miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01058;MIR806;AAAA02032712.1/19270-19031 39946:Oryza sativa Indica
Group
Length = 240
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 gcttattttgggatggagggagt 77
|||||||||||||||||||||||
Sbjct: 216 gcttattttgggatggagggagt 238
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 13 tactctctccatcccaaaataagcatctttgatttagta 51
||||| ||||||||||||||||| |||||| |||||||
Sbjct: 101 tactccctccatcccaaaataagtgtctttgctttagta 63
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 cttattttgggatggagggagt 77
||||||||||||||||||||||
Sbjct: 79 cttattttgggatggagggagt 100
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 cttattttgggatggagggagtg 78
|||||||||||||||||||||||
Sbjct: 66 cttattttgggatggagggagtg 88
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 cttattttgggatggagggagt 77
||||||||||||||||||||||
Sbjct: 79 cttattttgggatggagggagt 100
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 cttattttgggatggagggagt 77
||||||||||||||||||||||
Sbjct: 79 cttattttgggatggagggagt 100
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 cttattttgggatggagggagt 77
||||||||||||||||||||||
Sbjct: 86 cttattttgggatggagggagt 107
>RF00906;MIR1122;AP008213.1/29571801-29571647 39947:Oryza sativa
Japonica Group
Length = 155
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactctctccatcccaaaata 33
||||||||||||||||||||||
Sbjct: 4 atactctctccatcccaaaata 25
>RF00906;MIR1122;AACV01019101.1/4942-4817 39947:Oryza sativa
Japonica Group
Length = 126
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 cttattttgggatggagggagt 77
||||||||||||||||||||||
Sbjct: 100 cttattttgggatggagggagt 121
