miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 101 bits (51), Expect = 2e-21
Identities = 74/82 (90%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||| |||||||||||||||||| || |||||||||| | ||
Sbjct: 86 tccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacactctt 27
Query: 69 atattagtttacggngggagta 90
|||||||||||||| |||||||
Sbjct: 26 atattagtttacggagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||| || |||| |||| || ||||||| |||| | | ||
Sbjct: 8 tccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgctctt 67
Query: 69 atattagtttacggngggagta 90
|||||||||||| | |||||||
Sbjct: 68 atattagtttaccgagggagta 89
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 93.7 bits (47), Expect = 4e-19
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||||| |||||| |||| ||||||| | |||||||| | ||
Sbjct: 86 tccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacactctt 27
Query: 69 atattagtttacggngggagta 90
|||||||||||||| |||||||
Sbjct: 26 atattagtttacggagggagta 5
Score = 54.0 bits (27), Expect = 3e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 53 tgatctaaacgtttttatattagtttacggngggagta 90
||||||||| |||||||||||||||||| | |||||||
Sbjct: 52 tgatctaaatgtttttatattagtttacagagggagta 89
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 93.7 bits (47), Expect = 4e-19
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| |||||||| |||| |||| || | ||||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgctctt 67
Query: 69 atattagtttacggngggagta 90
|||||||||||||| |||||||
Sbjct: 68 atattagtttacggagggagta 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||| ||| |||| || | || || ||||||||| | | ||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgctctt 27
Query: 69 atattagtttacggngggagta 90
|||||||||||| | |||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 93.7 bits (47), Expect = 4e-19
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||||||||||||||| | |||| ||||| | |||| ||||
Sbjct: 8 tccctctgtaaactaatataaaagcatttaaattactaaaataatgttttaaataatttt 67
Query: 69 atattagtttacggngggagta 90
|||||||||||||| |||||||
Sbjct: 68 atattagtttacggagggagta 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||||| ||||||| ||||| || | || |||| | ||||
Sbjct: 86 tccctccgtaaactaatataaaattatttaaaacattattttagtaatttaaatgctttt 27
Query: 69 atattagtttacggngggagta 90
|||||||||||| | |||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 89.7 bits (45), Expect = 6e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 cctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgtttttat 70
|||||||||||||||||||||||||||| |||| | ||||| ||||||||| | | ||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcact-aagtagtgatctaaatgctcttat 67
Query: 71 attagtttacggngggagta 90
|||||||||||| |||||||
Sbjct: 68 attagtttacggagggagta 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||| |||||||| |||| | | || ||||||||| | ||||
Sbjct: 84 tccctccgtaaactaatataagagcatttagatcact-acttagtgatctaaatgctttt 26
Query: 69 atattagtttac 80
||||||||||||
Sbjct: 25 atattagtttac 14
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 85.7 bits (43), Expect = 9e-17
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 5 gtattccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgt 64
||||||||||||||||||||||||| | | |||| |||| ||||||| ||||||||| |
Sbjct: 4 gtattccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaagg 63
Query: 65 ttttatattagtttacggngggagta 90
| |||||||||||||| | |||||||
Sbjct: 64 tcttatattagtttacagagggagta 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| | | |||| |||| || || ||||||||| | | ||
Sbjct: 86 tccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggtctt 27
Query: 69 atattagtttac 80
||||||||||||
Sbjct: 26 atattagtttac 15
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 17 taaactaatataaaagcatttaaatcattaaagtaatgatctaaacgtttttatattagt 76
||||||||||||| |||||||| || |||||| || ||||||||| | ||||||||||||
Sbjct: 78 taaactaatataagagcatttagattattaaaatagtgatctaaatgcttttatattagt 19
Query: 77 ttacggngggagtattg 93
|||| | ||||||||||
Sbjct: 18 ttacagagggagtattg 2
Score = 77.8 bits (39), Expect = 2e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||||||||||||||||||||||||||| |||| || |||| ||||||| | | ||
Sbjct: 8 tccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgctctt 67
Query: 69 atattagtttacggngggagta 90
||||||||||| || |||||||
Sbjct: 68 atattagtttatggagggagta 89
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| ||| ||| |||| ||||||| |||||||| || | ||
Sbjct: 86 tccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgctctt 27
Query: 69 atattagtttacggngggagtatt 92
|||||||||||| | |||||||||
Sbjct: 26 atattagtttacagagggagtatt 3
Score = 54.0 bits (27), Expect = 3e-07
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| ||| ||| |||| || || |||||||| || | ||
Sbjct: 8 tccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgctctt 67
Query: 69 atattagtttacggngggagta 90
|||||||||||| | |||||||
Sbjct: 68 atattagtttacagagggagta 89
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| ||| |||| |||| ||||||| ||||||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgctctt 67
Query: 69 atattagtt 77
|||||||||
Sbjct: 68 atattagtt 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 19 aactaatataaaagcatttaaatcattaaagtaatgatctaaacgtttttatattagttt 78
||||||||||| ||| |||| |||| || || ||||||||||| | ||||||||||||
Sbjct: 76 aactaatataagagcgtttagatcactactttagtgatctaaacgctcttatattagttt 17
Query: 79 acggngggagtatt 92
|| | |||||||||
Sbjct: 16 acagagggagtatt 3
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||| |||||||| ||||||||| || ||||||||||| | ||
Sbjct: 131 tccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgctctt 72
Query: 69 atattagt 76
||||||||
Sbjct: 71 atattagt 64
Score = 58.0 bits (29), Expect = 2e-08
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 20 actaatataaaagcatttaaatcattaaagtaatgatctaaacgtttttatattagttta 79
|||||||||| ||| |||| |||| || |||||||||||| | | |||||||||||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 80 cggngggagtat 91
||| ||||||||
Sbjct: 124 cggagggagtat 135
Score = 50.1 bits (25), Expect = 5e-06
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 35 tttaaatcattaaagtaatgatctaaacgtttttatattagtttacggngggagta 90
|||| ||||||||| | |||| ||||||| | |||||||||||||| | |||||||
Sbjct: 60 tttagatcattaaaattatgacctaaacgctcttatattagtttacagagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcattta 38
||||||||||||||||||||| ||| ||||
Sbjct: 8 tccctctgtaaactaatataagagcgttta 37
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 6 tattccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgtt 65
||||||||| |||||||||||||| ||| |||| | | ||||||||||||||||| | |
Sbjct: 5 tattccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgct 64
Query: 66 tttatattagtttac 80
|||||||||||||||
Sbjct: 65 tttatattagtttac 79
Score = 71.9 bits (36), Expect = 1e-12
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||| |||||||||||||||||||||||| ||||||| || | |||||||| | ||
Sbjct: 86 tccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgctctt 27
Query: 69 atattagtttacggnggga 87
|||||||||||||| ||||
Sbjct: 26 atattagtttacggaggga 8
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||||||| |||| | | |||| || ||||||||||||| ||
Sbjct: 8 tccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgttctt 67
Query: 69 atattagtttacggngggagta 90
|||||||||||| | |||||||
Sbjct: 68 atattagtttacagagggagta 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| | | |||| |||| || || | |||||||| ||||
Sbjct: 86 tccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgctttt 27
Query: 69 atattagtttacggngggagta 90
|||||||||||||| |||||||
Sbjct: 26 atattagtttacggagggagta 5
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||||||||||||||||||||| ||||||| | |||| || |||||||||| | ||
Sbjct: 86 tccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacactctt 27
Query: 69 atattagtttacggngggagta 90
|||||||||||| | |||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| ||| |||| || | ||||||| || |||||| | ||||
Sbjct: 8 tccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgctttt 67
Query: 69 atattagtttacggngggagta 90
|||||||||||| | |||||||
Sbjct: 68 atattagtttacagggggagta 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||| ||||||||||||||||||||||||| | || || || | ||||||||| | ||
Sbjct: 86 tccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgctctt 27
Query: 69 atattagtttacggngggagta 90
|||||||||||| | |||||||
Sbjct: 26 atattagtttacagagggagta 5
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| |||||||| |||| | | |||||||||||||| ||||
Sbjct: 85 tccctctgtaaactaatataagagcatttagatcact-acttaatgatctaaacgctttt 27
Query: 69 atattagttta 79
|||||||||||
Sbjct: 26 atattagttta 16
Score = 69.9 bits (35), Expect = 6e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 17 taaactaatataaaagcatttaaatcattaaagtaatgatctaaacgtttttatattagt 76
||||||||||||||||| |||| |||||| ||||| ||||||||| | | ||||||||||
Sbjct: 16 taaactaatataaaagcgtttagatcatt-aagtagtgatctaaatgctcttatattagt 74
Query: 77 ttacggngggagta 90
|||| | |||||||
Sbjct: 75 ttacagagggagta 88
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 11 cctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgtttttat 70
||||||||||||||||||| |||||||| |||| || || ||| ||||||| | ||||
Sbjct: 84 cctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgctcttat 25
Query: 71 attagtttacggngggagta 90
|||||||||||| |||||||
Sbjct: 24 attagtttacggagggagta 5
Score = 60.0 bits (30), Expect = 5e-09
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||| ||| |||| ||| |||| || ||||||||| | | ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgctctt 67
Query: 69 atattagtttacggngggagtattg 93
|||||||||||| | || |||||||
Sbjct: 68 atattagtttacagaggaagtattg 92
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 6 tattccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgtt 65
|||||||| ||||||||||||||| ||| || | ||||||||| | |||||||||| |
Sbjct: 5 tattccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactct 64
Query: 66 tttatattagtttacggngggagt 89
|||||||||||||||| ||||||
Sbjct: 65 cttatattagtttacggagggagt 88
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 13 tctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgtttttatat 72
||||||||||| ||||| ||| |||| |||| ||||||| | ||||||||| | ||||||
Sbjct: 82 tctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgctcttatat 23
Query: 73 tagtttacggngggagtat 91
|| ||||||| ||||||||
Sbjct: 22 taatttacggagggagtat 4
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 75/88 (85%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 5 gtattccctctgtaaactaatataaaagcatttaaatcattaa--agtaatgatctaaac 62
||||||||||||||||||||||||| | | |||| |||| ||| |||| |||||||||
Sbjct: 4 gtattccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaa 63
Query: 63 gtttttatattagtttacggngggagta 90
| | |||||||||||||| | |||||||
Sbjct: 64 ggtcttatattagtttacagagggagta 91
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||||||||| |||||||| ||| ||| |||| |||| || ||||||||||| | ||
Sbjct: 8 tccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgctctt 67
Query: 69 atattagtttacgg 82
||||||||||||||
Sbjct: 68 atattagtttacgg 81
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 65.9 bits (33), Expect = 9e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaa 61
||||||||||||||||||||| ||| |||| |||| ||||||| |||||||||
Sbjct: 8 tccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| ||||| ||||||| |||||||| |||| ||||||| |||||| || | | ||
Sbjct: 86 tccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgctctt 27
Query: 69 atattagtttacggngggagtat 91
|||||||||||| | ||||||||
Sbjct: 26 atattagtttacagagggagtat 4
Score = 54.0 bits (27), Expect = 3e-07
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| |||||| | |||| || || ||||||||| | | ||
Sbjct: 8 tccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgctctt 67
Query: 69 atattagtttacggngggagta 90
||||| ||||||| |||||||
Sbjct: 68 atatttctttacggagggagta 89
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||||||||||||||||||||| |||| || | |||| || | |||||||| | ||
Sbjct: 8 tccctctgtaaactaatataaaagtgtttagataactaaaata--gttctaaacgctctt 65
Query: 69 atattagtttacggngggagta 90
|||||||||||||| |||||||
Sbjct: 66 atattagtttacggagggagta 87
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||| ||| |||| |||| |||| || ||||| |||| | ||
Sbjct: 86 tccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactctt 27
Query: 69 atattagtttacggngggagta 90
|||||| ||||||| |||||||
Sbjct: 26 atattaatttacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 53 tgatctaaacgtttttatattagtttacggngggagt 89
||||||||||| | |||||||||||||| | ||||||
Sbjct: 52 tgatctaaacgctcttatattagtttactgagggagt 88
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||| ||||| ||||||| || |||| |||| |||| || || |||||||| | ||
Sbjct: 8 tccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgctctt 67
Query: 69 atattagtttacggngggagta 90
|||||||||||||| |||||||
Sbjct: 68 atattagtttacggagggagta 89
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||| ||| |||| | | |||| || ||||||||||| | ||
Sbjct: 86 tccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgctctt 27
Query: 69 atattagtttacggngggagta 90
|||||||||||| | |||||||
Sbjct: 26 atattagtttacagagggagta 5
Score = 61.9 bits (31), Expect = 1e-09
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| ||| |||| |||| || || | |||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgctctt 67
Query: 69 atattagtttacggngggagta 90
|||||||||||||| |||||||
Sbjct: 68 atattagtttacggagggagta 89
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
|||||| |||||||||||||| | |||||| || | | ||||| || |||||| | | ||
Sbjct: 8 tccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgctctt 67
Query: 69 atattagtttacggngggagtatt 92
||||||||||| || |||||||||
Sbjct: 68 atattagtttatggagggagtatt 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 55 atctaaacgtttttatattagtttacggngggagta 90
||||||| ||| |||||||||||||||| |||||||
Sbjct: 40 atctaaatgttcttatattagtttacggagggagta 5
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| || ||||| || | |||| || || |||||| | | ||
Sbjct: 8 tccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgctctt 67
Query: 69 atattagtttacg 81
|||||||||||||
Sbjct: 68 atattagtttacg 80
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgttttt 68
||||||||||||||||||||| || |||| || | |||| || | |||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaacgctatt 65
Query: 69 atattagtttacggngggagta 90
|||||||||||||| |||||||
Sbjct: 66 atattagtttacggagggagta 87
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 10 ccctctgtaaactaatataaaagcatttaaatcattaaa 48
|||||||||||||||||||| |||||||| |||| ||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcactaaa 47
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 11 cctctgtaaactaatataaaagcatttaaatcattaaagtaatgatctaaacgtttttat 70
|||||||||| ||||||| ||| |||| |||| | ||||| ||||||||||| | ||||
Sbjct: 10 cctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgctcttat 69
Query: 71 att 73
|||
Sbjct: 70 att 72
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagca 34
||||||||||||||||||||| ||||
Sbjct: 8 tccctctgtaaactaatataagagca 33
