miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 121 bits (61), Expect = 2e-27
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 66 cttatattantttacanagggagta 90
||||||||| |||||| ||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 65.9 bits (33), Expect = 9e-11
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||||||||||||||| |||| || |||| || | |||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 66 cttatattantttacanagggagta 90
||||||||| ||||| ||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 109 bits (55), Expect = 6e-24
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 5 ctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacac 64
|||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||
Sbjct: 90 ctactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacac 31
Query: 65 tcttatattantttacanagggagtac 91
||||||||| |||| | |||||||||
Sbjct: 30 tcttatattggtttatagagggagtac 4
Score = 65.9 bits (33), Expect = 9e-11
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||| |||||||||||||||| || |||| || || ||||||| ||
Sbjct: 5 tactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgct 64
Query: 66 cttatattantttacanagggagta 90
||||||||| ||||| ||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 5 ctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacac 64
|||||||||||||||||||||||||||||||||| || ||||||||| |||| |||| |
Sbjct: 4 ctactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgc 63
Query: 65 tcttatattantttacanagggagta 90
|||||||||| ||||| ||||||||
Sbjct: 64 tcttatattagtttaccgagggagta 89
Score = 75.8 bits (38), Expect = 9e-14
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 5 ctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacac 64
|||||||||| ||||||||||||||||| |||| || | || || ||||||||||||
Sbjct: 90 ctactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacac 31
Query: 65 tcttatattantttacanagggagta 90
|||||||||| ||||| ||||||||
Sbjct: 30 tcttatattagtttacggagggagta 5
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 107 bits (54), Expect = 3e-23
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 66 cttatattantttacanagggagtac 91
|||||||| |||||| |||||||||
Sbjct: 65 tttatattagtttacagagggagtac 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| |||||||||||||| | |||| || |||| || | |||||||||||
Sbjct: 89 tactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacact 30
Query: 66 cttatattantttacanagggagta 90
||||||||| ||||| ||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||| |||||||||||||||| || ||||||||| |||||||||| ||
Sbjct: 5 tactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgct 64
Query: 66 cttatattantttacanagggagt 89
||||||||| ||||| |||||||
Sbjct: 65 cttatattagtttactgagggagt 88
Score = 81.8 bits (41), Expect = 1e-15
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 7 actccctccgtaaactaatataagagtgtttanattactattttantgatctaaacactc 66
|||||||| ||||||||||||||||| ||||| || |||| || ||||| ||||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 67 ttatattantttacanagggagtac 91
|||||||| ||||| |||||||||
Sbjct: 28 ttatattaatttacggagggagtac 4
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| |||||||||||||| ||| |||| ||||||| || |||||||||||||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 66 cttatattantttacanagggagtactt 93
||||||||| |||||| |||||||||||
Sbjct: 29 cttatattagtttacagagggagtactt 2
Score = 89.7 bits (45), Expect = 6e-18
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||||||||||||||||||||| || |||| |||| | || |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaact 64
Query: 66 cttatattantttacanagggagta 90
|||||||| |||||| ||||||||
Sbjct: 65 tttatattagtttacagagggagta 89
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 103 bits (52), Expect = 4e-22
Identities = 78/87 (89%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
|||||||||||||||||||||||| || ||||| | ||||||||| | |||||||||||
Sbjct: 87 tactccctccgtaaactaatataatagcgtttaga--actattttagttatctaaacact 30
Query: 66 cttatattantttacanagggagtact 92
||||||||| |||||| ||||||||||
Sbjct: 29 cttatattagtttacagagggagtact 3
Score = 63.9 bits (32), Expect = 3e-10
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||||||||||||||||||||| || |||| || | ||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagataactaaaatagt--tctaaacgct 62
Query: 66 cttatattantttacanagggagtact 92
|||||||| ||||| ||||||||||
Sbjct: 63 attatattagtttacggagggagtact 89
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 11 cctccgtaaactaatataagagtgtttanattactattttantgatctaaacactcttat 70
|||||||||||||||||||||| ||||| || ||||||||| ||||| |||| |||||||
Sbjct: 84 cctccgtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttat 25
Query: 71 attantttacanagggagta 90
|||| |||||| ||||||||
Sbjct: 24 attaatttacagagggagta 5
Score = 63.9 bits (32), Expect = 3e-10
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 4 tctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaaca 63
||||||||||| ||||| ||||||||||| |||| || |||| || ||||||||||
Sbjct: 3 tctactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacg 62
Query: 64 ctcttatattantttac 80
||||||||||| |||||
Sbjct: 63 ctcttatattagtttac 79
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 103 bits (52), Expect = 4e-22
Identities = 78/87 (89%), Gaps = 2/87 (2%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||||||||||||||| ||||| | ||||||||| | |||||||||||
Sbjct: 87 tactccctccgtaaactaatataagagcgtttaga--actattttagttatctaaacact 30
Query: 66 cttatattantttacanagggagtact 92
|||||||| |||||| ||||||||||
Sbjct: 29 tttatattagtttacagagggagtact 3
Score = 63.9 bits (32), Expect = 3e-10
Identities = 73/87 (83%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| |||||||||||||| |||||||| || |||| || | ||||||| ||
Sbjct: 5 tactccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacgct 62
Query: 66 cttatattantttacanagggagtact 92
||||||||| ||||| ||||||||||
Sbjct: 63 cttatattagtttacggagggagtact 89
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 5 ctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacac 64
|||||||||||||||||||||||||||| ||||| | ||||| || |||||||||| |
Sbjct: 90 ctactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgc 31
Query: 65 tcttatattantttacanagggagtact 92
|||||||||| |||||| ||||||||||
Sbjct: 30 tcttatattagtttacagagggagtact 3
Score = 89.7 bits (45), Expect = 6e-18
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||||||||||||||| ||||| || ||||||||| | ||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgct 64
Query: 66 cttatattantttacanagggagta 90
||||||||| ||||| ||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 97.6 bits (49), Expect = 2e-20
Identities = 72/81 (88%)
Strand = Plus / Minus
Query: 7 actccctccgtaaactaatataagagtgtttanattactattttantgatctaaacactc 66
|||||||||||||||||||||||||| ||||| || || |||||| |||||| ||| |||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 67 ttatattantttacanaggga 87
|||||||| |||||| |||||
Sbjct: 28 ttatattagtttacaaaggga 8
Score = 46.1 bits (23), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 53 tgatctaaacactcttatattantttacanagggagt 89
|||||||||| ||||||||||| ||||| |||||||
Sbjct: 52 tgatctaaactctcttatattagtttacggagggagt 88
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 97.6 bits (49), Expect = 2e-20
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||| ||||||||||| ||||| ||||||| |||| |||||||||| ||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 66 cttatattantttacanagggagta 90
|||||| || |||||| | ||||||
Sbjct: 65 cttatagtagtttacagacggagta 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 4 tctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaaca 63
|||||||| || |||||||| |||||||| ||||| || |||| || | ||||||||
Sbjct: 91 tctactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacg 32
Query: 64 ctcttatattantttacanagggagta 90
||||||||||| ||||| ||||||||
Sbjct: 31 ctcttatattaatttacggagggagta 5
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||||||||||||||| | ||| || |||| |||| |||||||| | ||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 66 cttatattantttacanagggagta 90
||||||||| |||||| ||||||||
Sbjct: 65 cttatattagtttacagagggagta 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 4 tctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaaca 63
||||||||||| ||||||||||||||||| | ||| || |||| || |||||||| |
Sbjct: 91 tctactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcg 32
Query: 64 ctcttatattantttacanagggagta 90
||||||||||| |||||| ||||||||
Sbjct: 31 ctcttatattagtttacagagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 87.7 bits (44), Expect = 2e-17
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 19 aactaatataagagtgtttanattactattttantgatctaaacactcttatattanttt 78
|||||||||||||| ||||| || |||| |||| |||||||||| ||||||||||| |||
Sbjct: 76 aactaatataagagcgtttagatcactactttagtgatctaaacgctcttatattagttt 17
Query: 79 acanagggagta 90
||| ||||||||
Sbjct: 16 acagagggagta 5
Score = 75.8 bits (38), Expect = 9e-14
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||||||||||||||| ||||| || |||| || |||||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 66 cttatattantttacanagggagtact 92
||||||||| || ||| ||||||||||
Sbjct: 65 cttatattagttcaca-agggagtact 90
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 85.7 bits (43), Expect = 9e-17
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
|||| |||| ||||||||||||||||| |||| || ||||||||| ||| |||||| ||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 66 cttatattantttacanagggagtact 92
||||||||| ||||| ||||||||||
Sbjct: 29 cttatattagtttacggagggagtact 3
Score = 73.8 bits (37), Expect = 4e-13
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||||||||||||||| ||||| | |||| || ||||||||| ||
Sbjct: 5 tactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgct 64
Query: 66 cttatattantttacanagggagta 90
||||||||| |||||| ||| ||||
Sbjct: 65 cttatattagtttacagaggaagta 89
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 85.7 bits (43), Expect = 9e-17
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 9 tccctccgtaaactaatataagagtgtttanattactattttantgatctaaacactctt 68
||||| |||||||||||||||||| |||| | ||||||||| | ||||||| ||||||
Sbjct: 86 tcccttcgtaaactaatataagagcatttagaacactattttagtaatctaaatactctt 27
Query: 69 atattantttacanagggagtac 91
|||||| |||||| |||||||||
Sbjct: 26 atattagtttacagagggagtac 4
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| |||||||||||||||||| |||| ||||||| || || |||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgct 64
Query: 66 cttatattantttac 80
||||||||| |||||
Sbjct: 65 cttatattagtttac 79
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 85.7 bits (43), Expect = 9e-17
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 5 ctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacac 64
|||||||||||||||| |||||||||||||||| || |||| |||| ||||||| || |
Sbjct: 90 ctactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgc 31
Query: 65 tcttatattantttacanagggagtac 91
||||||||| |||||| | |||||||
Sbjct: 30 tcttatatttctttacagaaggagtac 4
Score = 44.1 bits (22), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 55 atctaaacactcttatattantttacanagggagta 90
||||||||||||||||||| ||||| ||||||||
Sbjct: 54 atctaaacactcttatatttctttacggagggagta 89
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 9 tccctccgtaaactaatataagagtgtttanattactattttantgatctaaacactctt 68
|||||||||||||||||||||||| ||||| | ||||| || ||||||||| || ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 69 atattantttacanagggagtactt 93
|||||| |||||| |||||||||||
Sbjct: 68 atattagtttacaaagggagtactt 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 61/75 (81%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
|||||||| |||||||||||||| || |||| || | || |||| | ||||||| ||
Sbjct: 89 tactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgct 30
Query: 66 cttatattantttac 80
||||||||| |||||
Sbjct: 29 cttatattagtttac 15
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 1e-15
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
|||||||||||||||||||||||| || ||||| | ||||| || |||||||||| |
Sbjct: 5 tactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgtt 64
Query: 66 cttatattantttacanagggagta 90
||||||||| |||||| ||||||||
Sbjct: 65 cttatattagtttacagagggagta 89
Score = 75.8 bits (38), Expect = 9e-14
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| |||||||||||||||| ||||| || ||||||||| | ||||||| ||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 66 cttatattantttacanagggagtac 91
|||||||| ||||| |||||||||
Sbjct: 29 tttatattagtttacggagggagtac 4
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 77.8 bits (39), Expect = 2e-14
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 20 actaatataagagtgtttanattactattttantgatctaaacactcttatattanttta 79
||||||||||||| ||||| || ||||||||| ||||||||| ||||||||||| ||||
Sbjct: 64 actaatataagagcgtttagatcactattttaatgatctaaatgctcttatattagttta 123
Query: 80 canagggagta 90
| ||||||||
Sbjct: 124 cggagggagta 134
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||||||||||||||| |||| || | || || |||||||||| ||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 66 cttatatta 74
|||||||||
Sbjct: 74 cttatatta 66
Score = 58.0 bits (29), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacac 64
||||||||| ||||||||||||||||| ||||| | | |||||| ||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttaggtcataattttaatgatctaaacac 63
Score = 54.0 bits (27), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 57 ctaaacactcttatattantttacanagggagtactt 93
|||||| ||||||||||| |||||| |||||||||||
Sbjct: 38 ctaaacgctcttatattagtttacagagggagtactt 2
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 5 ctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacac 64
|||||||||| ||||||||||||||||| ||||| ||||||| || || |||||| |
Sbjct: 4 ctactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgc 63
Query: 65 tcttatattantttacanagggagtactta 94
| |||||||| |||||| |||||||||||
Sbjct: 64 ttttatattagtttacagggggagtactta 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||| | |||||||||||||| || |||| | |||| |||| | |||||||| ||
Sbjct: 89 tactccccctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgct 30
Query: 66 cttatattantttacanagggagta 90
||||||||| |||||| ||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| |||||||||||||||| |||| || |||| |||| ||||||||| |
Sbjct: 89 tactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggt 30
Query: 66 cttatattantttacanagggagtactt 93
||||||||| |||||| ||||| |||||
Sbjct: 29 cttatattagtttacagagggaatactt 2
Score = 54.0 bits (27), Expect = 3e-07
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 9 tccctccgtaaactaatataagagtgtttanattactattttantgatctaaacactctt 68
|||||| |||||||||||||||| |||| || |||| || ||||||||| ||||
Sbjct: 8 tccctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtctt 67
Query: 69 atattantttacanagggagtac 91
|||||| |||||| |||||||||
Sbjct: 68 atattagtttacagagggagtac 90
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 67.9 bits (34), Expect = 2e-11
Identities = 79/96 (82%), Gaps = 7/96 (7%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanatt-------actattttantgatct 58
|||||||||| |||||||||||||||| ||||| | | |||| |||| ||||||
Sbjct: 96 tactccctccttaaactaatataagagcgtttagactttagatcactactttagtgatct 37
Query: 59 aaacactcttatattantttacanagggagtactta 94
||| ||||||||||| |||||| ||||||||||||
Sbjct: 36 aaaagctcttatattagtttacagagggagtactta 1
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagag 32
||||||||| |||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| |||||||||||||| || |||| || ||||||||| | ||||||| ||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactattttaataatctaaatgct 64
Query: 66 cttatattantttacanagggagtac 91
||||||||| |||| |||||||||
Sbjct: 65 cttatattagtttatggagggagtac 90
Score = 65.9 bits (33), Expect = 9e-11
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
|||||||||| |||||||||||||||| |||| |||| || || ||||||||| ||
Sbjct: 89 tactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgct 30
Query: 66 cttatattantttacanagggagta 90
|||||||| |||||| ||||||||
Sbjct: 29 tttatattagtttacagagggagta 5
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||| |||||||||||||||| || |||| |||| |||||||||||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaacact 28
Score = 61.9 bits (31), Expect = 1e-09
Identities = 72/86 (83%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||| ||| |||| |||||| || |||| || |||||||||||||
Sbjct: 5 tactccctccgtaaataaatgtaag--tgtttagatcactaaagtagtgatctaaacact 62
Query: 66 cttatattantttacanagggagtac 91
|||||||| |||||| |||||||||
Sbjct: 63 cttatatttctttacagagggagtac 88
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 65.9 bits (33), Expect = 9e-11
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||||||||||||||| || | || |||| |||| ||||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 66 cttatattantttacanagggagta 90
|||||||| ||||| ||||||||
Sbjct: 65 cttatatttctttacggagggagta 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||| |||||||||| |||| || |||| || |||||| || ||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 66 cttatattantttacanagggagta 90
||||||||| |||||| ||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 65.9 bits (33), Expect = 9e-11
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 5 ctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacac 64
|||||||||||||||||||||||||||| |||| || |||| ||| ||||||||| |
Sbjct: 88 ctactccctccgtaaactaatataagagcatttagatcacta-cttagtgatctaaatgc 30
Query: 65 tcttatattantttacanagg 85
| |||||||| |||||| |||
Sbjct: 29 ttttatattagtttacagagg 9
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 16 gtaaactaatataagagtgtttanattactattttantgatctaaacactcttatatt 73
|||||| |||||||||| ||||| || |||| |||| ||||||| |||||||||||||
Sbjct: 15 gtaaacaaatataagagcgtttagatcactactttagtgatctagacactcttatatt 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 62/76 (81%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||| ||||| ||| ||||||||||||| || || |||| || |||||||||| ||
Sbjct: 89 tactcactccgcaaagaaatataagagtgtctagatcactaaagtagtgatctaaacgct 30
Query: 66 cttatattantttaca 81
|||||||| ||||||
Sbjct: 29 cttatatttgtttaca 14
>RF00906;MIR1122;EU096089.1/23929-24021 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 60.0 bits (30), Expect = 5e-09
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
|||||||||||||||||||||||| | | |||| | | ||||||| | || |||| ||
Sbjct: 89 tactccctccgtaaactaatataaaattatttaaaacattattttagtaatttaaatgct 30
Query: 66 cttatattantttacanagggagtac 91
|||||||| |||||| |||||||||
Sbjct: 29 tttatattagtttacagagggagtac 4
Score = 44.1 bits (22), Expect = 3e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattacta 46
||||||||| |||||||||||||| || |||| |||||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttaaattacta 45
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| |||| |||||||||| |||| || |||| |||| || ||||||| ||
Sbjct: 89 tactccctctataaagaaatataagagcatttagataactactttagtgctctaaacgct 30
Query: 66 cttatattantttacanagggagtactta 94
|||||||| ||||| ||||||||||||
Sbjct: 29 cttatatttctttaccgagggagtactta 1
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||||||||||||||| |||| || |||| ||| |||||||||| ||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcacta-cttaatgatctaaacgct 30
Query: 66 cttatattanttta 79
|||||||| ||||
Sbjct: 29 tttatattagttta 16
Score = 56.0 bits (28), Expect = 8e-08
Identities = 73/88 (82%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 ctactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacac 64
||||||||| | ||||||||||||| || ||||| || | || | | ||||||||| |
Sbjct: 4 ctactcccttcataaactaatataaaagcgtttagatcattaagt-agtgatctaaatgc 62
Query: 65 tcttatattantttacanagggagtact 92
|||||||||| |||||| ||||||||||
Sbjct: 63 tcttatattagtttacagagggagtact 90
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 56.0 bits (28), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 53 tgatctaaacactcttatattantttacanagggagta 90
|||||||||| ||||||||||| |||||| ||||||||
Sbjct: 55 tgatctaaacgctcttatattattttacatagggagta 92
>RF00906;MIR1122;AY853252.1/36161-36096 4513:Hordeum vulgare
Length = 66
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 ctactccctccgtaaactaatataagag 32
||||||||||||||||||||||||||||
Sbjct: 63 ctactccctccgtaaactaatataagag 36
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagag 32
||||||||| |||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagag 31
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgttt 37
||||||||| ||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgttt 36
Score = 52.0 bits (26), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 59 aaacactcttatattantttacanagggagta 90
|||||||||||||||| |||||| ||||||||
Sbjct: 36 aaacactcttatattagtttacagagggagta 5
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagag 32
||||||||| |||||||||||||||||
Sbjct: 74 tactccctcggtaaactaatataagag 48
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 43 actattttantgatctaaacactcttatattantttacanaggg 86
||||||||| ||||||||| ||||||||||| |||||| ||||
Sbjct: 52 actattttagtgatctaaatgctcttatattagtttacagaggg 9
Score = 50.1 bits (25), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 59 aaacactcttatattantttacanagggagtactt 93
|||| ||||||||||| |||||| |||||||||||
Sbjct: 65 aaacgctcttatattagtttacagagggagtactt 99
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 74/90 (82%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactatt--ttantgatctaaaca 63
||||||||| |||||||||||||||| |||| || |||| | ||| |||||||||
Sbjct: 91 tactccctctgtaaactaatataagaccttttagatcactactacttagtgatctaaaag 32
Query: 64 ctcttatattantttacanagggagtactt 93
|||||||||| |||||| ||||| |||||
Sbjct: 31 gtcttatattagtttacagagggaatactt 2
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 53 tgatctaaacactcttatattantttacanagggagtactt 93
|||||||||| |||||||||| |||||| |||||||||||
Sbjct: 46 tgatctaaacgctcttatatttctttacagagggagtactt 86
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||||||||| |||||||||| ||||| | |||| || | |||||| ||| ||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtaaactaatataaga 31
||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtaaactaatataaga 30
Score = 50.1 bits (25), Expect = 5e-06
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
|||||||||| |||||||||||||||| |||| | |||| || | | ||||||| |
Sbjct: 89 tactccctccataaactaatataagagcatttagaacactacttcagtaatctaaatgtt 30
Query: 66 cttatattantttacanagggagta 90
||||||||| ||||| ||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 6 tactccctccgtaaactaatataagagtgtttanattactattttantgatctaaacact 65
||||||||| ||||| ||||||||| |||| || |||| |||| ||||||||||| |
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacatt 30
Query: 66 cttatatt 73
||||||||
Sbjct: 29 cttatatt 22
