miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 71/79 (89%), Gaps = 4/79 (5%)
Strand = Plus / Minus
Query: 13 tctgcaaactaatataagactttttagatcactatatgctttagtgatctaaaaagtttt 72
|||| ||||||||||||||| ||||||||||||| |||||||||||||||| || ||
Sbjct: 82 tctgtaaactaatataagaccttttagatcacta----ctttagtgatctaaaaggtctt 27
Query: 73 atattagtttacagaggga 91
|||||||||||||||||||
Sbjct: 26 atattagtttacagaggga 8
Score = 81.8 bits (41), Expect = 2e-15
Identities = 72/82 (87%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 13 tctgcaaactaatataagactttttagatcactatatgctttagtgatctaaaaagtttt 72
|||| ||||||||||||||| ||||||||||||| | ||||||||||||| || ||
Sbjct: 12 tctgtaaactaatataagaccttttagatcactaaag----tagtgatctaaaaggtctt 67
Query: 73 atattagtttacagagggagta 94
||||||||||||||||||||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 77.8 bits (39), Expect = 2e-14
Identities = 71/79 (89%), Gaps = 2/79 (2%)
Strand = Plus / Minus
Query: 13 tctgcaaactaatataagactttttagatcactatatgctttagtgatctaaaaagtttt 72
|||| ||||||||||||||| ||||||||||||| | ||| |||||||||||| || ||
Sbjct: 84 tctgtaaactaatataagaccttttagatcactac-tactt-agtgatctaaaaggtctt 27
Query: 73 atattagtttacagaggga 91
|||||||||||||||||||
Sbjct: 26 atattagtttacagaggga 8
Score = 77.8 bits (39), Expect = 2e-14
Identities = 72/82 (87%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 13 tctgcaaactaatataagactttttagatcactatatgctttagtgatctaaaaagtttt 72
|||| ||||||||||||||| ||||||||||||| | | |||||||||||| || ||
Sbjct: 12 tctgtaaactaatataagaccttttagatcactaagtagt--agtgatctaaaaggtctt 69
Query: 73 atattagtttacagagggagta 94
||||||||||||||||||||||
Sbjct: 70 atattagtttacagagggagta 91
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 72/83 (86%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 13 tctgcaaactaatataagactttttagatcactatatgctttagtgatctaaaaagtttt 72
|||| |||||||||||||| | |||||||||||| |||||| || |||||| ||||
Sbjct: 12 tctgtaaactaatataagagtgtttagatcactag----tttagtaatttaaaaactttt 67
Query: 73 atattagtttacagagggagtat 95
|||||||||||||||||||||||
Sbjct: 68 atattagtttacagagggagtat 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 54 tagtgatctaaaaagttttatattagtttacagagggagta 94
|||||||||||| | | ||||||||||||||||||||||||
Sbjct: 45 tagtgatctaaacactcttatattagtttacagagggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 67/77 (87%), Gaps = 4/77 (5%)
Strand = Plus / Plus
Query: 18 aaactaatataagactttttagatcactatatgctttagtgatctaaaaagttttatatt 77
|||||||||||||| | ||||||| |||| ||||||||||||||| |||||||||
Sbjct: 17 aaactaatataagagtgtttagattacta----ctttagtgatctaaatgtttttatatt 72
Query: 78 agtttacagagggagta 94
|||||||||||||||||
Sbjct: 73 agtttacagagggagta 89
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 65.9 bits (33), Expect = 9e-11
Identities = 67/78 (85%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 19 aactaatataagactttttagatcactatatgctttagtgatctaaaaagttttatatta 78
||||||||||||| |||||||||||| ||||||||||||||| | ||||||||
Sbjct: 76 aactaatataagagcgtttagatcacta----ctttagtgatctaaacgctcttatatta 21
Query: 79 gtttacagagggagtatt 96
||||||||||||||||||
Sbjct: 20 gtttacagagggagtatt 3
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 51 ctttagtgatctaaaaagttttatattagtttacagagggagta 94
|||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 48 ctttagtgatctaaaagctcttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 13 tctgcaaactaatataagactttttagatcacta 46
|||| |||||||||||||| |||||||||||||
Sbjct: 12 tctgtaaactaatataagagcttttagatcacta 45
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 54 tagtgatctaaaaagttttatattagtttacagagggagtatt 96
|||||||||||| ||||||||||||||||||||||||||||
Sbjct: 45 tagtgatctaaatgcttttatattagtttacagagggagtatt 3
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 52 tttagtgatctaaaaagttttatattagtttacagagggagta 94
|||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 47 tttagttatctaaacacttttatattagtttacagagggagta 5
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 65/77 (84%), Gaps = 4/77 (5%)
Strand = Plus / Minus
Query: 18 aaactaatataagactttttagatcactatatgctttagtgatctaaaaagttttatatt 77
|||||||||||||| ||||||| ||||| |||||||||||||| | |||||||
Sbjct: 77 aaactaatataagagcgtttagattactat----tttagtgatctaaatgctcttatatt 22
Query: 78 agtttacagagggagta 94
|||||||||||||||||
Sbjct: 21 agtttacagagggagta 5
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 71 ttatattagtttacagagggagtattag 98
||||||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacagagggagtattag 1
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 56.0 bits (28), Expect = 9e-08
Identities = 65/77 (84%), Gaps = 4/77 (5%)
Strand = Plus / Minus
Query: 18 aaactaatataagactttttagatcactatatgctttagtgatctaaaaagttttatatt 77
|||||||||||||| |||||| |||||| |||||| ||||||| | | |||||||
Sbjct: 77 aaactaatataagagcatttagaacactat----tttagtaatctaaatactcttatatt 22
Query: 78 agtttacagagggagta 94
|||||||||||||||||
Sbjct: 21 agtttacagagggagta 5
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 52 tttagtgatctaaaaagttttatattagtttacagagggagta 94
|||||| ||||||| | | ||||||||||||||||||||||||
Sbjct: 47 tttagttatctaaacactcttatattagtttacagagggagta 5
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 71 ttatattagtttacagagggagtatt 96
||||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacagagggagtatt 3
Score = 50.1 bits (25), Expect = 5e-06
Identities = 68/82 (82%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 13 tctgcaaactaatataagactttttagatcactatatgctttagtgatctaaaaagtttt 72
|||| |||||||||||||| ||||||||||| |||||||||||||| | ||
Sbjct: 12 tctgtaaactaatataagagcgcttagatcacta----ctttagtgatctaagcgctctt 67
Query: 73 atattagtttacagagggagta 94
||||||||||||||||||||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 69 ttttatattagtttacagagggagta 94
||||||||||||||||||||||||||
Sbjct: 30 ttttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 ttttatattagtttacagagggagta 94
|||||||||||||||| |||||||||
Sbjct: 64 ttttatattagtttacggagggagta 89
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 71 ttatattagtttacagagggagtat 95
|||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacagagggagtat 4
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 54 tagtgatctaaaaagttttatattagtttacagagggagta 94
|||||||||||| | | |||||||||||||| |||||||||
Sbjct: 45 tagtgatctaaacactcttatattagtttacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 64/77 (83%), Gaps = 4/77 (5%)
Strand = Plus / Plus
Query: 18 aaactaatataagactttttagatcactatatgctttagtgatctaaaaagttttatatt 77
|||||||||||||| | ||||||||||||| |||| |||| |||| | |||||||
Sbjct: 17 aaactaatataagagtgtttagatcactat----tttaatgatttaaatgctcttatatt 72
Query: 78 agtttacagagggagta 94
||||||| |||||||||
Sbjct: 73 agtttaccgagggagta 89
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 68/82 (82%), Gaps = 4/82 (4%)
Strand = Plus / Minus
Query: 13 tctgcaaactaatataagactttttagatcactatatgctttagtgatctaaaaagtttt 72
|||| |||||||||||||| ||||||||||||| |||||||| ||||| | ||
Sbjct: 82 tctgtaaactaatataagagcatttagatcactat----tttagtgacctaaacgctctt 27
Query: 73 atattagtttacagagggagta 94
|||||||||||| |||||||||
Sbjct: 26 atattagtttacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 54 tagtgatctaaaaagttttatattagtttacagagggagtatt 96
|||||||||||| | ||||||||||||||||||| ||||||
Sbjct: 49 tagtgatctaaatgctcttatattagtttacagaggaagtatt 91
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 68/82 (82%), Gaps = 4/82 (4%)
Strand = Plus / Minus
Query: 13 tctgcaaactaatataagactttttagatcactatatgctttagtgatctaaaaagtttt 72
|||| |||||||||||||| ||||||||||||| |||||| |||||| ||||
Sbjct: 82 tctgtaaactaatataagaacgtttagatcactat----tttagtattctaaacgctttt 27
Query: 73 atattagtttacagagggagta 94
|||||||||||| |||||||||
Sbjct: 26 atattagtttacggagggagta 5
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 tagtgatctaaaaagttttatattagtttacagagggagta 94
|||||||||||| | ||||||||||||||||||||||||
Sbjct: 49 tagtgatctaaacgttcttatattagtttacagagggagta 89
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 54 tagtgatctaaaaagttttatattagtttacagagggagta 94
|||||||||||| | ||||||||||||||||||||||||
Sbjct: 48 tagtgatctaaatgctcttatattagtttacagagggagta 88
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 53 ttagtgatctaaaaagttttatattagtttacagagg 89
||||||||||||| |||||||||||||||||||||
Sbjct: 45 ttagtgatctaaatgcttttatattagtttacagagg 9
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 54 tagtgatctaaaaagttttatattagtttacagagggagta 94
|||||||||||| | ||||||||||||||||||||||||
Sbjct: 45 tagtgatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 ttatattagtttacagagggagta 94
||||||||||||||||||||||||
Sbjct: 73 ttatattagtttacagagggagta 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 52 tttagtgatctaaaaagttttatattagtttacagaggg 90
|||||||||||||| | ||||||||||||||||||||
Sbjct: 47 tttagtgatctaaatgctcttatattagtttacagaggg 9
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 64/77 (83%), Gaps = 4/77 (5%)
Strand = Plus / Minus
Query: 18 aaactaatataagactttttagatcactatatgctttagtgatctaaaaagttttatatt 77
|||||||||||||| |||||| |||||| |||||||||||||| | | |||||||
Sbjct: 77 aaactaatataagagcgtttagaacactat----tttagtgatctaaacactcttatatt 22
Query: 78 agtttacagagggagta 94
||||| ||||||||||
Sbjct: 21 ggtttatagagggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 71 ttatattagtttacagagggagta 94
||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 ttttatattagtttacagagggagta 94
|||||||||||||||||| |||||||
Sbjct: 64 ttttatattagtttacagggggagta 89
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 71 ttatattagtttacagagggagta 94
||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 71 ttatattagtttacagagggagta 94
||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacagagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 63/76 (82%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 20 actaatataagactttttagatcactatatgctttagtgatctaaaaagttttatattag 79
|||||||||||| ||||||||||||| |||| ||||||||| | |||||||||
Sbjct: 64 actaatataagagcgtttagatcactat----tttaatgatctaaatgctcttatattag 119
Query: 80 tttacagagggagtat 95
||||| ||||||||||
Sbjct: 120 tttacggagggagtat 135
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 64/77 (83%), Gaps = 4/77 (5%)
Strand = Plus / Minus
Query: 18 aaactaatataagactttttagatcactatatgctttagtgatctaaaaagttttatatt 77
|||||||||||||| ||||||||||||| |||||||||| ||| | |||||||
Sbjct: 77 aaactaatataagagcgtttagatcactat----tttagtgatccaaacgctcttatatt 22
Query: 78 agtttacagagggagta 94
| |||||||||||||||
Sbjct: 21 aatttacagagggagta 5
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 60/72 (83%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 22 taatataagactttttagatcactatatgctttagtgatctaaaaagttttatattagtt 81
|||||||||| | ||| ||||||||| |||||||||||||| | |||||||||||
Sbjct: 21 taatataagagtgttttgatcactat----tttagtgatctaaacgctcttatattagtt 76
Query: 82 tacagagggagt 93
||| ||||||||
Sbjct: 77 tactgagggagt 88
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 ttttatattagtttacagagggagta 94
||||||||||||||||| ||||||||
Sbjct: 64 ttttatattagtttacaaagggagta 89
