miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 86 tttatattaattta 99
||||||||| ||||
Sbjct: 29 tttatattagttta 16
Score = 44.1 bits (22), Expect = 5e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgttta 58
||||||||| |||||||||||||| | ||||||
Sbjct: 5 tactccctccgtaaactaatataaaagcgttta 37
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 91.7 bits (46), Expect = 2e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||||||||||| | | |||| ||||||| || || ||||||||||||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcactactt-aatgatctaaacgct 30
Query: 86 tttatattaatttatgaagg 105
||||||||| ||||||||||
Sbjct: 29 tttatattagtttatgaagg 10
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 83.8 bits (42), Expect = 5e-16
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||||||||||| | | |||| ||||||||||||| ||||||| |||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 86 tttatattaatttatg 101
|||||||| ||||||
Sbjct: 65 cttatattagtttatg 80
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 79.8 bits (40), Expect = 8e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgct 64
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 65 cttatattagttta 78
Score = 50.1 bits (25), Expect = 8e-06
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 25 ctactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgc 84
|||||||||| |||||||||||||| | |||||| | |||| || |||||||||||
Sbjct: 90 ctactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgc 31
Query: 85 ttttatattaattta 99
| |||||||| ||||
Sbjct: 30 tcttatattagttta 16
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 31 cctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgcttttat 90
|||| |||||||||||||| | |||||| |||||||||||| |||| ||||||| ||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 91 attaattta 99
|||||||||
Sbjct: 24 attaattta 16
Score = 58.0 bits (29), Expect = 3e-08
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 25 ctactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgc 84
|||||||||||||||| |||||||| | ||||| ||||||| || |||||||||||
Sbjct: 4 ctactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgc 63
Query: 85 ttttatattaattta 99
| |||||||| ||||
Sbjct: 64 tcttatattagttta 78
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 73.8 bits (37), Expect = 5e-13
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 25 ctactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgc 84
|||||||||| |||||||||||||| | ||||| ||||||||||||| ||| |||| ||
Sbjct: 4 ctactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgc 63
Query: 85 ttttatattaattta 99
| |||||||| ||||
Sbjct: 64 tcttatattagttta 78
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||||||||||| | || ||| ||||||| |||| ||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 65 cttatattagttta 78
Score = 58.0 bits (29), Expect = 3e-08
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 25 ctactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgc 84
||||||||||||||||||||||||| | || ||| ||||||| || ||||||| |||
Sbjct: 90 ctactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgc 31
Query: 85 ttttatattaattta 99
| |||||||| ||||
Sbjct: 30 tcttatattagttta 16
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||| ||||||||||||||||||| | | |||| |||||||||||| || |||||||||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 29 cttatattagttta 16
Score = 48.1 bits (24), Expect = 3e-05
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
||||||||| |||||||||||||| | |||||| |||||| || |||||||| |||
Sbjct: 5 tactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgct 64
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 65 cttatattagttta 78
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
||||||||| |||||||||||||| | |||||| || ||||||||| |||||||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 29 cttatattagttta 16
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||||||||||| | | |||| ||||||| || |||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 65 cttatattagttta 78
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 69.9 bits (35), Expect = 8e-12
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 27 actccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgctt 86
|||||||| |||||||||||||| | ||||| ||||| ||||||| ||||| ||||||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 87 ttatattaattta 99
|||||||| ||||
Sbjct: 28 ttatattagttta 16
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 69.9 bits (35), Expect = 8e-12
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 25 ctactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgc 84
|||||||||| |||||||||||||| | |||||| | |||||||||| ||||||||| |
Sbjct: 90 ctactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacac 31
Query: 85 ttttatatt 93
| |||||||
Sbjct: 30 tcttatatt 22
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 69.9 bits (35), Expect = 8e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||||||||||| | |||||| ||||||| || ||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 86 tttatatta 94
||||||||
Sbjct: 65 cttatatta 73
Score = 63.9 bits (32), Expect = 5e-10
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||| ||| ||||||||||| | |||||| ||||||| |||| ||||||||||||
Sbjct: 88 tactccct-tgtgaactaatataagagcgtttagatcactactttagtgatctaaacgct 30
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 29 cttatattagttta 16
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 67.9 bits (34), Expect = 3e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 40 actaatataanaacgtttanatcactattttaacgatctaaacgcttttatattaattta 99
|||||||||| | |||||| ||||||||||||| |||||||| ||| |||||||| ||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Score = 61.9 bits (31), Expect = 2e-09
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaac 82
|||||||||||||||||||||||| | |||||| ||| ||||||| |||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttaggtcataattttaatgatctaaac 61
Score = 46.1 bits (23), Expect = 1e-04
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
||||||||| |||||||||||||| | | |||| |||| || || ||||||||||||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 86 tttatatta 94
||||||||
Sbjct: 74 cttatatta 66
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
||||||||| ||||| |||||||| | |||| |||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgct 64
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 65 cttatattagttta 78
Score = 54.0 bits (27), Expect = 5e-07
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 27 actccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgctt 86
|||||||| |||||||||||||| | |||||| ||||||| || |||| |||| ||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 87 ttatattaattta 99
|||||||||||||
Sbjct: 28 ttatattaattta 16
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 63.9 bits (32), Expect = 5e-10
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||||||||||| | | |||| ||||||| |||| |||||||| | |
Sbjct: 89 tactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggt 30
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 29 cttatattagttta 16
Score = 48.1 bits (24), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 29 tccctctgtaaactaatataanaacgtttanatcacta 66
||||||||||||||||||||| | | |||| |||||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcacta 45
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcacta 66
|||||||||||||||||||||||| ||| |||| |||||||
Sbjct: 89 tactccctctgtaaactaatataaaaacatttagatcacta 49
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
||||||||| |||||||||||||| | ||||| || |||| |||| |||||||| | |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 86 tttatattaattta 99
||||||||| ||||
Sbjct: 65 tttatattagttta 78
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 60.0 bits (30), Expect = 8e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||||||||||| | | || | ||||||| |||| |||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 86 tttatatt 93
|||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 25 ctactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgc 84
||||||||||||||||||||||||| | |||||| || |||| || | |||||| ||
Sbjct: 4 ctactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgc 63
Query: 85 ttttatattaattta 99
|||||||||| ||||
Sbjct: 64 ttttatattagttta 78
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
||||||| |||||||||||||||| | | |||| | ||||| |||| |||||||||||
Sbjct: 89 tactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgct 30
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 29 cttatattagttta 16
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 58.0 bits (29), Expect = 3e-08
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 25 ctactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgc 84
|||||||||| |||||||||||||| | | |||| ||||||| ||| |||||||| ||
Sbjct: 88 ctactccctccgtaaactaatataagagcatttagatcacta-cttagtgatctaaatgc 30
Query: 85 ttttatattaattta 99
|||||||||| ||||
Sbjct: 29 ttttatattagttta 15
Score = 44.1 bits (22), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 31 cctctgtaaactaatataanaacgtttanatcacta 66
||||||||||||||||||| | | |||| |||||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcacta 44
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 58.0 bits (29), Expect = 3e-08
Identities = 63/74 (85%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
||||||||| |||||||||||||| | |||||| | ||||||||| |||||||| ||
Sbjct: 87 tactccctccgtaaactaatataagagcgtttaga--actattttagttatctaaacact 30
Query: 86 tttatattaattta 99
||||||||| ||||
Sbjct: 29 tttatattagttta 16
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataa 49
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 25 ctactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgc 84
||||||| ||||||||||| ||||| | |||||| ||||||| || ||||||||||
Sbjct: 90 ctactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgc 31
Query: 85 ttttatattaattta 99
| |||||||||||||
Sbjct: 30 tcttatattaattta 16
Score = 56.0 bits (28), Expect = 1e-07
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
||||||||| ||||| |||||||| | |||||| || |||| |||| ||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 86 tttata 91
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactatttta 71
|||||||||||||||||||||||| | ||||| ||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcactagttta 50
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataa 49
||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataa 66
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 54.0 bits (27), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcacta 66
|||||||||||||||||||||||| | | |||| |||||||
Sbjct: 91 tactccctctgtaaactaatataagaccttttagatcacta 51
Score = 48.1 bits (24), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 29 tccctctgtaaactaatataanaacgtttanatcacta 66
||||||||||||||||||||| | | |||| |||||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcacta 45
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 54.0 bits (27), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcacta 66
|||||||||||||||||||||||| | | |||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcttttagatcacta 45
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 54.0 bits (27), Expect = 5e-07
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 29 tccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgctttt 88
|||||| ||||| ||||||| | |||||| |||||||||||| ||||||||||| ||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgccctt 27
Query: 89 atatt 93
|||||
Sbjct: 26 atatt 22
Score = 44.1 bits (22), Expect = 5e-04
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||||||||||| ||||||| |||||| ||| ||| || ||||||||||||
Sbjct: 5 tactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgct 64
Query: 86 tttatatt 93
|||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 23 agctactccctctgtaaactaatataanaacgtttanatcacta 66
|||||| |||||||||||||||||||| | | |||| |||||||
Sbjct: 2 agctaccccctctgtaaactaatataagagcatttagatcacta 45
Score = 50.1 bits (25), Expect = 8e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgttt 57
|||||||||||||||||||||||| | |||||
Sbjct: 96 tactccctctgtaaactaatataagagcgttt 65
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 30 ccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgctttta 89
||||||||||| ||||||| | |||||| ||||||| || | |||||||||||| |||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 90 tatt 93
||||
Sbjct: 25 tatt 22
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 50.1 bits (25), Expect = 8e-06
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 29 tccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgctttt 88
|||||| |||||||||||||| | |||||| | |||| ||| |||||||| ||||||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 89 atattaattta 99
|||||| ||||
Sbjct: 68 atattagttta 78
Score = 48.1 bits (24), Expect = 3e-05
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
|||||||| ||||||||||||||| | | |||| |||| || |||| ||||||||||
Sbjct: 89 tactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgct 30
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 29 cttatattagttta 16
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 50.1 bits (25), Expect = 8e-06
Identities = 62/74 (83%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaacgct 85
||||||||| |||||||||||||| | |||||| | ||||||||| |||||||| ||
Sbjct: 87 tactccctccgtaaactaatataatagcgtttaga--actattttagttatctaaacact 30
Query: 86 tttatattaattta 99
|||||||| ||||
Sbjct: 29 cttatattagttta 16
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataa 49
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataa 49
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataa 49
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 24 gctactccctctgtaaactaatataa 49
||||||||||| ||||||||||||||
Sbjct: 64 gctactccctccgtaaactaatataa 39
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataa 49
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataa 49
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 48.1 bits (24), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactat 67
||||||||||||||| ||||||| | |||||| ||||||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcactat 42
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcacta 66
||||||||||||||| ||||||| | |||||| |||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcacta 45
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 26 tactccctctgtaaactaatataanaacgtttanatcactattttaacgatctaaac 82
||||||||||||||| ||||||| | ||||| ||||||| |||| |||||||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaac 31
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 26 tactccctctgtaaactaatataanaacgttta 58
||||||||| |||||||||||||| ||| ||||
Sbjct: 5 tactccctccgtaaactaatataagaacattta 37
