miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||||||||||||||||||||| |||| |||| ||||||| | ||||||| |
Sbjct: 90 gtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacac 31
Query: 65 ttttatattagtttacggagggagta 90
| ||||||||||||||||||||||||
Sbjct: 30 tcttatattagtttacggagggagta 5
Score = 65.9 bits (33), Expect = 9e-11
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
||||||||| |||||||||||||| | ||||| || | || || |||||||||| ||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 66 tttatattagtttacggagggagta 90
||||||||||||||| |||||||||
Sbjct: 65 tttatattagtttacagagggagta 89
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||||||||||||||||||| | ||||||| | |||| ||||| | ||||||
Sbjct: 4 gtactccctctgtaaactaatataaaagcatttaaattactaaaataatgttttaaataa 63
Query: 65 ttttatattagtttacggagggagta 90
||||||||||||||||||||||||||
Sbjct: 64 ttttatattagtttacggagggagta 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
||||||||| |||||||||||||||| |||||| ||||| || | || ||||| |
Sbjct: 89 tactccctccgtaaactaatataaaattatttaaaacattattttagtaatttaaatgct 30
Query: 66 tttatattagtttacggagggagta 90
||||||||||||||| |||||||||
Sbjct: 29 tttatattagtttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 97.6 bits (49), Expect = 2e-20
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
||||||||| |||||||||||||| | | |||||||||||||| || ||||||||| | |
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 66 tttatattagtttacggagggagta 90
||||||||||||||||||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
||||||||| |||||||||||||| | ||||| |||| || ||||||| ||||| |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgct 64
Query: 66 tttatattagtttacggagggagta 90
|||||||||||||| |||||||||
Sbjct: 65 cttatattagtttaccgagggagta 89
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 74/85 (87%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||||||||||||||||||||||||| ||||||| | |||| || ||||||||| | |
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 66 tttatattagtttacggagggagta 90
|||||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||||||||||||||||| | ||||| |||| || || | || |||| |
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaac 63
Query: 65 ttttatattagtttacggagggagtat 91
|||||||||||||||| ||||||||||
Sbjct: 64 ttttatattagtttacagagggagtat 90
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||||||||||||||||||||||| | |||||| || | ||||||| || ||||||| |
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 66 tttatattagtttacggagggagta 90
||||||||||||||| | |||||||
Sbjct: 65 tttatattagtttacagggggagta 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaa 31
|||||||| ||||||||||||||||||
Sbjct: 90 gtactccccctgtaaactaatataaaa 64
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
|||||||||| ||||||||||||| | | |||| || |||||| || ||||||||||
Sbjct: 90 gtactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgc 31
Query: 65 ttttatattagtttacggagggagtattg 93
|||||||||||||||| ||||||||||||
Sbjct: 30 ttttatattagtttacagagggagtattg 2
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||||||||||||||||||||||||| | |||| |||| || |||| |||||||| |
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 66 tttatattagtttacggagggagta 90
||||||||||||| ||||||||||
Sbjct: 65 cttatattagtttatggagggagta 89
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 79.8 bits (40), Expect = 6e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 cctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatttttat 70
||||||||||||||||||||| | |||| |||| ||| ||| |||||||||| | ||||
Sbjct: 9 cctctgtaaactaatataaaagcatttagatcactaa-gtagtgatctaaatgctcttat 67
Query: 71 attagtttacggagggagta 90
||||||||||||||||||||
Sbjct: 68 attagtttacggagggagta 87
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||||||||||||||||||||||| | || ||| |||| ||||||| |||||||| |
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 66 tttatattagtttacggagggagtatt 92
|||||||||||||| |||||||||||
Sbjct: 29 cttatattagtttacagagggagtatt 3
Score = 50.1 bits (25), Expect = 5e-06
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||||||||||||||||||||||| | || ||| |||| || || |||||||| |
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 66 tttatattagtttacggagggagta 90
|||||||||||||| |||||||||
Sbjct: 65 cttatattagtttacagagggagta 89
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatattttt 68
|||||| |||||||||||||| | |||||| | | |||||||||||||||||| ||||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 69 atattagtttacggagggagta 90
|||||||||||| ||||||||
Sbjct: 68 atattagtttacaaagggagta 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||| ||||||||||||||||| | |||| ||||||| || | ||||||
Sbjct: 90 gtactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgc 31
Query: 65 ttttatattagtttacggaggga 87
| |||||||||||||||||||||
Sbjct: 30 tcttatattagtttacggaggga 8
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatattttt 68
||||||||||||||||||||| | | |||| |||| ||||||| ||||||||| | ||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 69 atattagtttacggagggagta 90
|||||||||||| |||||||||
Sbjct: 68 atattagtttacagagggagta 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||||||||||||||||| | | |||| |||| || || |||||||||
Sbjct: 90 gtactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaagg 31
Query: 65 ttttatattagtttacggaggga 87
| |||||||||||||| ||||||
Sbjct: 30 tcttatattagtttacagaggga 8
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
|||||||||| |||||||||||||||| |||||| | | |||| || ||||||||| |
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgt 63
Query: 65 ttttatattagtttacggagggagta 90
| |||||||||||||| |||||||||
Sbjct: 64 tcttatattagtttacagagggagta 89
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||||||||||||||||||||||| |||||||| |||| || || | |||||| |
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 66 tttatattagtttacggagggagta 90
|||||||||||||||||||||||||
Sbjct: 29 tttatattagtttacggagggagta 5
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 75.8 bits (38), Expect = 9e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 17 taaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatttttatattagt 76
||||||||||||||| |||||| |||||||| ||| |||||||||| | ||||||||||
Sbjct: 16 taaactaatataaaagcgtttagatcattaa-gtagtgatctaaatgctcttatattagt 74
Query: 77 ttacggagggagta 90
|||| |||||||||
Sbjct: 75 ttacagagggagta 88
Score = 60.0 bits (30), Expect = 5e-09
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||||||||||||||||| | | |||| |||| | | ||||||||||||
Sbjct: 89 gtactccctctgtaaactaatataagagcatttagatcact-acttaatgatctaaacgc 31
Query: 65 ttttatattagtttacggagggagta 90
||||||||||||||| | ||||||||
Sbjct: 30 ttttatattagtttatgaagggagta 5
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
|||||||||| |||||||||||||| | |||||| ||| |||| || ||||||||||
Sbjct: 4 gtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgc 63
Query: 65 ttttatattagtttacggagggagtattg 93
| |||||||||||||| |||| |||||||
Sbjct: 64 tcttatattagtttacagaggaagtattg 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||| ||||||||||||||||||| | | |||| |||| || || ||| ||||| |
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 66 tttatattagtttacggagggagta 90
||||||||||||||||||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||||||||||||||||||||||| | | |||| |||| |||| || | ||||||| |
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 66 tttatattagtttacggagggagta 90
||||||||||||||||||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
||||||||| |||||||||||||| | |||||| || | || || |||||||||| |
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 66 tttatattagtttacggagggagta 90
|||||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 7 actccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatattt 66
|||||||| |||||||||||||| | |||||| |||| |||| || ||||| ||| | |
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 67 ttatattagtttacggagggagta 90
|||||||| |||||||||||||||
Sbjct: 28 ttatattaatttacggagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaa 61
|||||||||||||||||||||||| | |||||| |||| ||||||| |||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaa 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 73/88 (82%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||| ||| ||||||||||| | |||||| |||| || || |||||||||
Sbjct: 89 gtactccct-tgtgaactaatataagagcgtttagatcactactttagtgatctaaacgc 31
Query: 65 ttttatattagtttacggagggagtatt 92
| |||||||||||||| |||||||||||
Sbjct: 30 tcttatattagtttacagagggagtatt 3
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
||||||||| |||||||||||||| ||| |||| || | | ||||| || ||||||| |
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 66 tttatattagtttacggagggagtatt 92
||||||||||||| ||||||||||||
Sbjct: 65 cttatattagtttatggagggagtatt 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 55 atctaaatatttttatattagtttacggagggagta 90
|||||||| || ||||||||||||||||||||||||
Sbjct: 40 atctaaatgttcttatattagtttacggagggagta 5
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||||| ||||||||||| ||||| | |||||| |||| ||||||| | ||||||| |
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgct 30
Query: 66 tttatattagtttacggagggagtat 91
|||||||| ||||||||||||||||
Sbjct: 29 cttatattaatttacggagggagtat 4
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatattttt 68
||||| ||||||||||||||| | |||| | ||||||||| | ||||||||| | ||
Sbjct: 8 tccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctctt 67
Query: 69 atattagtttacggagggagt 89
|||||||||||||||||||||
Sbjct: 68 atattagtttacggagggagt 88
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 65.9 bits (33), Expect = 9e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaa 61
||||||||||||||||||||||||| | | |||| |||| ||||||| |||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 20 actaatataaaaacgtttaaatcattaaagtaatgatctaaatatttttatattagttta 79
|||||||||| | |||||| |||| || ||||||||||||| | |||||||||||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 80 cggagggagtat 91
||||||||||||
Sbjct: 124 cggagggagtat 135
Score = 56.0 bits (28), Expect = 8e-08
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaa 61
||||||||| |||||||||||||| | | |||| ||||||||| || |||||||||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaa 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgttta 38
||||||||||||||||||||||||| | ||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgttta 37
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
||||||||||||||| |||||||| | ||||| |||| |||| || ||||||||| |
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgct 64
Query: 66 tttatattagtttacggagg 85
|||||||||||||||||||
Sbjct: 65 cttatattagtttacggagg 84
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 73/86 (84%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||||||||||||||||||| ||||| || | |||| || | ||||||
Sbjct: 4 gtactccctctgtaaactaatataaaagtgtttagataactaaaata--gttctaaacgc 61
Query: 65 ttttatattagtttacggagggagta 90
| ||||||||||||||||||||||||
Sbjct: 62 tcttatattagtttacggagggagta 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 55 atctaaatatttttatattagtttacggagggagta 90
||||||| | |||||||||||||||| |||||||||
Sbjct: 40 atctaaacacttttatattagtttacagagggagta 5
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
||||||||| ||||| ||||||| | | |||| |||| ||||||| |||||| ||| |
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 66 tttatattagtttacggagggagtat 91
|||||||||||||| ||||||||||
Sbjct: 29 cttatattagtttacagagggagtat 4
Score = 50.1 bits (25), Expect = 5e-06
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
|||||||||||||||||||||||| | | || | |||| || || |||||||||| |
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 66 tttatattagtttacggagggagta 90
||||||| |||||||||||||||
Sbjct: 65 cttatatttctttacggagggagta 89
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||| ||||| ||||||| | ||||| |||| |||| || || ||||||
Sbjct: 4 gtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgc 63
Query: 65 ttttatattagtttacggagggagta 90
| ||||||||||||||||||||||||
Sbjct: 64 tcttatattagtttacggagggagta 89
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 60.0 bits (30), Expect = 5e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||||||||||||||||| | |||||| |||| || || | ||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgc 63
Query: 65 ttttatattagtttacggagggagta 90
| ||||||||||||||||||||||||
Sbjct: 64 tcttatattagtttacggagggagta 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 6 tactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatatt 65
||||||||| |||||||||||||| | |||||| | | |||| || ||||||||| |
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 66 tttatattagtttacggagggagta 90
|||||||||||||| |||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/84 (84%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 9 tccctctgtaaactaatataaaaacgtttaaatcattaa--agtaatgatctaaatattt 66
||||||||||||||||||||| | | |||| |||| ||| |||| ||||||||| |
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtc 67
Query: 67 ttatattagtttacggagggagta 90
|||||||||||||| |||||||||
Sbjct: 68 ttatattagtttacagagggagta 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataa 29
|||||||||||||||||||||||||
Sbjct: 92 gtactccctctgtaaactaatataa 68
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 72/86 (83%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||||||||||||||||| | ||||| || | |||| || | ||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagataactaaaata--gttctaaacgc 61
Query: 65 ttttatattagtttacggagggagta 90
| ||||||||||||||||||||||||
Sbjct: 62 tattatattagtttacggagggagta 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataaaaacgttta 38
|||||||||| |||||||||||||| | ||||||
Sbjct: 88 gtactccctccgtaaactaatataatagcgttta 55
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||||||||||||||||||||| | |||| || | |||| || || |||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgc 63
Query: 65 ttttatattagtttacggaggga 87
| ||||||||||||||| |||||
Sbjct: 64 tcttatattagtttacgaaggga 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 55 atctaaatatttttatattagtttacggagggagta 90
||||||||| | |||||||||||||| |||||||||
Sbjct: 40 atctaaatactcttatattagtttacagagggagta 5
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 5 gtactccctctgtaaactaatataaaaacgtttaaatcattaaagtaatgatctaaatat 64
||||||| |||||||| ||||||| | ||| || |||| ||||||| | ||||||| |
Sbjct: 4 gtactccttctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacac 63
Query: 65 ttttatattagtttacggagggagta 90
| ||||||| |||||||||||||||
Sbjct: 64 tcttatatttctttacggagggagta 89
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 5 gtactccctctgtaaactaatataa 29
|||||||||||||||||||||||||
Sbjct: 97 gtactccctctgtaaactaatataa 73
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataa 29
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 ttatattagtttacggagggagta 90
||||||||||||||||||||||||
Sbjct: 39 ttatattagtttacggagggagta 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 67 ttatattagtttacggagggagtatt 92
|||||||||||||| |||||||||||
Sbjct: 28 ttatattagtttacagagggagtatt 3
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tactccctctgtaaactaatataa 29
||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataa 28
