miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 caagtactccttctgtaaactaatataagagt 43
|||||||||| |||||||||||||||||||||
Sbjct: 1 caagtactccctctgtaaactaatataagagt 32
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
||||||| ||||||||||||||||||
Sbjct: 39 tctaaacactcttatattagtttaca 14
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttacaaggcagtact 78
|||||||||||||||||||||| |||||| ||||||
Sbjct: 55 tctaaacgctcttatattagttcacaagggagtact 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
||||||||||||||||||||||||||
Sbjct: 39 tctaaacgctcttatattagtttaca 14
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccttctgtaaactaatataagag 42
|||||| ||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 caagtactccttctgtaaactaatataagag 42
|||||||||| ||||||||||||||||||||
Sbjct: 100 caagtactccctctgtaaactaatataagag 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 aaacgctcttatattagtttaca 68
|||||||||||||||||||||||
Sbjct: 65 aaacgctcttatattagtttaca 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
|||||| |||||||||||||||||||
Sbjct: 39 tctaaatgctcttatattagtttaca 14
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 54.0 bits (27), Expect = 3e-07
Identities = 46/52 (88%), Gaps = 4/52 (7%)
Strand = Plus / Plus
Query: 16 tactccttctgtaaactaatataagagtctaaacgctcttatattagtttac 67
|||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag----cacgctcttatattagtttac 52
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 caagtactccttctgtaaactaatataagag 42
|||||||||| ||||||||||||||||||||
Sbjct: 1 caagtactccctctgtaaactaatataagag 31
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 44 ctaaacgctcttatattagtttaca 68
|||||||||||||||||||||||||
Sbjct: 38 ctaaacgctcttatattagtttaca 14
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 agtactccttctgtaaactaatataagagt 43
|||||||| |||||||||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagt 32
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
||||||| ||||||||||||||||||
Sbjct: 39 tctaaacactcttatattagtttaca 14
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 aagtactccttctgtaaactaatataagag 42
||||||||| ||||||||||||||||||||
Sbjct: 2 aagtactccctctgtaaactaatataagag 31
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 agtctaaacgctcttatattagttta 66
||||||||||||||||||||||||||
Sbjct: 60 agtctaaacgctcttatattagttta 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
|||||| |||||||||||||||||||
Sbjct: 39 tctaaaagctcttatattagtttaca 14
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
||||||||||||||||||||||||||
Sbjct: 39 tctaaacgctcttatattagtttaca 14
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccttctgtaaactaatataagag 42
|||||| ||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
||||||||||||||||||||||||||
Sbjct: 39 tctaaacgctcttatattagtttaca 14
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 agtactccttctgtaaactaatataagag 42
|||||||| ||||||||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagag 31
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttac 67
|||||||||||||||||||||||||
Sbjct: 55 tctaaacgctcttatattagtttac 79
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttac 67
|||||||||||||||||||||||||
Sbjct: 55 tctaaacgctcttatattagtttac 79
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttac 67
|||||||||||||||||||||||||
Sbjct: 39 tctaaacgctcttatattagtttac 15
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttac 67
|||||||||||||||||||||||||
Sbjct: 55 tctaaacgctcttatattagtttac 79
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttac 67
|||||||||||||||||||||||||
Sbjct: 55 tctaaacgctcttatattagtttac 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccttctgtaaactaatataagag 42
|||||| ||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
|||||| |||||||||||||||||||
Sbjct: 39 tctaaatgctcttatattagtttaca 14
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 15 gtactccttctgtaaactaatataagagt 43
||||||| |||||||||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagt 32
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 14 agtactccttctgtaaactaatataagag 42
|||||||| ||||||||||||||||||||
Sbjct: 90 agtactccctctgtaaactaatataagag 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttaca 68
|||||| |||||||||||||||||||
Sbjct: 54 tctaaatgctcttatattagtttaca 79
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttac 67
|||||||||||||||||||||||||
Sbjct: 55 tctaaacgctcttatattagtttac 79
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttac 67
|||||||||||||||||||||||||
Sbjct: 53 tctaaacgctcttatattagtttac 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 agtactccttctgtaaactaatataa 39
|||||||| |||||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataa 28
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 44 ctaaacgctcttatattagtttac 67
||||||||||||||||||||||||
Sbjct: 38 ctaaacgctcttatattagtttac 15
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttaca 68
|||||| |||||||||||||||||||
Sbjct: 55 tctaaatgctcttatattagtttaca 80
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 tactccttctgtaaactaatataagagt 43
|||||| |||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagt 32
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccttctgtaaactaatataagag 42
|||||| ||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactccttctgtaaactaatataagag 42
|||||| ||||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagag 63
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
||||| ||||||||||||||||||||
Sbjct: 39 tctaagcgctcttatattagtttaca 14
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttaca 68
||||| ||||||||||||||||||||
Sbjct: 55 tctaagcgctcttatattagtttaca 80
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccttctgtaaactaatataagag 42
|||||| ||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 15 gtactccttctgtaaactaatataaga 41
||||||| |||||||||||||||||||
Sbjct: 90 gtactccctctgtaaactaatataaga 64
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 47 aacgctcttatattagtttacaa 69
|||||||||||||||||||||||
Sbjct: 35 aacgctcttatattagtttacaa 13
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 15 gtactccttctgtaaactaatataaga 41
||||||| |||||||||||||||||||
Sbjct: 92 gtactccctctgtaaactaatataaga 66
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttaca 68
||||||||||||||||||| ||||||
Sbjct: 58 tctaaacgctcttatattattttaca 83
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttaca 68
|||||||| |||||||||||||||||
Sbjct: 55 tctaaacgttcttatattagtttaca 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 tactccttctgtaaactaatataaga 41
|||||| |||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataaga 64
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 tctaaacgctcttatattagtttaca 68
|||||||||||||||||| |||||||
Sbjct: 39 tctaaacgctcttatatttgtttaca 14
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 tctaaacgctcttatattagtttaca 68
|||||||||||||||| |||||||||
Sbjct: 55 tctaaacgctcttatagtagtttaca 80
