miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AC096688.4/11614-11485 39947:Oryza sativa Japonica
           Group
          Length = 130

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 137 acaggcaaatcatccttggctatcgaagatggcctcttac 176
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  acaggcaaatcatccttggctatcgaagatggcctcttac 128





>RF00865;MIR169_5;ABXC01000010.1/150949-151088 4558:Sorghum bicolor
           (sorghum)
          Length = 140

 Score = 63.9 bits (32), Expect = 9e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 137 acaggcaaatcatccttggctatcgaagatggcctc 172
           |||||||||||||||||||||||| |||||||||||
Sbjct: 99  acaggcaaatcatccttggctatcaaagatggcctc 134





>RF00645;MIR169_2;ABXC01000010.1/151081-150955 4558:Sorghum bicolor
           (sorghum)
          Length = 127

 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 137 acaggcaaatcatccttggctatcgaagatggcct 171
           |||||||||||||||||||||||| ||||||||||
Sbjct: 35  acaggcaaatcatccttggctatcaaagatggcct 1





>RF00865;MIR169_5;ABXC01000010.1/151290-151438 4558:Sorghum bicolor
           (sorghum)
          Length = 149

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 137 acaggcaaatcatccttggcta 158
           ||||||||||||||||||||||
Sbjct: 108 acaggcaaatcatccttggcta 129





>RF00645;MIR169_2;ABXC01000010.1/151431-151296 4558:Sorghum bicolor
           (sorghum)
          Length = 136

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 137 acaggcaaatcatccttggcta 158
           ||||||||||||||||||||||
Sbjct: 35  acaggcaaatcatccttggcta 14