miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 12 gtactcccttcgtcccataatgtaagatgttttttgacactacactacagtcagaaaatg 71
||||||||| ||||||||||||||||| ||||||||| ||||||||| |||| ||| ||
Sbjct: 4 gtactccctccgtcccataatgtaagaggttttttgatactacactagtgtcaaaaagtg 63
Query: 72 tcttacattacgggacagagggagtag 98
|||||||||| ||| ||||||||||
Sbjct: 64 tcttacattataggatggagggagtag 90
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgacactacactacagtcagaaaatgt 72
|||||||| ||||||||||||||||| | ||||||||||||||||| || |||| ||
Sbjct: 5 tactccctccgtcccataatgtaagacgctttttgacactacactagtgtggaaaaacgt 64
Query: 73 cttacattacgggacagagggagtagt 99
||| |||| |||||||||||||||||
Sbjct: 65 tttatattatgggacagagggagtagt 91
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 75.8 bits (38), Expect = 1e-13
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgacactacactacagtcagaaaatgt 72
|||||||| |||||||||||||| || ||||||||||||||||||| |||| |||| ||
Sbjct: 107 tactccctccgtcccataatgtaggacgttttttgacactacactagtgtcaaaaaacgt 48
Query: 73 cttaca 78
||||||
Sbjct: 47 cttaca 42
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgac 49
|||||||| ||||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgtcccataatgtaagacgttttttgac 41
Score = 52.0 bits (26), Expect = 2e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 32 tgtaagatgttttttgacactacactacagtcagaaaatgtcttacattacgggacagag 91
||||||| |||||||||||||| || |||| |||| ||| ||||||| ||||| |||
Sbjct: 42 tgtaagacgttttttgacactagtgtagtgtcaaaaaacgtcctacattatgggacggag 101
Query: 92 ggagtagtta 101
||||||||||
Sbjct: 102 ggagtagtta 111
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 57 tacagtcagaaaatgtcttacattacgggacagagggagta 97
|||||||| |||| ||||||||||| ||||| |||||||||
Sbjct: 45 tacagtcaaaaaacgtcttacattatgggacggagggagta 5
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgacactacacta 58
|||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 tactaccttcgtcccataatgtaagacgttttttgacactacacta 50
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 22 cgtcccataatgtaagatgttttttgacacta 53
||||||||||||||||| ||||||||||||||
Sbjct: 87 cgtcccataatgtaagacgttttttgacacta 56
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 12 gtactcccttcgtcccataatgtaagatgttttttgacactac 54
||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 90 gtactccctccgtcccataatgtaagacgttttttgacactac 48
Score = 58.0 bits (29), Expect = 2e-08
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgacactacactacagtcagaaaatgt 72
|||||||| ||||||||||| || |||||||||||||| | || |||| |||| ||
Sbjct: 5 tactccctccgtcccataatataggatgttttttgacataagcgtagtgtcaaaaaacgt 64
Query: 73 cttacattacgggacagagggagta 97
||||||||| ||||| |||||||||
Sbjct: 65 cttacattatgggacggagggagta 89
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 69.9 bits (35), Expect = 6e-12
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 12 gtactcccttcgtcccataatgtaagatgttttttgacactacactacagtc-agaaaat 70
||||||||| ||||||||||||||||| |||||| | ||||||||| ||| | ||||
Sbjct: 91 gtactccctccgtcccataatgtaagacattttttaaaactacactaatgtcaaaaaaac 32
Query: 71 gtcttacattacgggacagagggagta 97
||||||||||| | |||||||||||||
Sbjct: 31 gtcttacattatgagacagagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 66 aaaatgtcttacattacgggacagagggagta 97
|||||||||||||||| ||||| |||||||||
Sbjct: 59 aaaatgtcttacattatgggacggagggagta 90
>RF00906;MIR1122;DQ247832.1/803-901 4487:Aegilops searsii
Length = 99
Score = 69.9 bits (35), Expect = 6e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgacactacacta 58
|||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 5 tactaccttcgtcccataatgtaagacgttttntgacactacacta 50
Score = 50.1 bits (25), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 22 cgtcccataatgtaagatgttttttgacacta 53
||||||||||||||||| ||||| ||||||||
Sbjct: 87 cgtcccataatgtaagacgttttntgacacta 56
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 22 cgtcccataatgtaagatgttttttgacacta 53
||||||||||||||||| ||||||||||||||
Sbjct: 58 cgtcccataatgtaagacgttttttgacacta 27
>RF00906;MIR1122;CT009735.1/55205-55297 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 10 ttgtactcccttcgtcccataatgtaagatgttttttgacactacactacagtcagaaaa 69
||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||| |||
Sbjct: 92 ttgtactccctccgtcccataatataagagcgtttttgacactgcactagtgtcaaaaac 33
Query: 70 tgtcttacattacgggacagagggagtagtt 100
||||| |||| ||||| |||||| |||||
Sbjct: 32 gctcttatattatgggacggagggaatagtt 2
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 13 tactcccttcgtcccataatgtaagatg-ttttttgacactacacta 58
|||| ||| ||||||||||||||||| | ||||||||||||||||||
Sbjct: 5 tacttcctccgtcccataatgtaagacgtttttttgacactacacta 51
>RF00906;MIR1122;EU660903.1/8169-8251 4565:Triticum aestivum
(bread wheat)
Length = 83
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgacacta 53
|||||||| ||||||||||||| || ||||||||||||||
Sbjct: 5 tactccctcagtcccataatgtaggacgttttttgacacta 45
>RF00906;MIR1122;FJ711031.1/1293-1203 4586:Psathyrostachys juncea
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgacacta 53
|||||||| |||||||||| ||||| ||||||||||||||
Sbjct: 87 tactccctctgtcccataatataagacgttttttgacacta 47
Score = 46.1 bits (23), Expect = 9e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 32 tgtaagatgttttttgacactacactacagtcagaaaatgtcttacattacgggacagag 91
||||||| ||||||||||||| || |||| |||| |||||| |||| |||||||||
Sbjct: 22 tgtaagacgttttttgacactgtcatagtgtcaaaaaacgtcttatattatgggacagag 81
Query: 92 ggagtag 98
|||||||
Sbjct: 82 ggagtag 88
>RF00906;MIR1122;AY013246.1/69877-69969 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 11 tgtactcccttcgtcccataatgtaagatgttttttgacactacactacagtcagaaaat 70
|||||||||| ||| |||||| ||||| ||||||||||||||||| |||| |||||
Sbjct: 3 tgtactccctctgtctcataatataagagcgtttttgacactacactaatgtca-aaaat 61
Query: 71 g-tcttacattacgggacagagggagtag 98
| ||||| |||| ||||| ||||||||||
Sbjct: 62 gctcttatattatgggacggagggagtag 90
>RF00906;MIR1122;EU835198.1/120580-120672 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgacactacac 56
|||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 89 tactccctccgtcccataatataagaacatttttgacactacac 46
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 23 gtcccataatgtaagatgttttttgacacta 53
||||||||||||| ||||| |||||||||||
Sbjct: 15 gtcccataatgtaggatgtcttttgacacta 45
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 13 tactcccttcgtcccataatgtaagatgtttttt 46
|||| ||| ||||||||||||||||| |||||||
Sbjct: 91 tacttcctccgtcccataatgtaagacgtttttt 58
>RF00906;MIR1122;FJ711046.1/1205-1295 220462:Leymus arenarius
Length = 91
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 23 gtcccataatgtaagatgttttttgacacta 53
|||||||||| ||||| ||||||||||||||
Sbjct: 15 gtcccataatataagacgttttttgacacta 45
>RF00906;MIR1122;FJ436986.1/65183-65072 37682:Aegilops tauschii
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 61 gtcagaaaatgtcttacattacgggacagagggagtagt 99
|||| ||||||||||||||| | |||||||||||||||
Sbjct: 41 gtcaaaaaatgtcttacattttgagacagagggagtagt 3
>RF00906;MIR1122;AP004120.3/28200-28332 39947:Oryza sativa
Japonica Group
Length = 133
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gtactcccttcgtcccataatgt 34
|||||||||||||||||||||||
Sbjct: 4 gtactcccttcgtcccataatgt 26
>RF00906;MIR1122;AACV01005638.1/19-151 39947:Oryza sativa Japonica
Group
Length = 133
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gtactcccttcgtcccataatgt 34
|||||||||||||||||||||||
Sbjct: 4 gtactcccttcgtcccataatgt 26
>RF01058;MIR806;AAAA02014047.1/6193-6435 39946:Oryza sativa Indica
Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 gtactcccttcgtcccataatgtaag 37
||||||||||||||||||||| ||||
Sbjct: 1 gtactcccttcgtcccataatataag 26
>RF00906;MIR1122;AF343492.1/1298-1206 58531:Aegilops speltoides
subsp. speltoides
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 13 tactcccttcgtcccataatgtaagatgttttttgacactacacta 58
|||||||| ||||||||||| ||| | |||||||||||||||||
Sbjct: 89 tactccctccgtcccataatataaaagcgtttttgacactacacta 44
>RF00906;MIR1122;AAAA02029602.1/21868-22024 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 gtactcccttcgtcccataatgtaag 37
||||||||||||||||||||| ||||
Sbjct: 4 gtactcccttcgtcccataatataag 29
>RF00906;MIR1122;AP008214.1/337131-337286 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtactcccttcgtcccataat 32
||||||||||||||||||||||
Sbjct: 3 tgtactcccttcgtcccataat 24
