miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| ||||||| | ||||||| ||||||||||||||
Sbjct: 88 actccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacactc 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||||||||||
Sbjct: 28 ttatattagtttacggaggga 8
Score = 52.0 bits (26), Expect = 1e-06
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| || |||| || |||| || |||| |||| |||
Sbjct: 6 actccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgctc 65
Query: 67 ttatattagtttacggagggaatagt 92
|||||||||||||| |||||| ||||
Sbjct: 66 ttatattagtttaccgagggagtagt 91
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| || ||||||| |||||| || ||||||||||||||
Sbjct: 88 actccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacactc 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 28 ttatattagtttacagaggga 8
Score = 50.1 bits (25), Expect = 5e-06
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| || |||| || |||| || | || |||| |||
Sbjct: 6 actccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaactt 65
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 66 ttatattagtttacagaggga 86
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| |||| || ||||||||| | |||||||| |||
Sbjct: 6 actccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgctc 65
Query: 67 ttatattagtttacggaggga 87
|||||||||||||||||||||
Sbjct: 66 ttatattagtttacggaggga 86
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| || |||| || ||||||||| |||
Sbjct: 88 actccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgctc 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 28 ttatattagtttacagaggga 8
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| || ||||||||| ||||| ||||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 67 ttatattagtttacggaggga 87
|||||||| ||||||||||||
Sbjct: 28 ttatattaatttacggaggga 8
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 53 tgatctaaacactcttatattagtttacggaggga 87
|||||||||| ||||||||||||||||| ||||||
Sbjct: 52 tgatctaaacgctcttatattagtttactgaggga 86
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| | | |||| || |||||| || | ||||||||||||
Sbjct: 88 actccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacactc 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||||||||||
Sbjct: 28 ttatattagtttacggaggga 8
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 93.7 bits (47), Expect = 4e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||||||||| |||||||| ||| ||| || ||||||||| |||||||||| |||
Sbjct: 6 actccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgctc 65
Query: 67 ttatattagtttacggagg 85
|||||||||||||||||||
Sbjct: 66 ttatattagtttacggagg 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 11 cctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactcttat 70
|||| |||||||||||||| ||| |||| || |||| || ||||| |||| |||||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 71 attagtttacggaggga 87
|||| ||||| ||||||
Sbjct: 24 attaatttacagaggga 8
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| ||||||| ||||||||| || | |||| | |
Sbjct: 6 actccctctgtaaactaatataaaagcatttaaattactaaaataatgttttaaataatt 65
Query: 67 ttatattagtttacggaggga 87
|||||||||||||||||||||
Sbjct: 66 ttatattagtttacggaggga 86
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 72/81 (88%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| | ||||||||| |||||||||| |||
Sbjct: 88 actccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgctc 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 28 ttatattagtttacagaggga 8
Score = 75.8 bits (38), Expect = 9e-14
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| |||| || |||| || | ||||||| |||
Sbjct: 6 actccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgctc 65
Query: 67 ttatattagtttacggagggaatagt 92
||||||||||||||||||||| ||||
Sbjct: 66 ttatattagtttacggagggagtagt 91
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| || |||| || ||||||||| || |||||| |||
Sbjct: 6 actccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgctc 65
Query: 67 ttatattagtttacggagggaata 90
||||||||||||||| ||||||||
Sbjct: 66 ttatattagtttacgaagggaata 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 55 atctaaacactcttatattagtttacggaggga 87
||||||| |||||||||||||||||| ||||||
Sbjct: 40 atctaaatactcttatattagtttacagaggga 8
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 85.7 bits (43), Expect = 9e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| |||| || |||||| || |||||||||| |||
Sbjct: 6 actccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgctc 65
Query: 67 ttatattagtt 77
|||||||||||
Sbjct: 66 ttatattagtt 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 19 aactaatataacagcctttaaatgactaaaatactgatctaaacactcttatattagttt 78
||||||||||| ||| |||| || |||| || |||||||||| |||||||||||||||
Sbjct: 76 aactaatataagagcgtttagatcactactttagtgatctaaacgctcttatattagttt 17
Query: 79 acggaggga 87
|| ||||||
Sbjct: 16 acagaggga 8
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||| ||||| ||||||| || |||| || ||||||||| || ||||||| |||
Sbjct: 6 actccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgctc 65
Query: 67 ttatattagtttacggagggaatagt 92
||||||||||||||||||||| ||||
Sbjct: 66 ttatattagtttacggagggagtagt 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| | |||| || ||||||||||||||
Sbjct: 88 actccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacactc 29
Query: 67 ttatattagttta 79
||||||| |||||
Sbjct: 28 ttatattggttta 16
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| || |||| || ||||||||| | ||||||| |||
Sbjct: 6 actccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacgctc 63
Query: 67 ttatattagtttacggaggga 87
|||||||||||||||||||||
Sbjct: 64 ttatattagtttacggaggga 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 68/81 (83%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| | |||| || | |||||||||||
Sbjct: 86 actccctccgtaaactaatataagagcgtttaga--actattttagttatctaaacactt 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 28 ttatattagtttacagaggga 8
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| ||| || |||||| || |||||||| | |||
Sbjct: 88 actccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgctc 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 28 ttatattagtttacagaggga 8
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| ||| || |||| || |||||||| | |||
Sbjct: 6 actccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgctc 65
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 66 ttatattagtttacagaggga 86
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| | ||||||||| |||||||||| ||
Sbjct: 6 actccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgttc 65
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 66 ttatattagtttacagaggga 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| | | |||| || |||| || | ||||||| ||
Sbjct: 88 actccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgctt 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||||||||||
Sbjct: 28 ttatattagtttacggaggga 8
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| | ||||||||| ||||||||| |||
Sbjct: 6 actccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgctc 65
Query: 67 ttatattagtttacggagg 85
|||||||||||||| ||||
Sbjct: 66 ttatattagtttacagagg 84
Score = 73.8 bits (37), Expect = 4e-13
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 11 cctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactcttat 70
||||||||||||||||||| ||| |||| || |||| || ||| |||||| |||||||
Sbjct: 84 cctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgctcttat 25
Query: 71 attagtttacggaggga 87
|||||||||||||||||
Sbjct: 24 attagtttacggaggga 8
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactctt 68
||||| ||||||||||||||| ||| || | || | |||||| |||||||||| |||||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctctt 67
Query: 69 atattagtttacggaggga 87
|||||||||||||||||||
Sbjct: 68 atattagtttacggaggga 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| || |||| || || | || |||||| ||| |||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 67 ttatattagtttacggagggaatagta 93
|||||||||||||| |||||||||||
Sbjct: 28 ttatattagtttacaaagggaatagta 2
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 75.8 bits (38), Expect = 9e-14
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| || |||| || ||||||||| | ||||||| ||
Sbjct: 6 actccctctgtaaactaatataagagtgtttagataactaaaata--gttctaaacgcta 63
Query: 67 ttatattagtttacggaggga 87
|||||||||||||||||||||
Sbjct: 64 ttatattagtttacggaggga 84
Score = 60.0 bits (30), Expect = 5e-09
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| | |||| || | ||||||||||||
Sbjct: 86 actccctccgtaaactaatataatagcgtttaga--actattttagttatctaaacactc 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 28 ttatattagtttacagaggga 8
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 75.8 bits (38), Expect = 9e-14
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| || | ||||||| |||||||||| |||
Sbjct: 133 actccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgctc 74
Query: 67 ttatattagt 76
||||||||||
Sbjct: 73 ttatattagt 64
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 20 actaatataacagcctttaaatgactaaaatactgatctaaacactcttatattagttta 79
|||||||||| ||| |||| || |||| || ||||||||| ||||||||||||||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 80 cggaggga 87
||||||||
Sbjct: 124 cggaggga 131
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagccttta 38
||||||||||||||||||||||| ||| ||||
Sbjct: 6 actccctctgtaaactaatataagagcgttta 37
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 57 ctaaacactcttatattagtttacggaggga 87
|||||| ||||||||||||||||| ||||||
Sbjct: 38 ctaaacgctcttatattagtttacagaggga 8
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 75.8 bits (38), Expect = 9e-14
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 11 cctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactcttat 70
||||||||||||||||||| ||| |||| || ||||| || ||||||||| |||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcactaag-tagtgatctaaatgctcttat 67
Query: 71 attagtttacggagggaatagt 92
||||||||||||||||| ||||
Sbjct: 68 attagtttacggagggagtagt 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| ||| |||| || ||| | || ||||||||| ||
Sbjct: 86 actccctccgtaaactaatataagagcatttagatcact-acttagtgatctaaatgctt 28
Query: 67 ttatattagtttacggagg 85
|||||||||||||| ||||
Sbjct: 27 ttatattagtttacagagg 9
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||| ||||||||||| ||||| ||| |||| || |||||| || | |||||||| |||
Sbjct: 88 actccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgctc 29
Query: 67 ttatattagtttacggaggga 87
|||||||| ||||||||||||
Sbjct: 28 ttatattaatttacggaggga 8
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactctt 68
||||||||||||||||||||| | | |||| || |||||| || ||||||||| ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 69 atattagtttacggaggga 87
|||||||||||| ||||||
Sbjct: 68 atattagtttacagaggga 86
Score = 63.9 bits (32), Expect = 3e-10
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| | | |||| || |||| || ||||||||| ||
Sbjct: 88 actccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggtc 29
Query: 67 ttatattagtttacggagggaata 90
|||||||||||||| |||||||||
Sbjct: 28 ttatattagtttacagagggaata 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| |||| || |||||| || || |||||| ||
Sbjct: 6 actccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgctt 65
Query: 67 ttatattagtttac 80
||||||||||||||
Sbjct: 66 ttatattagtttac 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||| |||||||||||||||| ||| |||| | |||| || | |||||||| |||
Sbjct: 88 actccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgctc 29
Query: 67 ttatattagtttacggagggaatagta 93
|||||||||||||| |||||| |||||
Sbjct: 28 ttatattagtttacagagggagtagta 2
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| |||| || |||| || | ||||||| |||
Sbjct: 6 actccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgctc 65
Query: 67 ttatattagtttacggaggga 87
||||||||||||| |||||||
Sbjct: 66 ttatattagtttatggaggga 86
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| ||||||||||||| ||| |||| || | ||||||| ||||||||| ||
Sbjct: 88 actccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgctt 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 28 ttatattagtttacagaggga 8
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||| ||||||| || |||| || |||||||| |||||||||| |||
Sbjct: 6 actccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgctc 65
Query: 67 ttatattagtttacggaggga 87
||||||| ||||| ||||||
Sbjct: 66 ttatatttctttactgaggga 86
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||| ||||||||||||||| ||| |||| || | || || | ||||||| |||
Sbjct: 88 actccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgctc 29
Query: 67 ttatattagtttacggagggaata 90
||||||||||||||||||||||||
Sbjct: 28 ttatattagtttacggagggaata 5
Score = 56.0 bits (28), Expect = 8e-08
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactctt 68
|||||| |||||||||||||| ||| |||| | |||||| || ||||||||| || ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 69 atattagtttac 80
||||||||||||
Sbjct: 68 atattagtttac 79
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaa 61
||||||||||||||||||||||| ||| |||| || |||||| || |||||||||
Sbjct: 6 actccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 53 tgatctaaacactcttatattagtttacggaggga 87
||||||||| ||||||||||||||||| ||||||
Sbjct: 42 tgatctaaaagctcttatattagtttacagaggga 8
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 60.0 bits (30), Expect = 5e-09
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| |||| || ||| | || |||||||||| ||
Sbjct: 87 actccctctgtaaactaatataagagcatttagatcact-acttaatgatctaaacgctt 29
Query: 67 ttatattagtttacggagggaatagt 92
||||||||||||| | ||||| ||||
Sbjct: 28 ttatattagtttatgaagggagtagt 3
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 tgatctaaacactcttatattagtttacggaggga 87
||||||||| ||||||||||||||||| ||||||
Sbjct: 51 tgatctaaatgctcttatattagtttacagaggga 85
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||| |||||||| ||||||| ||| | || || |||||| || | ||||||||||||
Sbjct: 6 actccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacactc 65
Query: 67 ttatattagtttacggagggaatagt 92
||||||| |||||||||||| ||||
Sbjct: 66 ttatatttctttacggagggagtagt 91
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
||||||||||||||||||||||| ||| || | || |||| || ||||||||| |||
Sbjct: 6 actccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgctc 65
Query: 67 ttatattagtttacggaggga 87
||||||| ||||||||||||
Sbjct: 66 ttatatttctttacggaggga 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| ||||| ||||||| ||| |||| || |||||| || |||||| || |||
Sbjct: 88 actccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgctc 29
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 28 ttatattagtttacagaggga 8
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaacactc 66
|||||||| |||||||||||||| | | |||| || ||| || || || |||||| |||
Sbjct: 6 actccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgctc 65
Query: 67 ttatattagtttacggaggga 87
||||||||||||| |||||||
Sbjct: 66 ttatattagtttatggaggga 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 65 tcttatattagtttacggaggga 87
|||||||||||||||||||||||
Sbjct: 30 tcttatattagtttacggaggga 8
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 72/86 (83%), Gaps = 2/86 (2%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataacagcctttaaatgacta--aaatactgatctaaacac 64
||||||||||||||||||||||| | | |||| || |||| | || |||||||||
Sbjct: 90 actccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaagg 31
Query: 65 tcttatattagtttacggagggaata 90
|||||||||||||||| |||||||||
Sbjct: 30 tcttatattagtttacagagggaata 5
Score = 52.0 bits (26), Expect = 1e-06
Identities = 68/81 (83%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataacagcctttaaatgactaa--aatactgatctaaacactc 66
||||||||||||||||||||| | | |||| || ||||| | || ||||||||| ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 67 ttatattagtttacggaggga 87
|||||||||||||| ||||||
Sbjct: 68 ttatattagtttacagaggga 88
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 10 ccctctgtaaactaatataacagcctttaaatgactaaaata 51
|||||||||||||||||||| ||| |||| || |||||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcactaaaata 50
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 95 actccctctgtaaactaatataa 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 53 tgatctaaacactcttatattagtttacggaggg 86
||||||||| ||||||||||||||||| |||||
Sbjct: 42 tgatctaaatgctcttatattagtttacagaggg 9
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 59 aaacactcttatattagtttacggaggga 87
|||||||||||||||||||||| ||||||
Sbjct: 36 aaacactcttatattagtttacagaggga 8
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 6 actccctctgtaaactaatataa 28
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 43 actaaaatactgatctaaacactcttatattagtttacggaggga 87
|||||| || ||||||||||||||||||||| ||||| ||||||
Sbjct: 40 actaaagtagtgatctaaacactcttatatttctttacagaggga 84
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ctcttatattagtttacggaggga 87
||||||||||||||||||||||||
Sbjct: 36 ctcttatattagtttacggaggga 59
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 actccctctgtaaactaatataa 29
|||||||||||||||||||||||
Sbjct: 6 actccctctgtaaactaatataa 28
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 3 aaggactccctctgtaaactaatataacagcctttaaatgactaaaatactgatctaaac 62
||||||| |||||||||| ||||||| ||| |||| || |||| || ||||||| ||
Sbjct: 2 aaggacttgctctgtaaacaaatataagagcgtttagatcactactttagtgatctagac 61
Query: 63 actcttatatt 73
|||||||||||
Sbjct: 62 actcttatatt 72
