaaatgctttt 27
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 85.7 bits (43), Expect = 9e-17
Identities = 73/82 (89%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||||||||||| || ||||||| ||||||||||| |||||| ||| ||
Sbjct: 8 tccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaacgctatt 65
Query: 69 atattagtttacagagggagta 90
|||||||||||| |||||||||
Sbjct: 66 atattagtttacggagggagta 87
Score = 77.8 bits (39), Expect = 2e-14
Identities = 72/82 (87%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| ||||||||||| ||| |||| ||||||| |||||
Sbjct: 84 tccctccgtaaactaatataatagcgtttagaa--ctattttagttatctaaacactctt 27
Query: 69 atattagtttacagagggagta 90
||||||||||||||||||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| ||| |||| | | ||||||||||||||||| |||||
Sbjct: 86 tccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacactctt 27
Query: 69 atattagtttacagagggagta 90
|||||||||||| |||||||||
Sbjct: 26 atattagtttacggagggagta 5
Score = 75.8 bits (38), Expect = 9e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| || ||||||| |||| || |||| |||||||||||
Sbjct: 8 tccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgctctt 67
Query: 69 atattagtttacagagggagta 90
|||||||||||| |||||||||
Sbjct: 68 atattagtttaccgagggagta 89
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| | | |||||| |||| || ||||| |||||||||||||
Sbjct: 8 tccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgctctt 67
Query: 69 atattagtttacagagggagta 90
||||||||||| |||||||||
Sbjct: 68 atattagtttatggagggagta 89
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 17 taaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttatattagt 76
||||||||||||| ||| ||||||| |||| ||| ||||||||| ||||||||||||
Sbjct: 78 taaactaatataagagcatttagaacactacttcagtaatctaaatgttcttatattagt 19
Query: 77 ttacagagggagtaa 91
|||| ||||||||||
Sbjct: 18 ttacggagggagtaa 4
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 13 tctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttatat 72
||||||||||| ||||| |||||||||| |||||| |||| ||||||| ||||||||||
Sbjct: 82 tctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgctcttatat 23
Query: 73 tagtttacagagggagta 90
|| ||||| |||||||||
Sbjct: 22 taatttacggagggagta 5
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| ||||| |||||||| |||||||||| ||||| |||||||||||| ||||||
Sbjct: 8 tccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgctctt 67
Query: 69 atattagtttacagagggagta 90
||| ||||||||||| ||||||
Sbjct: 68 atagtagtttacagacggagta 89
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 81.8 bits (41), Expect = 1e-15
Identities = 77/88 (87%), Gaps = 7/88 (7%)
Strand = Plus / Plus
Query: 10 ccctctgtaaactaatataaaagcgtttagaatactaaaatagtga--tctaaatg---- 63
|||||||||||||||||||| ||| |||||| ||||||||||||| ||||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcactaaaatagtgagatctaaatgaaac 68
Query: 64 -ctcttatattagtttacagagggagta 90
|||||||||||||||||||||||||||
Sbjct: 69 gctcttatattagtttacagagggagta 96
Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 50 tagtgatctaaatgctcttatattagtttacagaggg 86
|||||||||||||||||||||||||||||||||||||
Sbjct: 45 tagtgatctaaatgctcttatattagtttacagaggg 9
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||| ||||||||||||||| |||||| ||| | |||||| |||||||||| |||||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctctt 67
Query: 69 atattagtttacagagggagt 89
|||||||||||| ||||||||
Sbjct: 68 atattagtttacggagggagt 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| || ||||||| || | || |||||| || ||||||
Sbjct: 86 tccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctctt 27
Query: 69 atattagtttacagaggga 87
||||||||||||| |||||
Sbjct: 26 atattagtttacaaaggga 8
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 81.8 bits (41), Expect = 1e-15
Identities = 74/84 (88%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaa--aatagtgatctaaatgctc 66
||||||||||||||||||||| | | |||||| ||||| | |||||||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 67 ttatattagtttacagagggagta 90
||||||||||||||||||||||||
Sbjct: 68 ttatattagtttacagagggagta 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaa--tagtgatctaaatgctc 66
||||||||||||||||||||| | | |||||| |||| | |||||||||||| | ||
Sbjct: 88 tccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaaggtc 29
Query: 67 ttatattagtttacagaggga 87
|||||||||||||||||||||
Sbjct: 28 ttatattagtttacagaggga 8
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| |||||||||||||| ||| |||||| | ||||||||||||||||| ||||||
Sbjct: 131 tccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgctctt 72
Query: 69 atattagt 76
||||||||
Sbjct: 71 atattagt 64
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 20 actaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttatattagttta 79
|||||||||| |||||||||| |||| || |||||||||||||||||||||||||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 80 cagagggagta 90
| |||||||||
Sbjct: 124 cggagggagta 134
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 57 ctaaatgctcttatattagtttacagagggagta 90
||||| ||||||||||||||||||||||||||||
Sbjct: 38 ctaaacgctcttatattagtttacagagggagta 5
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttag 39
||||||||||||||||||||| |||||||||
Sbjct: 8 tccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||
Sbjct: 8 tccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgctctt 67
Query: 69 atattagtttacagaggga 87
||||| ||||| ||||||
Sbjct: 68 atatttctttactgaggga 86
Score = 60.0 bits (30), Expect = 5e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| ||||| ||||||| |||||||||| |||| ||| |||||||| || |||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgccctt 27
Query: 69 atattagtttacagagggagta 90
||||| ||||||||||||||||
Sbjct: 26 atatttgtttacagagggagta 5
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| ||||| ||||||| |||||||||| |||||| |||| ||||||||||||||
Sbjct: 8 tccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgctctt 67
Query: 69 atattagtttacagagggagta 90
||||| |||| ||||||||||
Sbjct: 68 atatttctttatagagggagta 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
||||||| |||| ||||||| ||| |||||| |||| ||||| |||||| ||||||
Sbjct: 86 tccctctataaagaaatataagagcatttagataactactttagtgctctaaacgctctt 27
Query: 69 atattagtttacagagggagta 90
||||| ||||| |||||||||
Sbjct: 26 atatttctttaccgagggagta 5
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 50 tagtgatctaaatgctcttatattagtttacagagggagta 90
|||||||||||| ||||||||||||||||||||||||||||
Sbjct: 45 tagtgatctaaaagctcttatattagtttacagagggagta 5
Score = 65.9 bits (33), Expect = 9e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaa 61
||||||||||||||||||||| ||| |||||| |||||| ||||||||||||
Sbjct: 8 tccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 11 cctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttat 70
|||||||||| ||||||| |||||||||| ||| || |||||||||||| ||||||||
Sbjct: 10 cctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgctcttat 69
Query: 71 attagtttacagaggg 86
||| |||||||||||
Sbjct: 70 atttctttacagaggg 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 10 ccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctta 69
||||||||||| ||||||| |||||||||| |||| ||||||||||| |||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 70 tattagtttacagagggagta 90
|||| |||||||||| ||||
Sbjct: 25 tatttctttacagaggtagta 5
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 34 gtttagaatactaaaatagtgatctaaatgctcttatattagtttacagagggagtaatt 93
||||||| |||||| |||| ||||||||| ||||||||| ||||||||||||||||||
Sbjct: 33 gtttagatcactaaagtagttatctaaatgatcttatatttctttacagagggagtaatt 92
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 60.0 bits (30), Expect = 5e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 50 tagtgatctaaatgctcttatattagtttacagagggagtaa 91
|||||||||||| |||||||||||| |||||| |||||||||
Sbjct: 52 tagtgatctaaacgctcttatattattttacatagggagtaa 93
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 60.0 bits (30), Expect = 5e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 43 actaaaatagtgatctaaatgctcttatattagtttacagag 84
|||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 52 actaaagtagtgatctaaacgctcttatatttgtttacagag 11
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 64 ctcttatattagtttacagagggagtaatt 93
||||||||||||||||||||||||||||||
Sbjct: 31 ctcttatattagtttacagagggagtaatt 2
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 gctcttatattagtttacagagggagta 90
|||||||||||||||||| |||||||||
Sbjct: 47 gctcttatattagtttaccgagggagta 74
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 60.0 bits (30), Expect = 5e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 49 atagtgatctaaatgctcttatattagtttacagagggagta 90
||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 42 atagtgatctaaacgctcttatatttctttacagagggagta 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 68/82 (82%), Gaps = 6/82 (7%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||||||||| ||||||| |||||||||| |||| ||||||||| ||||||
Sbjct: 80 tccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgctctt 27
Query: 69 atattagtttacagagggagta 90
||||| |||||||||||||||
Sbjct: 26 atatttctttacagagggagta 5
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 62 tgctcttatattagtttacagagggagta 90
|||||||||||||||||||||||||||||
Sbjct: 33 tgctcttatattagtttacagagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 gctcttatattagtttacagagggagta 90
|||||||||||||||||| |||||||||
Sbjct: 35 gctcttatattagtttacggagggagta 62
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 34 gtttagaatactaaaatagtgatctaaatgctcttatattagtttacagagggagta 90
||||||| |||||| |||||||||||| |||||||||| |||||||||||||||
Sbjct: 31 gtttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagta 87
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 49 atagtgatctaaatgctcttatattagtttacagagggag 88
||||||||||||||| ||||||||| |||||||||||||
Sbjct: 37 atagtgatctaaatgatcttatatttctttacagagggag 76
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 16 gtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctcttatattag 75
|||||| ||||||| |||||| ||| ||| || |||||| ||||| |||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 76 tttacagagggagta 90
||||| |||||||||
Sbjct: 19 tttacggagggagta 5
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 50 tagtgatctaaatgctcttatattagtttacagagggagta 90
|||||||||||| | ||||||||| |||||||||||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaatgctctt 68
|||||| ||||| ||||||| || ||||||| |||| |||||||||| | ||||||
Sbjct: 86 tccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgctctt 27
Query: 69 atattagtttacagagggagta 90
||||| |||||||| ||||||
Sbjct: 26 atatttctttacagaaggagta 5
