miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 129 bits (65), Expect = 7e-30
Identities = 80/85 (94%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 66 cttatattagtttacagaggaagta 90
|||||||||||||||||||| ||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 81.8 bits (41), Expect = 1e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| |||||||||||||||||| ||||||| |||| |||| ||||| || ||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 66 cttatattagtttacagaggaagta 90
||||||||||||||| |||| ||||
Sbjct: 65 cttatattagtttacggagggagta 89
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 129 bits (65), Expect = 7e-30
Identities = 83/88 (94%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 88 gtactccctccgtaaactaatataatagcgtttaga--actattttagttatctaaacac 31
Query: 65 tcttatattagtttacagaggaagtact 92
||||||||||||||||||||| ||||||
Sbjct: 30 tcttatattagtttacagagggagtact 3
Score = 65.9 bits (33), Expect = 9e-11
Identities = 75/88 (85%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
|||||||||| ||||||||||||||||| |||||||| |||| |||| |||| || |
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaacgc 61
Query: 65 tcttatattagtttacagaggaagtact 92
| |||||||||||||| |||| ||||||
Sbjct: 62 tattatattagtttacggagggagtact 89
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 129 bits (65), Expect = 7e-30
Identities = 83/88 (94%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 88 gtactccctccgtaaactaatataagagcgtttaga--actattttagttatctaaacac 31
Query: 65 tcttatattagtttacagaggaagtact 92
| ||||||||||||||||||| ||||||
Sbjct: 30 ttttatattagtttacagagggagtact 3
Score = 65.9 bits (33), Expect = 9e-11
Identities = 75/88 (85%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
|||||||||| |||||||||||||| || |||||||| |||| |||| |||| || |
Sbjct: 4 gtactccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacgc 61
Query: 65 tcttatattagtttacagaggaagtact 92
|||||||||||||||| |||| ||||||
Sbjct: 62 tcttatattagtttacggagggagtact 89
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 66 cttatattagtttacagaggaagtac 91
|||||||| ||||| ||||| |||||
Sbjct: 29 cttatattggtttatagagggagtac 4
Score = 65.9 bits (33), Expect = 9e-11
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 2 aatgtactccctccgtaaactaatataagagcgtttagattactattttagttatctaga 61
||||||||||||| ||||| |||||||||| |||||||| |||| |||| |||| |
Sbjct: 1 aatgtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaa 60
Query: 62 cactcttatattagtttacagaggaagta 90
| ||||||||||||||||| |||| ||||
Sbjct: 61 cgctcttatattagtttacggagggagta 89
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 109 bits (55), Expect = 6e-24
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||||||||||||||||||||||||||||| ||||| |||| ||||| || ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 66 cttatattagtttacagaggaagtact 92
|||||||||||||||||||| ||||||
Sbjct: 29 cttatattagtttacagagggagtact 3
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
|||||||||| |||||||||||||||||||||||||| ||||||||||| |||| || |
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgc 63
Query: 65 tcttatattagtttacagaggaagta 90
|||||||||||||||| |||| ||||
Sbjct: 64 tcttatattagtttacggagggagta 89
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| || ||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 66 cttatattagtttacaga 83
|||||| |||||||||||
Sbjct: 65 cttatagtagtttacaga 82
Score = 65.9 bits (33), Expect = 9e-11
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
|||||| || |||||||| ||||||||||||||||| |||| |||| ||||| || ||
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgct 30
Query: 66 cttatattagtttacagaggaagta 90
||||||||| ||||| |||| ||||
Sbjct: 29 cttatattaatttacggagggagta 5
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 11 cctccgtaaactaatataagagcgtttagattactattttagttatctagacactcttat 70
||||||||||||||||||||||||||||||| ||||||||||| ||| | || |||||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 71 attagtttacagaggaagta 90
|||| |||||||||| ||||
Sbjct: 24 attaatttacagagggagta 5
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| ||||| |||||||||||||||| ||| |||| |||| ||||| || ||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 66 cttatattagtttacagagg 85
||||||||||||||| ||||
Sbjct: 65 cttatattagtttacggagg 84
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 9 tccctccgtaaactaatataagagcgtttagattactattttagttatctagacactctt 68
||||| ||||||||||||||||||| |||||| ||||||||||| ||||| | ||||||
Sbjct: 86 tcccttcgtaaactaatataagagcatttagaacactattttagtaatctaaatactctt 27
Query: 69 atattagtttacagaggaagtac 91
||||||||||||||||| |||||
Sbjct: 26 atattagtttacagagggagtac 4
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 3 atgtactccctccgtaaactaatataagagcgtttagattactattttagttatctagac 62
|||||||||||| ||||||||||||||||| |||||||||||| |||| |||| |
Sbjct: 2 atgtactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaat 61
Query: 63 actcttatattagtttac 80
|||||||||||||||||
Sbjct: 62 gctcttatattagtttac 79
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 66 cttatattagtttacagaggaagtac 91
||||||||||||||||||| |||||
Sbjct: 65 tttatattagtttacagagggagtac 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 4 tgtactccctccgtaaactaatataagagcgtttagattactattttagttatctagaca 63
||||||||||| |||||||||||||| | | ||||||| |||| |||| ||||| |||
Sbjct: 91 tgtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaaca 32
Query: 64 ctcttatattagtttacagaggaagta 90
||||||||||||||||| |||| ||||
Sbjct: 31 ctcttatattagtttacggagggagta 5
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
||||||||||||||||||||||||||||||||||| | |||| |||| ||||| | |
Sbjct: 4 gtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgc 63
Query: 65 tcttatattagtttacagaggaagta 90
||||||||||||||||||||||||||
Sbjct: 64 tcttatattagtttacagaggaagta 89
Score = 93.7 bits (47), Expect = 4e-19
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
|||| |||| |||||||||||||||||| ||||||| ||||||||||| | ||| || ||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 66 cttatattagtttacagaggaagtact 92
||||||||||||||| |||| ||||||
Sbjct: 29 cttatattagtttacggagggagtact 3
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
|||||||||||||||| ||||||||||| |||| ||| ||||||||||| ||||| || |
Sbjct: 4 gtactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgc 63
Query: 65 tcttatattagtttacagagg 85
|||||||||||||||| ||||
Sbjct: 64 tcttatattagtttactgagg 84
Score = 81.8 bits (41), Expect = 1e-15
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 7 actccctccgtaaactaatataagagcgtttagattactattttagttatctagacactc 66
|||||||| |||||||||||||||||||||||||| |||| |||| ||| | ||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 67 ttatattagtttacagaggaagtac 91
|||||||| ||||| |||| |||||
Sbjct: 28 ttatattaatttacggagggagtac 4
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 97.6 bits (49), Expect = 2e-20
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| ||||||||||||||||||| |||||| |||| |||||| ||||| | ||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 66 cttatattagtttacagaggaagta 90
|||||||||||||||||||| ||||
Sbjct: 65 cttatattagtttacagagggagta 89
Score = 81.8 bits (41), Expect = 1e-15
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| ||||||||||||||||||| |||||| |||| |||| ||||| | ||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 66 cttatattagtttacagaggaagta 90
|||||||||||||||||||| ||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 19 aactaatataagagcgtttagattactattttagttatctagacactcttatattagttt 78
||||||||||||||||||||||| |||| |||||| ||||| || |||||||||||||||
Sbjct: 76 aactaatataagagcgtttagatcactactttagtgatctaaacgctcttatattagttt 17
Query: 79 acagaggaagta 90
||||||| ||||
Sbjct: 16 acagagggagta 5
Score = 79.8 bits (40), Expect = 6e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| |||||||||||||||||||||||||| |||| |||| ||||| || ||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 66 cttatattagtt 77
||||||||||||
Sbjct: 65 cttatattagtt 76
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| |||||||||||||||| ||||||||| ||||||||||| |||| || ||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 66 cttatattagtttacagaggaagtac 91
|||||||||||||| |||| |||||
Sbjct: 29 tttatattagtttacggagggagtac 4
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
||||||||||||||||||||||||| |||||||||| ||||| |||| ||||| ||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgt 63
Query: 65 tcttatattagtttacagaggaagta 90
||||||||||||||||||||| ||||
Sbjct: 64 tcttatattagtttacagagggagta 89
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
|||||||||| ||||||||||||||||| |||||||| |||| |||||| || || | ||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaac 63
Query: 65 tcttatattagtttacagaggaagta 90
| ||||||||||||||||||| ||||
Sbjct: 64 ttttatattagtttacagagggagta 89
Score = 85.7 bits (43), Expect = 9e-17
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| |||||||||||||| || |||| ||||||| |||| ||||| |||||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 66 cttatattagtttacagaggaagtact 92
|||||||||||||||||||| ||||||
Sbjct: 29 cttatattagtttacagagggagtact 3
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||||||||||||||||||||| |||||||| ||||||||| | || || | ||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgct 64
Query: 66 cttatattagtttacagaggaagta 90
||||||||||||||| |||| ||||
Sbjct: 65 cttatattagtttaccgagggagta 89
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| |||||||||||||||||| |||| || | || |||| ||||| |||||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 66 cttatattagtttacagaggaagta 90
||||||||||||||| |||| ||||
Sbjct: 29 cttatattagtttacggagggagta 5
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 85.7 bits (43), Expect = 9e-17
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 7 actccctccgtaaactaatataagagcgtttagattactattttagttatctagacactc 66
|||||||||||||||||||||||||| |||||||| || |||||| | |||| || |||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 67 ttatattagtttaca 81
|||||||||||||||
Sbjct: 28 ttatattagtttaca 14
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 16 gtaaactaatataagagcgtttagattactattttagttatctagacactcttatattag 75
||||||||||||||||||||| |||| | || | || ||||| || ||||||||||||
Sbjct: 15 gtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctcttatattag 74
Query: 76 tttacagagg 85
||||| ||||
Sbjct: 75 tttacggagg 84
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 4 tgtactccctccgtaaactaatataagagcgtttagattactattttagttatctagaca 63
||||||||||| |||||||||||||||| | ||||||| |||| |||||| ||||| |
Sbjct: 91 tgtactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaag 32
Query: 64 ctcttatattagtttacagagg 85
|||||||||||||||||||||
Sbjct: 31 gtcttatattagtttacagagg 10
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 9 tccctccgtaaactaatataagagcgtttagattactattttagttatctagacactctt 68
|||||| |||||||||||||||| | ||||||| |||| |||| ||||| | ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 69 atattagtttacagaggaagtac 91
||||||||||||||||| |||||
Sbjct: 68 atattagtttacagagggagtac 90
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 16 gtaaactaatataagagcgtttagattactattttagttatctagacactcttatatt 73
|||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct: 15 gtaaacaaatataagagcgtttagatcactactttagtgatctagacactcttatatt 72
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/86 (87%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
|||||||| | |||||||||||||| ||| |||||| |||| |||||| ||||| || |
Sbjct: 90 gtactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgc 31
Query: 65 tcttatattagtttacagaggaagta 90
||||||||||||||||||||| ||||
Sbjct: 30 tcttatattagtttacagagggagta 5
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| ||||||||||||||||||||||||||||||| |||| |||| | ||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 66 cttatattagtttacagaggaagtact 92
|||||||||||||||| || ||||||
Sbjct: 65 tttatattagtttacagggggagtact 91
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||||||||| |||||||||| |||||||| |||| |||||| |||||||| ||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgct 30
Query: 66 cttatattagtttacaga 83
|||||||| ||||||||
Sbjct: 29 cttatatttctttacaga 12
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 4 tgtactccctccgtaaactaatataagagcgtttagattactattttagttatctagaca 63
|||||||| || ||||| ||||||||||||| ||||| |||| |||||||||| |||
Sbjct: 3 tgtactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaaca 62
Query: 64 ctcttatattagtttacagaggaagta 90
|||||||||| ||||| |||| ||||
Sbjct: 63 ctcttatatttctttacggagggagta 89
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 81.8 bits (41), Expect = 1e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
|||||||||||||||||||||||||||| ||||||| |||| ||||| ||||| | ||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcacta-cttagtgatctaaatgct 29
Query: 66 cttatattagtttacagagga 86
||||||||||||||||||||
Sbjct: 28 tttatattagtttacagagga 8
Score = 48.1 bits (24), Expect = 2e-05
Identities = 67/80 (83%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 cctccgtaaactaatataagagcgtttagattactattttagttatctagacactcttat 70
|||| |||||||||||||| ||| ||||||| |||| |||| ||||| | |||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcacta-agtagtgatctaaatgctcttat 67
Query: 71 attagtttacagaggaagta 90
|||||||||| |||| ||||
Sbjct: 68 attagtttacggagggagta 87
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 9 tccctccgtaaactaatataagagcgtttagattactattttagttatctagacactctt 68
|||||| ||||| ||||||||||||||||||| |||||||||| ||||| || | |||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgccctt 27
Query: 69 atattagtttacagaggaagtact 92
||||| ||||||||||| ||||||
Sbjct: 26 atatttgtttacagagggagtact 3
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 20 actaatataagagcgtttagattactattttagttatctagacactcttatattagttta 79
|||||||||||||||||||||| ||||||||| | ||||| | ||||||||||||||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 80 cagaggaagta 90
| |||| ||||
Sbjct: 124 cggagggagta 134
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
|||||||||||||||||||||||||||| ||||||| | || |||| ||||| || ||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 66 cttatattagt 76
|||||||||||
Sbjct: 74 cttatattagt 64
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttag 39
|||||||||| ||||||||||||||||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttag 38
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 64 ctcttatattagtttacagaggaagtact 92
|||||||||||||||||||||| ||||||
Sbjct: 31 ctcttatattagtttacagagggagtact 3
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
||||||||||| ||||||||||||||||| ||||||||| || |||| ||||| | |
Sbjct: 90 gtactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgc 31
Query: 65 tcttatattagtttacagaggaagta 90
| ||||||||||||||||||| ||||
Sbjct: 30 ttttatattagtttacagagggagta 5
Score = 75.8 bits (38), Expect = 9e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| |||||||||||||| ||| ||||||| ||||||||| | ||||| | ||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 66 cttatattagttta 79
||||||||||||||
Sbjct: 65 cttatattagttta 78
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 73.8 bits (37), Expect = 4e-13
Identities = 80/95 (84%), Gaps = 7/95 (7%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcgtt-------tagattactattttagttatc 57
||||||||||| |||||||||||||||||||| ||||| |||| |||||| |||
Sbjct: 97 gtactccctccttaaactaatataagagcgtttagactttagatcactactttagtgatc 38
Query: 58 tagacactcttatattagtttacagaggaagtact 92
|| | |||||||||||||||||||||| ||||||
Sbjct: 37 taaaagctcttatattagtttacagagggagtact 3
Score = 60.0 bits (30), Expect = 5e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattacta 46
|||||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 4 gtactccctctgtaaactaatataagagcttttagatcacta 45
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 9 tccctccgtaaactaatataagagcgtttagattactattttagttatctagacactctt 68
|||||||||||||||||||||||||||||||| ||||| || | ||||| | || ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 69 atattagtttacagaggaagtact 92
||||||||||||| ||| ||||||
Sbjct: 68 atattagtttacaaagggagtact 91
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
||||||||| |||||||||||||| ||| ||||||| | || |||||| |||| || |
Sbjct: 90 gtactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgc 31
Query: 65 tcttatattagtttacagagg 85
|||||||||||||||| ||||
Sbjct: 30 tcttatattagtttacggagg 10
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||||||||| ||||||||||| ||||||| |||| |||| |||| | ||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 66 cttatattagtttacagaggaagta 90
|||||||||||||||||||| ||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 65.9 bits (33), Expect = 9e-11
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||| |||||||||||||||||| || |||| |||| |||||| ||||| | ||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 66 cttatattagtttacagaggaagta 90
|||||||| ||||| |||| ||||
Sbjct: 65 cttatatttctttacggagggagta 89
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 65.9 bits (33), Expect = 9e-11
Identities = 75/88 (85%), Gaps = 7/88 (7%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcg-----tttaga--ttactattttagttatc 57
|||||||||| ||||||||||||||||||| |||||| | ||||||||||| |||
Sbjct: 97 gtactccctctgtaaactaatataagagcgtttcatttagatctcactattttagtgatc 38
Query: 58 tagacactcttatattagtttacagagg 85
|| | ||||||||||||||||||||||
Sbjct: 37 taaatgctcttatattagtttacagagg 10
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 10 ccctccgtaaactaatataagagcgtttagattacta 46
||||| |||||||||||||||||| ||||||| ||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcacta 45
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 64 ctcttatattagtttacagaggaagtact 92
|||||||||||||||||||||| ||||||
Sbjct: 70 ctcttatattagtttacagagggagtact 98
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 65.9 bits (33), Expect = 9e-11
Identities = 72/84 (85%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 4 tgtactccctccgtaaactaatataagagcgtttagattactatt--ttagttatctaga 61
||||||||||| |||||||||||||||| | ||||||| |||| | ||||| ||||| |
Sbjct: 93 tgtactccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaa 34
Query: 62 cactcttatattagtttacagagg 85
|||||||||||||||||||||
Sbjct: 33 aggtcttatattagtttacagagg 10
Score = 52.0 bits (26), Expect = 1e-06
Identities = 71/85 (83%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 9 tccctccgtaaactaatataagagcgtttagattactattt--tagttatctagacactc 66
|||||| |||||||||||||||| | ||||||| |||| | |||| ||||| | ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 67 ttatattagtttacagaggaagtac 91
||||||||||||||||||| |||||
Sbjct: 68 ttatattagtttacagagggagtac 92
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
|||||||||| ||||||||||||||||| |||||| |||| || ||| ||||| | |
Sbjct: 89 tactccctccataaactaatataagagcatttagaacactacttcagtaatctaaatgtt 30
Query: 66 cttatattagtttacagaggaagta 90
||||||||||||||| |||| ||||
Sbjct: 29 cttatattagtttacggagggagta 5
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattact 45
|||||||||||||||||||||||||| | |||||||||||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattact 44
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 10 ccctccgtaaactaatataagagcgtttagattactattttagttatctagacactctta 69
||||| ||||| ||||||||||||||||||| |||| || ||| ||||| || ||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 70 tattagtttacagaggaagta 90
|||| |||||||||| ||||
Sbjct: 25 tatttctttacagaggtagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
|||| |||| ||||| ||||||||||||||||||| ||| |||| ||||| || ||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgct 64
Query: 66 cttatattagtttacagagg 85
|||||||| ||||||||||
Sbjct: 65 cttatatttctttacagagg 84
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
||||||||||||||| ||||||||||||||||| | |||| || ||| |||| || ||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgct 64
Query: 66 cttatattagtttac 80
|||||||| ||||||
Sbjct: 65 cttatatttgtttac 79
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
|||||||| | ||||||||||||| ||||||||||| | || | ||| ||||| | ||
Sbjct: 5 tactcccttcataaactaatataaaagcgtttagatcattaagt-agtgatctaaatgct 63
Query: 66 cttatattagtttacagaggaagtact 92
|||||||||||||||||||| ||||||
Sbjct: 64 cttatattagtttacagagggagtact 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
|||||||||| |||||||||||||||||| ||||||| |||| ||| | ||||| || |
Sbjct: 89 gtactccctctgtaaactaatataagagcatttagatcacta-cttaatgatctaaacgc 31
Query: 65 tcttatattagttta 79
| |||||||||||||
Sbjct: 30 ttttatattagttta 16
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 60.0 bits (30), Expect = 5e-09
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 3 atgtactccctccgtaaactaatataagagcgtttagattactattttagttatctagac 62
|||||||||||| |||| ||||||||||| ||||||| |||| |||||| |||| ||
Sbjct: 92 atgtactccctctataaagaaatataagagcatttagataactactttagtgctctaaac 33
Query: 63 actcttatattagtttacagaggaagtact 92
|||||||||| ||||| |||| ||||||
Sbjct: 32 gctcttatatttctttaccgagggagtact 3
Score = 54.0 bits (27), Expect = 3e-07
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
|||||||||| ||||| |||||||||||||||||| |||| |||||||||| | |
Sbjct: 4 gtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgc 63
Query: 65 tcttatattagtttacagaggaagtac 91
||||||||| |||| ||||| |||||
Sbjct: 64 tcttatatttctttatagagggagtac 90
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgt 35
||||||||||||||||||||||||||||||
Sbjct: 62 tactccctccgtaaactaatataagagcgt 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagc 33
||||||||| ||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagc 32
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 64 ctcttatattagtttacagaggaagta 90
|||||||||||||||||||||| ||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 2 aatgtactccctccgtaaactaatataagagcgtttagattacta 46
||||||||||||| |||||||||||||| ||| |||| |||||||
Sbjct: 1 aatgtactccctctgtaaactaatataaaagcatttaaattacta 45
Score = 52.0 bits (26), Expect = 1e-06
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattactattttagttatctagacact 65
|||||||||||||||||||||||| | |||| | | ||||||||| || || | ||
Sbjct: 89 tactccctccgtaaactaatataaaattatttaaaacattattttagtaatttaaatgct 30
Query: 66 cttatattagtttacagaggaagtac 91
||||||||||||||||||| |||||
Sbjct: 29 tttatattagtttacagagggagtac 4
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactat 47
|||||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 84 gtactccctctgtaaagaaatataagagcgtttagatcactat 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagat 41
||||||||| ||||| |||||||||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagat 40
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 55/64 (85%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 13 tccgtaaactaatataagagcgtttagat---tactattttagttatctagacactctta 69
|||||||| ||||||||| ||||||||| |||||||||||| |||||||| |||||
Sbjct: 12 tccgtaaagaaatataagaacgtttagatcactactattttagtgatctagacgctcttg 71
Query: 70 tatt 73
||||
Sbjct: 72 tatt 75
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 61 acactcttatattagtttacagaggaagta 90
||||||||||||||||||||||||| ||||
Sbjct: 34 acactcttatattagtttacagagggagta 5
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 5 gtactccctccgtaaactaatataagagcg 34
|||||||||| |||||||||||||||||||
Sbjct: 75 gtactccctcggtaaactaatataagagcg 46
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgttt 37
||||||||| ||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagtgttt 36
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagcgtttagattacta 46
|||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcacta 52
Score = 44.1 bits (22), Expect = 3e-04
Identities = 72/88 (81%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagcgtttagat---tactattttagttatctagac 62
||||||||| || || ||||| ||||||||||||| ||||| | |||| ||||| ||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcactactactctagtgatctaaac 64
Query: 63 actcttatattagtttacagaggaagta 90
||||||||||| |||||| ||| ||||
Sbjct: 65 gctcttatattattttacatagggagta 92
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 3 atgtactccctccgtaaactaatataagagcgtttagattactattttagttatctagac 62
|||||||||||||||| | ||||||||| |||||||| |||| |||||||||| |
Sbjct: 2 atgtactccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaat 61
Query: 63 actcttatattagtttacagaggaagta 90
||||||||| |||||||||| ||||
Sbjct: 62 gatcttatatttctttacagagggagta 89
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 72/87 (82%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 5 gtactccctccgtaaactaatataagagcgtttagattactattttagttatctagacac 64
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Sbjct: 4 gtactccctccgtaaataaatgtaagtg--tttagatcactaaagtagtgatctaaacac 61
Query: 65 tcttatattagtttacagaggaagtac 91
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Sbjct: 62 tcttatatttctttacagagggagtac 88
