miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 180 bits (91), Expect = 3e-45
Identities = 118/127 (92%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 64
Query: 61 cgttttagtattagatacatccgtatctagacaaatctaaaataagaattttggaacgga 120
|||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||
Sbjct: 65 cgttttagtattagatacatccgtatctaggcaaatctaagacaagaattttggaacgga 124
Query: 121 gggagta 127
|| ||||
Sbjct: 125 ggaagta 131
Score = 77.8 bits (39), Expect = 3e-14
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 74 gatacatccgtatctagacaaatctaaaataagaattttggaacggagggagtac 128
||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||
Sbjct: 58 gatacatccgtatttagacaaatctaagacaagaattttgggacggagggagtac 4
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgt 51
||||||||||||||||||||| ||| ||||||||||
Sbjct: 116 aaaattcttgtcttagatttgcctagatacggatgt 81
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 151 bits (76), Expect = 3e-36
Identities = 103/112 (91%)
Strand = Plus / Plus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgtgtcacgtcacgttttagtattaga 75
|||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||
Sbjct: 20 aaaattcttgtcttagatttttctaaatagggatgtatcaactcacgttttagtattaga 79
Query: 76 tacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||| ||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 80 tacatccatatctagacaaatctaagacaagaattttgggacggagggagta 131
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgt 51
|||||||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct: 131 tactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgt 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 74 gatacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||||| ||| |||| |||||||| | ||||||||||| || || ||||||
Sbjct: 58 gatacatccctatttagaaaaatctaagacaagaattttgggacagaaggagta 5
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 143 bits (72), Expect = 7e-34
Identities = 102/112 (91%)
Strand = Plus / Plus
Query: 17 aaattcttgtcttagatttgtctaaatacggatgtgtcacgtcacgttttagtattagat 76
|||||||||||||| ||||||||||| ||| |||| ||| |||||||||| |||||||||
Sbjct: 21 aaattcttgtcttaaatttgtctaaagacgaatgtatcaagtcacgtttttgtattagat 80
Query: 77 acatccgtatctagacaaatctaaaataagaattttggaacggagggagtac 128
||||||||||||||||||| ||| || ||||||||||| |||||||||||||
Sbjct: 81 acatccgtatctagacaaagctacaacaagaattttgggacggagggagtac 132
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgt 51
|||||||||||| ||||||||||| ||| |||||||| ||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgt 81
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 135 bits (68), Expect = 2e-31
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgtgtcacgtcacgttttagtattaga 75
||||||||||||||||||||||||| |||||||||| ||| ||||| |||| ||||||||
Sbjct: 20 aaaattcttgtcttagatttgtctagatacggatgtatcaagtcacattttcgtattaga 79
Query: 76 tacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
|||||| |||||||||||||||||| | ||||| ||||| || |||||||||
Sbjct: 80 tacatctgtatctagacaaatctaagacaagaaatttgggacagagggagta 131
Score = 83.8 bits (42), Expect = 6e-16
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 74 gatacatccgtatctagacaaatctaaaataagaattttggaacggagggagtacttt 131
||||||||||||||||||||||||||| | ||||||||||| || |||||||||||||
Sbjct: 58 gatacatccgtatctagacaaatctaagacaagaattttgggaccgagggagtacttt 1
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 119 bits (60), Expect = 1e-26
Identities = 99/112 (88%)
Strand = Plus / Minus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgtgtcacgtcacgttttagtattaga 75
|||||||||||||||||||||||||||||||||||| | | |||| ||||||||||| |
Sbjct: 116 aaaattcttgtcttagatttgtctaaatacggatgtatgaagtcatattttagtattaaa 57
Query: 76 tacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||| |||||||||||||| ||| | |||||||||| ||||||||||||
Sbjct: 56 tacatatgtatctagacaaatgtaagacaagaattttgagacggagggagta 5
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 75 atacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
|||||||||||| ||||||||||||| | ||||||||||| | ||||||||||
Sbjct: 79 atacatccgtatttagacaaatctaagacaagaattttgggatggagggagta 131
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatac 45
|||||||||||| | ||||||||||||||| ||||||||| ||||
Sbjct: 5 tactccctccgtctcaaaattcttgtcttacatttgtctagatac 49
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 119 bits (60), Expect = 1e-26
Identities = 110/127 (86%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctagtca 64
Query: 61 cgttttagtattagatacatccgtatctagacaaatctaaaataagaattttggaacgga 120
|||||||| ||||| |||| | |||||| |||||||||| | |||||||||| |||||
Sbjct: 65 tgttttagtgttagacacattcatatctaaacaaatctaagacnagaattttgggacgga 124
Query: 121 gggagta 127
|||||||
Sbjct: 125 gggagta 131
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||
Sbjct: 60 tagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtc 54
|||||||||||| |||||||| ||||||||||||| || ||| | |||||||
Sbjct: 131 tactccctccgtcccaaaattctngtcttagatttgtttagatatgaatgtgtc 78
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 109 bits (55), Expect = 1e-23
Identities = 109/127 (85%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||| | | |||||||| |||||| |||| |||||||| |||||| || ||||
Sbjct: 5 tactccctccatctcaaaattctggtcttaaatttctctaaatatggatgtatctagtca 64
Query: 61 cgttttagtattagatacatccgtatctagacaaatctaaaataagaattttggaacgga 120
||||||||| ||||||||||||||||||||| ||||| | | ||||||||||| |||||
Sbjct: 65 cgttttagtgttagatacatccgtatctagataaatcctagacaagaattttgggacgga 124
Query: 121 gggagta 127
|| ||||
Sbjct: 125 ggtagta 131
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 99.6 bits (50), Expect = 9e-21
Identities = 98/114 (85%)
Strand = Plus / Minus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgtgtcacgtcacgttttagtattaga 75
||||||||||||||| |||||||||||||||||||| || || || ||||||| |||||
Sbjct: 116 aaaattcttgtcttaaatttgtctaaatacggatgtatctagttacattttagtgttaga 57
Query: 76 tacatccgtatctagacaaatctaaaataagaattttggaacggagggagtact 129
|||||| |||||| |||||| ||| | ||||||||||| | ||||||| ||||
Sbjct: 56 tacatctttatctaaacaaatgtaagacaagaattttgggatggagggaatact 3
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagtac 128
||||||||||||||| ||||||||| ||| | ||||||||||| |||||||| ||||
Sbjct: 76 tagatacatccgtatttagacaaatttaagacaagaattttgggacggagggggtac 132
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 97.6 bits (49), Expect = 4e-20
Identities = 109/129 (84%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| |||||| |||||||| ||||||||||||| |||||| | || |
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtta 64
Query: 61 cgttttagtattagatacatccgtatctagacaaatctaaaataagaattttggaacgga 120
| ||||||| ||||||||||||||||||| |||||| ||| | ||||||||||| | |||
Sbjct: 65 cattttagtgttagatacatccgtatctaaacaaatgtaagacaagaattttgggatgga 124
Query: 121 gggagtact 129
|||| ||||
Sbjct: 125 gggaatact 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 75 atacatccgtatctagacaaatctaaaataagaattttggaacggagggagtac 128
|||||||| ||| ||||||||| ||| | || |||||||| |||||||||||||
Sbjct: 57 atacatccatatttagacaaatttaagacaacaattttgggacggagggagtac 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgt 51
||||||||||||||| |||||| || ||||||||||
Sbjct: 116 aaaattcttgtcttacatttgtttagatacggatgt 81
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 95.6 bits (48), Expect = 1e-19
Identities = 101/116 (87%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgtgtcacgtcacgttttagta-ttag 74
||||||||||||||||||||||||||||| | |||| || |||| ||||||||| ||||
Sbjct: 20 aaaattcttgtcttagatttgtctaaatatgaatgtatctagtcatgttttagtatttag 79
Query: 75 atacatccgtatctagacaaatctaaaataagaattttggaacggagggagtactt 130
|||||||| | ||||||| ||| ||| | ||||||||||| |||||| ||||||||
Sbjct: 80 atacatccatttctagac-aatttaagacaagaattttgggacggagagagtactt 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttgg 114
||||||||| | ||| ||||||||||||| | |||||||||||
Sbjct: 60 tagatacattcatatttagacaaatctaagacaagaattttgg 18
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 81.8 bits (41), Expect = 2e-15
Identities = 96/113 (84%), Gaps = 1/113 (0%)
Strand = Plus / Plus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgtgtcacgtcacgttttagtatt-ag 74
||||||||||||||| ||||||||| ||| | |||| || |||| | ||||||||| ||
Sbjct: 20 aaaattcttgtcttaaatttgtctatatatgaatgtatctagtcatggtttagtatttag 79
Query: 75 atacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
|||||||| | | ||||||| |||| | ||||||||||||||||||||||||
Sbjct: 80 atacatccatgtgtagacaatgctaagacaagaattttggaacggagggagta 132
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagtact 129
||||||||| | ||| ||||||||| ||| | ||||||||||| ||||| ||||||||
Sbjct: 60 tagatacattcatatatagacaaatttaagacaagaattttgggacggaaggagtact 3
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 81.8 bits (41), Expect = 2e-15
Identities = 108/129 (83%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| ||||||||||||||| ||||||||| ||| | |||| || ||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctagtca 64
Query: 61 cgttttagta-ttagatacatccgtatctagacaaatctaaaataagaattttggaacgg 119
|||||||||| || |||||||| | |||| ||||| ||| | ||||||||||| ||||
Sbjct: 65 cgttttagtattttgatacatctatttctaaacaaacttaagacaagaattttgggacgg 124
Query: 120 agggagtac 128
|||||||||
Sbjct: 125 agggagtac 133
Score = 63.9 bits (32), Expect = 5e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||||| | ||||||||||||| ||| | ||||||||||| ||||||||||||
Sbjct: 60 tagatacattcatatctagacaaatgtaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 79.8 bits (40), Expect = 9e-15
Identities = 107/128 (83%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| |||||||||||||||||||||| || ||| | |||| || || |
Sbjct: 5 tactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctagtta 64
Query: 61 cgttttagta-ttagatacatccgtatctagacaaatctaaaataagaattttggaacgg 119
||||||||| ||||||||||| | |||||||||| |||| | ||||||||| | ||||
Sbjct: 65 agttttagtatttagatacatcaatttctagacaaagctaagacaagaattttaggacgg 124
Query: 120 agggagta 127
||||||||
Sbjct: 125 agggagta 132
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||||| | |||||| |||||||||| | ||||||||||||||||||||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaagaattttggaacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtcta 40
|||||||||||| |||||||||||||||| ||||||||
Sbjct: 132 tactccctccgtcctaaaattcttgtcttagctttgtcta 93
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 77.8 bits (39), Expect = 3e-14
Identities = 105/127 (82%)
Strand = Plus / Minus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| ||| | |||||||| |||||||||| |||||||||| || | |
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctagact 72
Query: 61 cgttttagtattagatacatccgtatctagacaaatctaaaataagaattttggaacgga 120
| ||||||| |||||| ||||||||||||||||||||| | ||| | || ||||||||
Sbjct: 71 cattttagtgctagatatctccgtatctagacaaatctaagacaagtaattcggaacgga 12
Query: 121 gggagta 127
|||||||
Sbjct: 11 gggagta 5
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
|||||||||||||||||||||||||| || | ||| | ||||||||||||||||||
Sbjct: 76 tagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggagta 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 cttgtcttagatttgtctaaatacgga 48
||||||||||||||||||| |||||||
Sbjct: 26 cttgtcttagatttgtctagatacgga 52
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 73.8 bits (37), Expect = 5e-13
Identities = 95/113 (84%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgtgtcacgtcacgttttagtatt-ag 74
|||||||||||||||||||||| || ||| | |||| || || | ||||||||||| ||
Sbjct: 117 aaaattcttgtcttagatttgtttagatatgaatgtatctagttaagttttagtatttag 58
Query: 75 atacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||| | |||||||||| |||| | ||||||||| | ||||||||||||
Sbjct: 57 atacatcaatttctagacaaagctaagacaagaattttaggacggagggagta 5
Score = 63.9 bits (32), Expect = 5e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||||| | |||||| |||||||||| | ||||||||||||||||||| ||||
Sbjct: 77 tagatacattcatatctaaacaaatctaagacaagaattttggaacggaggtagta 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtcta 40
|||||||||||| |||||||||||||||| ||||||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagctttgtcta 44
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 71.9 bits (36), Expect = 2e-12
Identities = 107/128 (83%), Gaps = 2/128 (1%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| | |||||||||| |||| |||||| || ||||| |||| || ||||
Sbjct: 5 tactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatctagtca 64
Query: 61 cgttttagta-ttagatacatccgtatctagacaaatctaaaataagaattttggaacgg 119
||||||| |||||||||||| |||||||||| |||| | ||||||||||||| ||
Sbjct: 65 -aatttagtatttagatacatccagttctagacaaagctaagacaagaattttggaatgg 123
Query: 120 agggagta 127
||||||||
Sbjct: 124 agggagta 131
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagtacttt 131
||||||||| |||||||| |||||| ||| |||||||||| ||||||||||||||||
Sbjct: 60 tagatacattcgtatctaaacaaatataaggcaagaattttgagacggagggagtacttt 1
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 67.9 bits (34), Expect = 3e-11
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 22 cttgtcttagatttgtctaaatacggatgtgtcacgtcacgttttagtattagatacatc 81
||||||||| ||||||||| |||||||||| || | | | ||||||| |||| | |||
Sbjct: 26 cttgtcttaaatttgtctagatacggatgtatctagactcattttagtgctagacatatc 85
Query: 82 cgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||||||||||| || | ||| | ||||||||||||||||||
Sbjct: 86 tgtatctagacaaatcgaagacaagtaatttggaacggagggagta 131
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagtac 128
||||||||||||||||||||||||| ||| | ||| | || |||||||||||||||
Sbjct: 60 tagatacatccgtatctagacaaatttaagacaagtaattcagaacggagggagtac 4
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 63.9 bits (32), Expect = 5e-10
Identities = 105/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| |||||| ||||||||||||||| || ||| | |||| || ||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctagtca 64
Query: 61 cgttttagt-attagatacatccgtatctagacaaatctaaaataagaattttggaacgg 119
|||||||| |||||||||||| | |||| ||||| ||| | ||||||||||| |||
Sbjct: 65 agttttagtaattagatacatctatttctaaacaaagttaagacaagaattttgggacga 124
Query: 120 agggagta 127
||||||||
Sbjct: 125 agggagta 132
Score = 60.0 bits (30), Expect = 8e-09
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagtact 129
||||||||| | |||||| |||||||||| | || |||||||| ||||||||||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaataattttgggacggagggagtact 3
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 63.9 bits (32), Expect = 5e-10
Identities = 105/128 (82%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| | |||||| |||| || ||||||||| ||| |||||| || || |
Sbjct: 5 tactccctccgtctcaaaattattgttttgaatttgtctagatatggatgtatctagtta 64
Query: 61 cgttttagtatt-agatacatccgtatctagacaaatctaaaataagaattttggaacgg 119
| |||||||||| | || ||||| |||||| | | |||||| | ||||||||||| ||||
Sbjct: 65 cattttagtatttaaatgcatccatatctaaaaacatctaagacaagaattttgggacgg 124
Query: 120 agggagta 127
||||||||
Sbjct: 125 agggagta 132
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 72 tagatacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||||||| ||||||||||||| |||| || ||||||| ||||||||||||
Sbjct: 60 tagatacatccatatctagacaaattcaaaacaataattttgagacggagggagta 5
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 64 tttagtattagatacatccgtatctagacaaatctaaaataagaattttggaacggagg 122
|||||| ||||||||||||||||||||| |||||||| | ||| |||||| |||||||
Sbjct: 37 tttagtgttagatacatccgtatctagataaatctaagacaagctttttgggacggagg 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 22 cttgtcttagatttgtctaaatacggatgt 51
|||||||||||||| |||| ||||||||||
Sbjct: 79 cttgtcttagatttatctagatacggatgt 50
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatac 45
|||||||||| | | ||||||||||||||||||||||||| ||||
Sbjct: 97 tactccctccatcttaaaattcttgtcttagatttgtctagatac 53
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 84 tatctagacaaatctaaaataagaattttggaacggagggagta 127
|||| |||||||||||| | ||||||||||||||| ||||||||
Sbjct: 48 tatcaagacaaatctaagacaagaattttggaacgaagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 aaaattcttgtcttagatttgtct 39
||||||||||||||||||||||||
Sbjct: 20 aaaattcttgtcttagatttgtct 43
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 gtatctagacaaatctaaaataagaatttt 112
|||||||||||||||||| | |||||||||
Sbjct: 53 gtatctagacaaatctaagacaagaatttt 82
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 75 atacatccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
|||||| | ||||||||||||||||| | ||||| ||||| ||||||||||||
Sbjct: 57 atacattcatatctagacaaatctaagacaagaagtttgggacggagggagta 5
Score = 54.0 bits (27), Expect = 5e-07
Identities = 108/134 (80%), Gaps = 7/134 (5%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacggatgtgtcacgtca 60
|||||||||||| ||| ||||||||||||||||||||| ||| | |||| | ||||
Sbjct: 5 tactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtatgtagtca 64
Query: 61 cgttttagta-ttaga------tacatccgtatctagacaaatctaaaataagaattttg 113
|||||| ||| ||||| ||||||| | | |||||||| |||| | ||||||||||
Sbjct: 65 cgttttggtatttagatacacctacatccatttatagacaaacctaagacaagaattttg 124
Query: 114 gaacggagggagta 127
| ||||||||||||
Sbjct: 125 ggacggagggagta 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtcta 40
|||||||||||| |||||||||||||||| ||||||||
Sbjct: 138 tactccctccgtcccaaaattcttgtcttaggtttgtcta 99
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 16 aaaattcttgtcttagatttgtctaaatacggatgt 51
|||||||||||||||||||| |||| ||||||||||
Sbjct: 19 aaaattcttgtcttagatttatctagatacggatgt 54
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 80 tccgtatctagacaaatctaaaataagaattttggaacggagggagta 127
|||||||||| | |||||||| | ||||||||||| ||||||||||||
Sbjct: 54 tccgtatctaaataaatctaagacaagaattttgggacggagggagta 101
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 77 acatccgtatctagacaaatctaaaataagaattttgga 115
||||||||||||||| |||||||| | ||||||||||||
Sbjct: 54 acatccgtatctagataaatctaagacaagaattttgga 16
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaatacgga 48
|||||||||||| |||||||||||||||||||| | || |||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 84 tatctagacaaatctaaaataagaattttggaacggagggagta 127
||||||||||||||||| | ||||||||| | ||||||||||||
Sbjct: 48 tatctagacaaatctaagacaagaattttaggacggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtcta 40
|||||||||||| |||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagatttgtcta 44
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 70 attagatacatccgtatctagacaaatctaaaataagaatttt 112
||||||||||| | ||||||||||||||||| | |||||||||
Sbjct: 62 attagatacattcatatctagacaaatctaagacaagaatttt 20
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 1 tactccctccgtataaaaattcttgtcttagatttgtctaaa 42
|||||||||||| | |||| ||||||||||| ||||||||||
Sbjct: 132 tactccctccgtcttaaaaatcttgtcttaggtttgtctaaa 91
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 aaaattcttgtcttagatttgtcta 40
|||||||||||||||||||||||||
Sbjct: 20 aaaattcttgtcttagatttgtcta 44
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 71 ttagatacatccgtatctagacaaatct 98
||||||||||||||||||||| ||||||
Sbjct: 61 ttagatacatccgtatctagataaatct 34
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 108 attttggaacggagggagtactt 130
|||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtactt 2
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 108 attttggaacggagggagtactt 130
|||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtactt 2
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 104 aagaattttggaacggagggagtact 129
||||||| ||||||||||||||||||
Sbjct: 28 aagaattatggaacggagggagtact 3
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 104 aagaattttggaacggagggagtact 129
||||||| ||||||||||||||||||
Sbjct: 100 aagaattatggaacggagggagtact 125
>RF00906;MIR1122;EU730896.1/41625-41750 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 104 aagaattttggaacggagggagtact 129
||||||| ||||||||||||||||||
Sbjct: 99 aagaattatggaacggagggagtact 124
>RF00906;MIR1122;AAAA02002393.1/9285-9146 39946:Oryza sativa Indica
Group
Length = 140
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 109 ttttggaacggagggagtactt 130
||||||||||||||||||||||
Sbjct: 23 ttttggaacggagggagtactt 2
