miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 113 bits (57), Expect = 4e-25
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacac 63
||||||||||||||||||||||||||| |||| |||||| ||||||| | ||||||||||
Sbjct: 90 gtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacac 31
Query: 64 tcttatattagtttacggagg 84
|||||||||||||||||||||
Sbjct: 30 tcttatattagtttacggagg 10
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
||||||||| |||||||||||||| |||||| | ||||||||| || |||||||||||||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 65 cttatattagtttacggagg 84
||||||||||||||||||||
Sbjct: 29 cttatattagtttacggagg 10
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 95.6 bits (48), Expect = 9e-20
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
|||||||||||||||||||||||| |||||| |||||| |||| || | |||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 65 cttatattagtttacggagg 84
||||||||||||||||||||
Sbjct: 65 cttatattagtttacggagg 84
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 87.7 bits (44), Expect = 2e-17
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagca-ttagatcattaaagtactgatctaaacact 64
|||||||||||||||||||||||| ||| |||||||| ||||||| |||||||| | ||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 65 cttatattagtttacggagg 84
||||||||||||||| ||||
Sbjct: 29 cttatattagtttacagagg 10
Score = 63.9 bits (32), Expect = 3e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaagc-attagatcattaaagtactgatctaaacact 64
|||||||||||||||||||||||| ||| |||||||| || || |||||||| | ||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 65 cttatattagtttacggagg 84
||||||||||||||| ||||
Sbjct: 65 cttatattagtttacagagg 84
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 87.7 bits (44), Expect = 2e-17
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
|||||||||||||||||||||||| ||| || |||||| ||||||| |||||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 65 cttatattagtt 76
||||||||||||
Sbjct: 65 cttatattagtt 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 71/83 (85%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 3 tagtactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaac 61
||||||||||| ||| ||||||||||| ||| || |||||| || || ||||||||||
Sbjct: 91 tagtactccct-tgtgaactaatataagagcgtttagatcactactttagtgatctaaac 33
Query: 62 actcttatattagtttacggagg 84
||||||||||||||||| ||||
Sbjct: 32 gctcttatattagtttacagagg 10
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 85.7 bits (43), Expect = 9e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
||||||||| |||||||||||||| |||||| ||||||||||| || |||||||||| ||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 65 cttatattagt 75
|||||||||||
Sbjct: 74 cttatattagt 64
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 agtactccctctgtaaactaatataa 29
||||||||||||||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataa 28
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 35 ttagatcattaaagtactgatctaaacactcttatattagtttacggagg 84
||||||||||||| | ||| |||||| ||||||||||||||||| ||||
Sbjct: 59 ttagatcattaaaattatgacctaaacgctcttatattagtttacagagg 10
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 52 tgatctaaacactcttatattagtttacggagg 84
||||||||| ||||||||||||||||||||||
Sbjct: 97 tgatctaaatgctcttatattagtttacggagg 129
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 85.7 bits (43), Expect = 9e-17
Identities = 69/75 (92%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 11 cctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacactcttat 69
|||||||||||||||||||||||||| |||||| ||| ||| ||||||||| |||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcactaa-gtagtgatctaaatgctcttat 67
Query: 70 attagtttacggagg 84
|||||||||||||||
Sbjct: 68 attagtttacggagg 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
||||||||| |||||||||||||| |||||| |||||| || || ||||||||| ||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcactact-tagtgatctaaatgct 29
Query: 65 cttatattagtttacggagga 85
|||||||||||||| |||||
Sbjct: 28 tttatattagtttacagagga 8
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 4 agtactccctctgtaaactaatataaaagca-ttagatcattaaagtactgatctaaaca 62
|||||||||| |||||||||||||||||||| ||||||||||| || | |||||||
Sbjct: 91 agtactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacg 32
Query: 63 ctcttatattagtttacggagg 84
||||||||||||||||||||||
Sbjct: 31 ctcttatattagtttacggagg 10
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacactctt 67
|||||| |||||||||||||| ||| || ||| | ||||||| ||||||||| || ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 68 atattagtttac 79
||||||||||||
Sbjct: 68 atattagtttac 79
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacactctt 67
||||| ||||||||||||||| ||| || ||||||||||| | |||||||||| |||||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctctt 67
Query: 68 atattagtttacggagg 84
|||||||||||||||||
Sbjct: 68 atattagtttacggagg 84
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
||||||||||||||||||||||||||| || | || | |||| || |||||||||||||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 65 cttatattagtttacggagg 84
||||||||||||||| ||||
Sbjct: 29 cttatattagtttacagagg 10
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 agtactccctctgtaaactaatataa 29
||||||||||||||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataa 28
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaagcattag-atcattaaagtactgatctaaacact 64
||||||||||||||| |||||||| ||| || | |||| |||| || |||||||||| ||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 65 cttatattagtttacggagg 84
||||||||||||||||||||
Sbjct: 65 cttatattagtttacggagg 84
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacactc 65
|||||||| |||||||||||||| ||| || |||||| |||| || ||||| ||||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 66 ttatattagtttacggagg 84
|||||||| ||||||||||
Sbjct: 28 ttatattaatttacggagg 10
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 52 tgatctaaacactcttatattagtttacggagg 84
|||||||||| ||||||||||||||||| ||||
Sbjct: 52 tgatctaaacgctcttatattagtttactgagg 84
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 73.8 bits (37), Expect = 3e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 3 tagtactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaac 61
|||||||||||| |||||||||||||| ||| || || ||| |||| || |||||||||
Sbjct: 2 tagtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaat 61
Query: 62 actcttatattagtttacggaggaa 86
||||||||||||||||| ||||||
Sbjct: 62 gctcttatattagtttacagaggaa 86
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
|||| ||||||||||||||||||| |||||| |||||| || || ||| |||||| ||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 65 cttatattagtttacggagg 84
||||||||||||||||||||
Sbjct: 29 cttatattagtttacggagg 10
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaagca-ttagatcattaaagtactgatctaaacact 64
||||||||||||||||||||||||||||| |||||||| || || | ||||||| ||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 65 cttatattagtttacggagg 84
|||||||||||||| |||||
Sbjct: 65 cttatattagtttatggagg 84
Score = 65.9 bits (33), Expect = 8e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacac 63
|||||||||| ||||||||||||| |||||| |||| |||||| || ||||||||| |
Sbjct: 90 gtactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgc 31
Query: 64 tcttatattagtttacggagg 84
| |||||||||||||| ||||
Sbjct: 30 ttttatattagtttacagagg 10
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 3 tagtactccctctgtaaactaatataaaag-cattagatcattaaagtactgatctaaac 61
|||||||||||||||||||||||||||||| |||||| | |||| || | |||||||
Sbjct: 2 tagtactccctctgtaaactaatataaaagtgtttagataactaaaata--gttctaaac 59
Query: 62 actcttatattagtttacggagg 84
||||||||||||||||||||||
Sbjct: 60 gctcttatattagtttacggagg 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 2 ctagtactccctctgtaaactaatataa 29
||||||||||||| ||||||||||||||
Sbjct: 91 ctagtactccctccgtaaactaatataa 64
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 atctaaacactcttatattagtttacggagg 84
||||||||||| |||||||||||||| ||||
Sbjct: 40 atctaaacacttttatattagtttacagagg 10
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 ctagtactccctctgtaaactaatataaaagc-attagatcattaaagtactgatctaaa 60
|||||||||||||||||||||||||||| ||| |||||||| || || | ||||||
Sbjct: 1 ctagtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaa 60
Query: 61 cactcttatattagtttacggagg 84
| ||||||||||||||||||||||
Sbjct: 61 cgctcttatattagtttacggagg 84
Score = 63.9 bits (32), Expect = 3e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
||||||||| |||||||||||||| ||| || ||| | |||| || |||||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 65 cttatattagtttacggagg 84
||||||||||||||| ||||
Sbjct: 29 cttatattagtttacagagg 10
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
|||||| ||||||||||| ||||| ||| || |||||| ||||||| | |||||||| ||
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgct 30
Query: 65 cttatattagtttacggagg 84
||||||||| ||||||||||
Sbjct: 29 cttatattaatttacggagg 10
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 agtactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaaca 62
|||| ||||||||||||||||||||| | | || |||||| ||||||| |||||||||
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaag 62
Query: 63 ctcttatattagtttacggagg 84
|||||||||||||||| ||||
Sbjct: 63 gtcttatattagtttacagagg 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataa 29
|||||||||||||||||||||||||
Sbjct: 90 gtactccctctgtaaactaatataa 66
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 4 agtactccctctgtaaactaatataaaagc-attagatcattaaagtactgatctaaa 60
|||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 4 agtactccctctgtaaactaatataaaagca-ttagatcattaaagtactgatctaaaca 62
||||||||| ||||||||||||||||||||| ||||| || || || | ||||||||
Sbjct: 91 agtactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacg 32
Query: 63 ctcttatattagtttacggagg 84
||||||||||||||||| ||||
Sbjct: 31 ctcttatattagtttacagagg 10
Score = 61.9 bits (31), Expect = 1e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaagc-attagatcattaaagtactgatctaaacact 64
|||||||||||||||||||||||| ||| |||||| | ||||||| || |||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 65 cttatattagtttac 79
||||||||||||||
Sbjct: 65 tttatattagtttac 79
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaagc-attagatcattaaagtactgatctaaacac 63
|||||||||| |||||||||||||||||| ||||| | |||| || ||||||||||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgt 63
Query: 64 tcttatattagtttacggagg 84
|||||||||||||||| ||||
Sbjct: 64 tcttatattagtttacagagg 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataa 29
||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataa 66
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacac 63
||||||||||| ||||| ||||||| || || |||||| |||| || || ||||||| |
Sbjct: 4 gtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgc 63
Query: 64 tcttatattagtttacggagg 84
|||||||||||||||||||||
Sbjct: 64 tcttatattagtttacggagg 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
||||||||| |||||||||||||| ||| || ||| || || || |||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 65 cttatattagttta 78
|||||||| |||||
Sbjct: 29 cttatattggttta 16
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaagca-ttagatcattaaagtactgatctaaacac 63
|||||||||||||||||||||||||||||| ||| || | |||| || || | |||| |
Sbjct: 4 gtactccctctgtaaactaatataaaagcatttaaattactaaaataatgttttaaataa 63
Query: 64 tcttatattagtttacggagg 84
| |||||||||||||||||||
Sbjct: 64 ttttatattagtttacggagg 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaa 31
||||||||| ||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataaaa 64
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaagca-ttagatcattaaagtactgatctaaacac 63
||||||||||||||||||||||||| || | |||||| | |||| || || |||||| |
Sbjct: 4 gtactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgc 63
Query: 64 tcttatattagtttacg 80
|||||||||||||||||
Sbjct: 64 tcttatattagtttacg 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 atctaaacactcttatattagtttacggagg 84
||||||| |||||||||||||||||| ||||
Sbjct: 40 atctaaatactcttatattagtttacagagg 10
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 65.9 bits (33), Expect = 8e-11
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Minus
Query: 3 tagtactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaac 61
||||||||||||||||||||||||||| |||||| |||||| || || ||||||||||
Sbjct: 91 tagtactccctctgtaaactaatataagagcatttagatcactact-taatgatctaaac 33
Query: 62 actcttatattagttta 78
|| |||||||||||||
Sbjct: 32 gcttttatattagttta 16
Score = 65.9 bits (33), Expect = 8e-11
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 17 taaactaatataaaagcatt-agatcattaaagtactgatctaaacactcttatattagt 75
||||||||||||||||| || |||||||||| ||| ||||||||| |||||||||||||
Sbjct: 16 taaactaatataaaagcgtttagatcattaa-gtagtgatctaaatgctcttatattagt 74
Query: 76 ttacggagg 84
|||| ||||
Sbjct: 75 ttacagagg 83
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaagcat-tagatcattaaagtactgatctaaacac 63
||||||| |||||||| ||||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct: 4 gtactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacac 63
Query: 64 tcttatattagtttacggagg 84
||||||||| ||||||||||
Sbjct: 64 tcttatatttctttacggagg 84
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
|||||||||||||||||||||||| |||||| |||||| || || ||||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 65 cttatattagtttacggagg 84
|||||||| ||||||||||
Sbjct: 65 cttatatttctttacggagg 84
Score = 63.9 bits (32), Expect = 3e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaagcatt-agatcattaaagtactgatctaaacact 64
||||||||| ||||| ||||||| |||||| |||||| ||||||| |||||| || ||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 65 cttatattagtttacggagg 84
||||||||||||||| ||||
Sbjct: 29 cttatattagtttacagagg 10
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 35 ttagatcattaaagtactgatctaaacactcttatatt 72
|||||||| ||||||| |||||||||||||||||||||
Sbjct: 33 ttagatcactaaagtagtgatctaaacactcttatatt 70
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 71/83 (85%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 3 tagtactccctctgtaaactaatataaaag-cattagatcattaaagtactgatctaaac 61
||||||||||||||||||||||||||| || |||||| | |||| || | |||||||
Sbjct: 2 tagtactccctctgtaaactaatataagagtgtttagataactaaaata--gttctaaac 59
Query: 62 actcttatattagtttacggagg 84
|| |||||||||||||||||||
Sbjct: 60 gctattatattagtttacggagg 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 54 atctaaacactcttatattagtttacggagg 84
|||||||||||||||||||||||||| ||||
Sbjct: 40 atctaaacactcttatattagtttacagagg 10
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaagca-ttagatcattaaagtactgatctaaacact 64
||||||||| |||||||||||||| | || |||||| | | ||||| || |||||| ||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 65 cttatattagtttacggagg 84
|||||||||||||| |||||
Sbjct: 65 cttatattagtttatggagg 84
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 56.0 bits (28), Expect = 8e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 ctagtactccctctgtaaactaatataaaagc-attagatcattaaagtactgatctaaa 60
|||||||||||||||||||| ||||||| || ||||||| |||| || |||||||||
Sbjct: 1 ctagtactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaa 60
Query: 61 cactcttatatt 72
| ||||||||||
Sbjct: 61 cgctcttatatt 72
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 4 agtactccctctgtaaactaatataa 29
||||||||||||||||||||||||||
Sbjct: 98 agtactccctctgtaaactaatataa 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 ccctctgtaaactaatataaaagcatt 36
|||||||||||||||||||| ||||||
Sbjct: 9 ccctctgtaaactaatataagagcatt 35
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 71/84 (84%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 4 agtactccctctgtaaactaatataaaagc-attagatcattaa--agtactgatctaaa 60
|||| ||||||||||||||||||||| | | |||||||| ||| |||| |||||||||
Sbjct: 3 agtattccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaa 62
Query: 61 cactcttatattagtttacggagg 84
|||||||||||||||| ||||
Sbjct: 63 aggtcttatattagtttacagagg 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataa 29
|||||||||||||||||||||||||
Sbjct: 92 gtactccctctgtaaactaatataa 68
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaagca 34
|||||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagca 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ctcttatattagtttacggagg 84
||||||||||||||||||||||
Sbjct: 36 ctcttatattagtttacggagg 57
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataa 29
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 58 aaacactcttatattagtttacggagg 84
|||||||||||||||||||||| ||||
Sbjct: 36 aaacactcttatattagtttacagagg 10
