miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 167 bits (84), Expect = 5e-41
Identities = 117/128 (91%)
Strand = Plus / Plus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
||||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 64
Query: 66 cattttaatattagatacatccgtatctagataaatctaagacaagaattttaggacgga 125
| ||||| |||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct: 65 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttggaacgga 124
Query: 126 gggagtat 133
|| |||||
Sbjct: 125 ggaagtat 132
Score = 83.8 bits (42), Expect = 6e-16
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 79 gatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct: 58 gatacatccgtatttagacaaatctaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 151 bits (76), Expect = 3e-36
Identities = 118/132 (89%)
Strand = Plus / Plus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtc 64
||||||| || ||| |||||||||| |||||||||| |||||||| ||||||| || ||
Sbjct: 4 atactccttctgtcccaaaattcttgtcttagatttttctaaatagggatgtatcaactc 63
Query: 65 acattttaatattagatacatccgtatctagataaatctaagacaagaattttaggacgg 124
|| ||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct: 64 acgttttagtattagatacatccatatctagacaaatctaagacaagaattttgggacgg 123
Query: 125 agggagtattta 136
||||||||||||
Sbjct: 124 agggagtattta 135
Score = 67.9 bits (34), Expect = 3e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtat 58
|||||||||||||| |||||||||| ||||||||||||||| ||| |||||||
Sbjct: 132 atactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtat 79
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 79 gatacatccgtatctagataaatctaagacaagaattttaggacggagggagtat 133
||||||||| ||| |||| |||||||||||||||||||| |||| || |||||||
Sbjct: 58 gatacatccctatttagaaaaatctaagacaagaattttgggacagaaggagtat 4
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 149 bits (75), Expect = 1e-35
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
||||||||| ||| |||||||||| ||||||||||||||| |||| ||||||| ||||||
Sbjct: 5 tactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatcaagtca 64
Query: 66 cattttaatattagatacatccgtatctagataaatctaagacaagaattttaggacgga 125
|||||| ||||||||||||| ||||||||| |||||||||||||||| ||| |||| ||
Sbjct: 65 cattttcgtattagatacatctgtatctagacaaatctaagacaagaaatttgggacaga 124
Query: 126 gggagta 132
|||||||
Sbjct: 125 gggagta 131
Score = 83.8 bits (42), Expect = 6e-16
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 79 gatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
|||||||||||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct: 58 gatacatccgtatctagacaaatctaagacaagaattttgggaccgagggagta 5
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 143 bits (72), Expect = 7e-34
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
|||||||||| || |||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtatgaagtca 72
Query: 66 cattttaatattagatacatccgtatctagataaatctaagacaagaattttaggacgga 125
|||||| ||||| |||||| ||||||||| |||| ||||||||||||||| ||||||
Sbjct: 71 tattttagtattaaatacatatgtatctagacaaatgtaagacaagaattttgagacgga 12
Query: 126 gggagtat 133
||||||||
Sbjct: 11 gggagtat 4
Score = 87.7 bits (44), Expect = 4e-17
Identities = 107/128 (83%)
Strand = Plus / Plus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtc 64
||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||| | |
Sbjct: 4 atactccctccgtctcaaaattcttgtcttacatttgtctagatacatatgtatttaata 63
Query: 65 acattttaatattagatacatccgtatctagataaatctaagacaagaattttaggacgg 124
| || | | |||||||||||| |||| |||||||||||||||||||| ||| ||
Sbjct: 64 ctaaaatatgacttcatacatccgtatttagacaaatctaagacaagaattttgggatgg 123
Query: 125 agggagta 132
||||||||
Sbjct: 124 agggagta 131
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 131 bits (66), Expect = 3e-30
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 3 ttatactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaag 62
||||||||||||| |||||||||||| ||||| |||| |||||||| ||||||| ||
Sbjct: 2 ttatactccctccatctcaaaattctggtcttaaatttctctaaatatggatgtatctag 61
Query: 63 tcacattttaatattagatacatccgtatctagataaatctaagacaagaattttaggac 122
|||| ||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 62 tcacgttttagtgttagatacatccgtatctagataaatcctagacaagaattttgggac 121
Query: 123 ggagggagta 132
||||| ||||
Sbjct: 122 ggaggtagta 131
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagtat 133
||||||||||| ||| |||| |||| |||||| |||||||| || |||||||||||
Sbjct: 60 tagatacatccatatttagagaaatttaagaccagaattttgagatggagggagtat 4
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 129 bits (65), Expect = 1e-29
Identities = 115/132 (87%)
Strand = Plus / Plus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtc 64
|||||||||||||| |||||||||| || ||||||||||||||||| ||||||| ||||
Sbjct: 4 atactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctagtc 63
Query: 65 acattttaatattagatacatccgtatctagataaatctaagacaagaattttaggacgg 124
| ||||| | ||||| |||| | |||||| | ||||||||||| |||||||| ||||||
Sbjct: 64 atgttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggacgg 123
Query: 125 agggagtattta 136
||||||||||||
Sbjct: 124 agggagtattta 135
Score = 85.7 bits (43), Expect = 1e-16
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagtattt 135
||||||||||||||| |||| ||||||| |||||||||||| |||||||||||||||||
Sbjct: 60 tagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagtattt 2
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 119 bits (60), Expect = 1e-26
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
||||||||||||| ||||||| || ||||| ||||||||||||| ||||||| ||| |
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtta 64
Query: 66 cattttaatattagatacatccgtatctagataaatctaagacaagaattttaggacgga 125
||||||| | ||||||||||||||||||| | |||| ||||||||||||||| ||| |||
Sbjct: 65 cattttagtgttagatacatccgtatctaaacaaatgtaagacaagaattttgggatgga 124
Query: 126 ggga 129
||||
Sbjct: 125 ggga 128
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 80 atacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
|||||||| ||| |||| |||| |||||||| |||||| ||||||||||||||
Sbjct: 57 atacatccatatttagacaaatttaagacaacaattttgggacggagggagta 5
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 111 bits (56), Expect = 2e-24
Identities = 104/120 (86%)
Strand = Plus / Minus
Query: 10 ccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtcacatt 69
||||||||| |||||||||| ||||| |||||||||||||| ||||||| ||| |||||
Sbjct: 127 ccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatctagttacatt 68
Query: 70 ttaatattagatacatccgtatctagataaatctaagacaagaattttaggacggaggga 129
||| | ||||||||||| |||||| | |||| ||||||||||||||| ||| |||||||
Sbjct: 67 ttagtgttagatacatctttatctaaacaaatgtaagacaagaattttgggatggaggga 8
Score = 71.9 bits (36), Expect = 2e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggaggg 128
||||||||||||||| |||| |||| ||||||||||||||| ||||||||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagacaagaattttgggacggaggg 127
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 109 bits (55), Expect = 1e-23
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 22 aaattcttctcttagatttgtctaaatacagatgtattaagtcacattttaatattagat 81
|||||||| ||||| ||||||||||| || |||||| ||||||| |||| ||||||||
Sbjct: 21 aaattcttgtcttaaatttgtctaaagacgaatgtatcaagtcacgtttttgtattagat 80
Query: 82 acatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||||||||||| ||| ||| ||||||||||| ||||||||||||||
Sbjct: 81 acatccgtatctagacaaagctacaacaagaattttgggacggagggagta 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 79 gatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||| ||| | |||| |||| |||||||||||||| ||||||||| |||||
Sbjct: 58 gatacattcgtctttagacaaatttaagacaagaatttcaggacggagcgagta 5
Score = 50.1 bits (25), Expect = 8e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtat 58
||||||||||||| |||||||||| | ||| |||||||| |||| |||||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtat 79
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 99.6 bits (50), Expect = 9e-21
Identities = 114/134 (85%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 3 ttatactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaag 62
||||||||||||||| |||||||||| |||||||||||| || ||| |||||| ||
Sbjct: 2 ttatactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctag 61
Query: 63 tcacattttaatatt-agatacatccgtatctagataaatctaagacaagaattttagga 121
| | ||||| |||| ||||||||| | |||||| ||| ||||||||||||||||||||
Sbjct: 62 ttaagttttagtatttagatacatcaatttctagacaaagctaagacaagaattttagga 121
Query: 122 cggagggagtattt 135
||||||||||||||
Sbjct: 122 cggagggagtattt 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagtat 133
||||||||| | |||||| | |||||||||||||||||||| | |||||||||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaagaattttggaacggagggagtat 4
Score = 50.1 bits (25), Expect = 8e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtcta 45
|||||||||||||| ||||||||| |||||| ||||||||
Sbjct: 133 atactccctccgtcctaaaattcttgtcttagctttgtcta 93
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 91.7 bits (46), Expect = 2e-18
Identities = 113/134 (84%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 3 ttatactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaag 62
||||||| ||||||| |||||||||| |||||||||||| || ||| |||||| ||
Sbjct: 135 ttatactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctag 76
Query: 63 tcacattttaatatt-agatacatccgtatctagataaatctaagacaagaattttagga 121
| | ||||| |||| ||||||||| | |||||| ||| ||||||||||||||||||||
Sbjct: 75 ttaagttttagtatttagatacatcaatttctagacaaagctaagacaagaattttagga 16
Query: 122 cggagggagtattt 135
||||||||||||||
Sbjct: 15 cggagggagtattt 2
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagtat 133
||||||||| | |||||| | |||||||||||||||||||| | ||||||| |||||
Sbjct: 77 tagatacattcatatctaaacaaatctaagacaagaattttggaacggaggtagtat 133
Score = 50.1 bits (25), Expect = 8e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtcta 45
|||||||||||||| ||||||||| |||||| ||||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagctttgtcta 44
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 89.7 bits (45), Expect = 9e-18
Identities = 109/129 (84%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
||||||||||||||||||||| || | || ||||||||| ||| ||||||| ||| |
Sbjct: 5 tactccctccgtctcaaaattattgttttgaatttgtctagatatggatgtatctagtta 64
Query: 66 cattttaatatt-agatacatccgtatctagataaatctaagacaagaattttaggacgg 124
||||||| |||| | || ||||| |||||| | | |||||||||||||||||| ||||||
Sbjct: 65 cattttagtatttaaatgcatccatatctaaaaacatctaagacaagaattttgggacgg 124
Query: 125 agggagtat 133
|||||||||
Sbjct: 125 agggagtat 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 5 atactccctccgtctcaaaattcttctcttagat 38
|||||||||||||| |||||||||| ||||||||
Sbjct: 133 atactccctccgtcccaaaattcttgtcttagat 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||||||| |||||||| |||| || |||| |||||| |||||||||||||
Sbjct: 60 tagatacatccatatctagacaaattcaaaacaataattttgagacggagggagta 5
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 81.8 bits (41), Expect = 2e-15
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 75 attagatacatccgtatctagataaatctaagacaagaattttaggacggagggagtatt 134
||||||||||| | |||||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct: 62 attagatacattcatatctagacaaatctaagacaagaattttatgacagagggagtatt 3
Query: 135 t 135
|
Sbjct: 2 t 2
Score = 71.9 bits (36), Expect = 2e-12
Identities = 109/132 (82%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtc 64
|||||||||| ||| ||||||||| ||||||||||||||| ||| |||||| | ||
Sbjct: 4 atactccctctgtcataaaattcttgtcttagatttgtctagatatgaatgtatctaatc 63
Query: 65 acattttaatatt-agatacatccgtatctagataaatctaagacaagaattttaggacg 123
|| |||| | ||| ||||||| || | | |||| ||| ||||||||||| ||||| ||||
Sbjct: 64 acgttttgacatttagatacaaccatttttagacaaacctaagacaagatttttaagacg 123
Query: 124 gagggagtattt 135
||||||||||||
Sbjct: 124 gagggagtattt 135
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 89 tatctagataaatctaagacaagaattttaggacggagggagtat 133
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 48 tatctagacaaatctaagacaagaattttaggacggagggagtat 4
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtcta 45
|||||||||||||| ||||||||| |||||||||||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagatttgtcta 44
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 76 ttagatacatccgtatctagataaatctaagacaagaattttaggacggag 126
|||||||||| | | |||||||||| |||| ||||||||||| |||||||
Sbjct: 63 ttagatacattcatttctagataaacctaatacaagaattttgagacggag 113
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 79.8 bits (40), Expect = 9e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 85 tccgtatctagataaatctaagacaagaattttaggacggagggagta 132
|||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 54 tccgtatctaaataaatctaagacaagaattttgggacggagggagta 101
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 82 acatccgtatctagataaatctaagacaagaatttt 117
||||||||||||||||||||||||||||||||||||
Sbjct: 54 acatccgtatctagataaatctaagacaagaatttt 19
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 6 tactccctccgtctcaaaattcttctcttagattt 40
||||||||||||| |||||||||| ||||||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagattt 67
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 79.8 bits (40), Expect = 9e-15
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 76 ttagatacatccgtatctagataaatctaagacaagaattttaggacggagg 127
|||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 44 ttagatacatccgtatctagataaatctaagacaagctttttgggacggagg 95
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 79.8 bits (40), Expect = 9e-15
Identities = 107/128 (83%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
||||||||||||| |||||||||| ||||| ||||||||| ||| |||||| |||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctagtca 64
Query: 66 cattttaata-ttagatacatccgtatctagataaatctaagacaagaattttaggacgg 124
| ||||| || || |||||||| | |||| | ||| ||||||||||||||| ||||||
Sbjct: 65 cgttttagtattttgatacatctatttctaaacaaacttaagacaagaattttgggacgg 124
Query: 125 agggagta 132
||||||||
Sbjct: 125 agggagta 132
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||||| | |||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 60 tagatacattcatatctagacaaatgtaagacaagaattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 tactccctccgtctcaaaattcttctctta 35
||||||||||||| |||||||||| |||||
Sbjct: 132 tactccctccgtcccaaaattcttgtctta 103
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 75.8 bits (38), Expect = 1e-13
Identities = 97/114 (85%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 20 caaaattcttctcttagatttgtctaaatacagatgtattaagtcacattttaata-tta 78
|||||||||| ||||||||||||||||||| |||||| ||||| ||||| || |||
Sbjct: 19 caaaattcttgtcttagatttgtctaaatatgaatgtatctagtcatgttttagtattta 78
Query: 79 gatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||||| | |||||| ||| ||||||||||||||| |||||||| |||||
Sbjct: 79 gatacatccatttctaga-caatttaagacaagaattttgggacggagagagta 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggac 122
||||||||| | ||| |||| |||||||||||||||||||| ||||
Sbjct: 60 tagatacattcatatttagacaaatctaagacaagaattttgggac 15
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 73.8 bits (37), Expect = 5e-13
Identities = 108/129 (83%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
|||||||||||||||||||||||| |||| |||||| || |||| |||||| |||||
Sbjct: 5 tactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatctagtca 64
Query: 66 cattttaatatt-agatacatccgtatctagataaatctaagacaagaattttaggacgg 124
|||| | |||| |||||||||| |||||| ||| |||||||||||||||| | | ||
Sbjct: 65 aattt-agtatttagatacatccagttctagacaaagctaagacaagaattttggaatgg 123
Query: 125 agggagtat 133
|||||||||
Sbjct: 124 agggagtat 132
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||||| |||||||| | |||| |||| |||||||||| |||||||||||||
Sbjct: 60 tagatacattcgtatctaaacaaatataaggcaagaattttgagacggagggagta 5
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 69.9 bits (35), Expect = 8e-12
Identities = 104/127 (81%)
Strand = Plus / Minus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
|||||||||||| |||| | ||| |||| |||||||||| |||| ||||||| || |
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctagact 72
Query: 66 cattttaatattagatacatccgtatctagataaatctaagacaagaattttaggacgga 125
||||||| | |||||| |||||||||||| |||||||||||||| | || | |||||
Sbjct: 71 cattttagtgctagatatctccgtatctagacaaatctaagacaagtaattcggaacgga 12
Query: 126 gggagta 132
|||||||
Sbjct: 11 gggagta 5
Score = 63.9 bits (32), Expect = 5e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
|||||||||||||||||||| ||||| |||||||| | ||| | ||||||||||||
Sbjct: 76 tagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 69.9 bits (35), Expect = 8e-12
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 80 atacatccgtatctagataaatctaagacaagaattttaggacggagggagtatt 134
|||||| | |||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 57 atacattcatatctagacaaatctaagacaagaagtttgggacggagggagtatt 3
Score = 65.9 bits (33), Expect = 1e-10
Identities = 111/136 (81%), Gaps = 7/136 (5%)
Strand = Plus / Plus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtc 64
|||||||||||||| |||| ||||| ||||||||||||||| ||| |||||| ||||
Sbjct: 4 atactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtatgtagtc 63
Query: 65 acattttaata-ttaga------tacatccgtatctagataaatctaagacaagaatttt 117
|| |||| || ||||| ||||||| | | |||| ||| ||||||||||||||||
Sbjct: 64 acgttttggtatttagatacacctacatccatttatagacaaacctaagacaagaatttt 123
Query: 118 aggacggagggagtat 133
|||||||||||||||
Sbjct: 124 gggacggagggagtat 139
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 2 cttatactccctccgtctcaaaattcttctcttagatttgtcta 45
||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct: 142 cttatactccctccgtcccaaaattcttgtcttaggtttgtcta 99
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 67.9 bits (34), Expect = 3e-11
Identities = 107/130 (82%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
|||||| |||||| |||||||||| ||||| ||||||||| ||| |||||| |||||
Sbjct: 5 tactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatctagtca 64
Query: 66 cattttaatatt-agatacatccgtatctagataaatctaagacaagaattttaggacgg 124
|||| |||| |||||||||| | | |||| || |||||||||||||||| | ||||
Sbjct: 65 tggtttagtatttagatacatccatgtgtagacaatgctaagacaagaattttggaacgg 124
Query: 125 agggagtatt 134
||||||||||
Sbjct: 125 agggagtatt 134
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||||| | ||| |||| |||| ||||||||||||||| ||||||| ||||||
Sbjct: 60 tagatacattcatatatagacaaatttaagacaagaattttgggacggaaggagta 5
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 67.9 bits (34), Expect = 3e-11
Identities = 107/130 (82%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaatacagatgtattaagtca 65
||||||||||||| ||||||| || |||||||||||| || ||| |||||| |||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctagtca 64
Query: 66 cattttaat-attagatacatccgtatctagataaatctaagacaagaattttaggacgg 124
||||| | |||||||||||| | |||| | ||| ||||||||||||||| |||||
Sbjct: 65 agttttagtaattagatacatctatttctaaacaaagttaagacaagaattttgggacga 124
Query: 125 agggagtatt 134
||||||||||
Sbjct: 125 agggagtatt 134
Score = 63.9 bits (32), Expect = 5e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||||| | |||||| | ||||||||||||| |||||| ||||||||||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaataattttgggacggagggagta 5
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 76 ttagatacatccgtatctagataaatctaagacaagaattttaggacggagggagtat 133
|||||||||||||||||||||||||||| ||||||| || | ||||||||| |||||
Sbjct: 61 ttagatacatccgtatctagataaatcttagacaagctttctgggacggaggtagtat 4
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 88 gtatctagataaatctaagacaagaattttaggacggagggagta 132
||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct: 53 gtatctagacaaatctaagacaagaattttaagatggagggagta 97
Score = 60.0 bits (30), Expect = 8e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 6 tactccctccgtctcaaaattcttctcttagatttgtctaaataca 51
|||||||||| ||| ||||||||| ||||||||||||||| |||||
Sbjct: 97 tactccctccatcttaaaattcttgtcttagatttgtctagataca 52
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 89 tatctagataaatctaagacaagaattttaggacggagggagtattt 135
|||| ||| |||||||||||||||||||| | ||| |||||||||||
Sbjct: 48 tatcaagacaaatctaagacaagaattttggaacgaagggagtattt 2
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 5 atactccctccgtctcaaaattcttctcttagatttgtct 44
||||||||| ||| |||||||||| ||||||||||||||
Sbjct: 4 atactcccttcgttccaaaattcttgtcttagatttgtct 43
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 63.9 bits (32), Expect = 5e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagataaatctaagacaagaattttaggacggagggagta 132
|||||||||||||||||||| |||| ||||||||| | || || ||||||||||||
Sbjct: 60 tagatacatccgtatctagacaaatttaagacaagtaattcagaacggagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 31 tcttagatttgtctaaatacagatgtattaagtcacattttaatattagatacatccgta 90
||||| ||||||||| |||| ||||||| || | ||||||| | |||| | ||| |||
Sbjct: 30 tcttaaatttgtctagatacggatgtatctagactcattttagtgctagacatatctgta 89
Query: 91 tctagataaatctaagacaagaattttaggacggagggagta 132
|||||| ||||| |||||||| | ||| | ||||||||||||
Sbjct: 90 tctagacaaatcgaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 101 tctaagacaagaattttaggacggagggagtattt 135
|||| |||||| ||||| |||||||||||||||||
Sbjct: 36 tctacgacaagtattttgggacggagggagtattt 2
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 ttatactccctccgtctcaaaat 25
|||||||||||||||||||||||
Sbjct: 104 ttatactccctccgtctcaaaat 82
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 attttaggacggagggagtattt 135
|||||||||||||||||||||||
Sbjct: 83 attttaggacggagggagtattt 105
>RF00906;MIR1122;AAAA02019740.1/10862-10702 39946:Oryza sativa
Indica Group
Length = 161
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 ttatactccctccgtctcaaaat 25
|||||||||||||||||||||||
Sbjct: 160 ttatactccctccgtctcaaaat 138
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 4 tatactccctccgtctcaaaat 25
||||||||||||||||||||||
Sbjct: 118 tatactccctccgtctcaaaat 97
>RF00906;MIR1122;AAAA02000585.1/2941-3070 39946:Oryza sativa Indica
Group
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 4 tatactccctccgtctcaaaat 25
||||||||||||||||||||||
Sbjct: 128 tatactccctccgtctcaaaat 107
>RF00906;MIR1122;AC130607.2/121928-122037 39947:Oryza sativa
Japonica Group
Length = 110
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tatactccctccgtctcaaaat 25
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtctcaaaat 24
