miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 198 bits (100), Expect = 1e-50
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagcac 65
|||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtcttagatttgtctagatacggagatatctagcac 64
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaagacatgtaattcagaacgga 125
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 65 taaaatgagtctagatacatccgtatctagacaaatccaagacaagtaatttggaacgga 124
Query: 126 gggagtag 133
||||||||
Sbjct: 125 gggagtag 132
Score = 119 bits (60), Expect = 1e-26
Identities = 113/128 (88%), Gaps = 2/128 (1%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagcac 65
|||| |||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctag-ac 73
Query: 66 taaaatgagt-ctagatacatccgtatctagacaaatccaagacatgtaattcagaacgg 124
| | | ||| ||||||| |||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 72 tcattttagtgctagatatctccgtatctagacaaatctaagacaagtaattcggaacgg 13
Query: 125 agggagta 132
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 172 bits (87), Expect = 8e-43
Identities = 117/127 (92%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagcac 65
|||| |||||||||| ||||||||||||| |||||||||||||| ||| | ||||||||
Sbjct: 131 tactccctccgttccaaattacttgtcttcgatttgtctagatacagatatgtctagcac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaagacatgtaattcagaacgga 125
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 71 taaaatgagtctagatacatccgtatctagacaaatttaagacaagtaattcagaacgga 12
Query: 126 gggagta 132
|||||||
Sbjct: 11 gggagta 5
Score = 115 bits (58), Expect = 2e-25
Identities = 117/134 (87%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 3 atgtacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctag 62
||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 2 atgtactccctccgttctgaattacttgtcttaaatttgtctagatacggatgtatctag 61
Query: 63 cactaaaatgagt-ctagatacatccgtatctagacaaatccaagacatgtaattcagaa 121
||| | | ||| ||||| | ||| ||||||||||||||| |||||| |||||| |||
Sbjct: 62 -actcattttagtgctagacatatctgtatctagacaaatcgaagacaagtaatttggaa 120
Query: 122 cggagggagtagct 135
||||||||||||||
Sbjct: 121 cggagggagtagct 134
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagcac 65
||||||||||||||| || | ||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 131 tacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatctaatac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaagaca 109
||||| | | || ||||||||||||| |||||||||| ||||||
Sbjct: 71 taaaacgtgacttgatacatccgtatttagacaaatctaagaca 28
Score = 60.0 bits (30), Expect = 8e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 2 catgtacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatc 59
|||||||| ||||||| || || | ||||||||||||||||||| ||| |||||||||
Sbjct: 1 catgtactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 58
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaatccaagaca 109
||||||||||||||||||| |||||| ||||||
Sbjct: 76 tagatacatccgtatctaggcaaatctaagaca 108
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 95.6 bits (48), Expect = 1e-19
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 22 aattacttgtcttagatttgtctagatatggatgtatctagcactaaaatgagtctagat 81
|||| ||||||||||||||||||||||| |||||||||| || |||||| | || |||
Sbjct: 115 aatttcttgtcttagatttgtctagatacagatgtatctaatacgaaaatgtgacttgat 56
Query: 82 acatccgtatctagacaaatccaagaca 109
||||||||||||||||||||| ||||||
Sbjct: 55 acatccgtatctagacaaatctaagaca 28
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatatggatgtatc 59
||||||||||||||||||||||| |||||||||
Sbjct: 26 cttgtcttagatttgtctagatacggatgtatc 58
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaatccaagaca 109
|||||||||| ||||||||||||||| ||||||
Sbjct: 76 tagatacatctgtatctagacaaatctaagaca 108
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 79.8 bits (40), Expect = 9e-15
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagcac 65
|||| ||||||| || || | ||||||||||||||||||||||||||||||||||| ||
Sbjct: 131 tactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatctaatac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaagaca 109
||||| | | | ||||||||| ||| |||| ||||| ||||||
Sbjct: 71 taaaacgtgagttgatacatccctatttagaaaaatctaagaca 28
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaatccaagaca 109
||||||||||| |||||||||||||| ||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagaca 108
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatatggatgtatctagcactaaaatgagtctagatacatc 86
||||||||| |||||| |||||| |||||||||| |||||||||| |||||||||||
Sbjct: 26 cttgtcttacatttgtttagataaagatgtatctaacactaaaatgtaactagatacatc 85
Query: 87 cgtatctagacaaat 101
||||| |||||||||
Sbjct: 86 cgtatttagacaaat 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 27 cttgtcttagatttgtctagatatggatgtatctag 62
||||||||| ||||||||| ||| ||||||||||||
Sbjct: 110 cttgtcttaaatttgtctaaatacggatgtatctag 75
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 75.8 bits (38), Expect = 1e-13
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagcac 65
|||| ||||||| || || | || ||||||||||||| |||||||| |||| |||| |||
Sbjct: 131 tactccctccgtcccaaaattctngtcttagatttgtttagatatgaatgtgtctaacac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaatc 102
||||| | |||||||||||||||| ||||||||||
Sbjct: 71 taaaacatgactagatacatccgtatttagacaaatc 35
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctag 62
|||| ||||||| || || | |||||| |||||||||||| ||| ||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctag 61
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 69.9 bits (35), Expect = 8e-12
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 27 cttgtcttagatttgtctagatatggatgtatctagcactaaaatgagtctagatacatc 86
||||||||| |||||| |||||| ||||||||||| |||||||||| ||| |||||||
Sbjct: 110 cttgtcttacatttgtttagatacggatgtatctaacactaaaatgtaactacatacatc 51
Query: 87 cgtatctagacaaat 101
| ||| |||||||||
Sbjct: 50 catatttagacaaat 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 28 ttgtcttagatttgtctagatatggatgtat 58
|||||||| ||||||||| ||||||||||||
Sbjct: 27 ttgtcttaaatttgtctaaatatggatgtat 57
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctag 62
|||| |||||||||| || | |||||||||||||||| |||||||| ||||||||||
Sbjct: 5 tactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctag 61
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctag 62
|||| |||||||||| || | |||||||||||||||| |||||||| ||||||||||
Sbjct: 132 tactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctag 76
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 63.9 bits (32), Expect = 5e-10
Identities = 80/96 (83%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagcac 65
|||| ||||||| || || | ||||||| ||||| |||||||| ||||||||||| |||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatctaacac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaat 101
||||| | | |||||||||||| ||| |||| ||||
Sbjct: 71 taaaacgtgactagatacatccatatttagagaaat 36
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaatccaagaca 109
|||||||||||||||||||| |||||| |||||
Sbjct: 76 tagatacatccgtatctagataaatcctagaca 108
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatatggatgtatcta 61
||||||||||||||||||||||||| |||||||||
Sbjct: 26 cttgtcttagatttgtctagatatgaatgtatcta 60
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 27 cttgtcttagatttgtctagatatggatgtatctagcactaaa 69
|||||||||||||| |||||||| ||||||||||| |||||||
Sbjct: 79 cttgtcttagatttatctagatacggatgtatctaacactaaa 37
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaatccaagaca 109
|||||||||||||||||||| ||||| ||||||
Sbjct: 45 tagatacatccgtatctagataaatctaagaca 77
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtat 58
|||| ||||||| || || | ||||||||||||||||||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtat 57
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctag 62
|||| ||||||| || || | ||||||||| ||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctag 61
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatatggatgtatctag 62
||||||||||||||||||| ||||| ||||||||||
Sbjct: 26 cttgtcttagatttgtctaaatatgaatgtatctag 61
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 54.0 bits (27), Expect = 5e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatatggatgtatctagcactaaaatgagtctagatacatc 86
||||||||| ||||||||||||| |||||| || |||||||| | || |||||||
Sbjct: 26 cttgtcttacatttgtctagatacatatgtatttaatactaaaatatgacttcatacatc 85
Query: 87 cgtatctagacaaatccaagaca 109
||||| |||||||||| ||||||
Sbjct: 86 cgtatttagacaaatctaagaca 108
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 27 cttgtcttagatttgtctagatatggatgtat 58
||||||||||||||||||| ||| ||||||||
Sbjct: 110 cttgtcttagatttgtctaaatacggatgtat 79
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| |||||||| ||||||||||||||
Sbjct: 38 atggatgtatctagaactaaaatatgtctagatacatcc 76
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtacttcctccgttccgaattacttgtct 33
||||| |||||||||||||||||||||||
Sbjct: 4 gtactccctccgttccgaattacttgtct 32
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 106 gacatgtaattcagaacggagggagta 132
|||| ||||||||||||||||||||||
Sbjct: 85 gacaagtaattcagaacggagggagta 111
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 28 ttgtcttagatttgtctagatatggatgtatctag 62
||||||||||||||| |||||||| ||||||||||
Sbjct: 27 ttgtcttagatttgtttagatatgaatgtatctag 61
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| |||||||| ||||||||||||||
Sbjct: 48 atggatgtatctagaactaaaatacgtctagatacatcc 86
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| |||||||| ||||||||||||||
Sbjct: 78 atggatgtatctagaactaaaatacgtctagatacatcc 40
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 37 atttgtctagatatggatgtatctag 62
||||||||||||||||||||||||||
Sbjct: 36 atttgtctagatatggatgtatctag 61
Score = 50.1 bits (25), Expect = 8e-06
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagc-a 64
|||| ||||||| || || | |||||||||||| | | |||||||||||| || || |
Sbjct: 132 tactccctccgtcccaaaattcttgtcttagatgtttttagatatggatgcatttaaata 73
Query: 65 ctaaaatgagtctagatacatccgtatctagacaaat 101
|||||||| |||||||||||| |||||||||||||
Sbjct: 72 ctaaaatgtaactagatacatccatatctagacaaat 36
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 tgtacttcctccgttccgaattacttgtc 32
|||||| ||||||||||||||||||||||
Sbjct: 145 tgtactccctccgttccgaattacttgtc 117
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 49 atggatgtatctagcactaaaatgagtctagatacat 85
|||||||||||||||||| |||| ||||||||||||
Sbjct: 38 atggatgtatctagcactgaaatacgtctagatacat 74
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 50.1 bits (25), Expect = 8e-06
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 44 tagatatggatgtatctagcact-aaaatgagtctagatacatcc 87
|||| |||||||||||||| ||| |||||| ||||||||||||||
Sbjct: 34 tagaaatggatgtatctagaactaaaaatgcgtctagatacatcc 78
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatatg 51
|||||||||||||||||||||||||
Sbjct: 26 cttgtcttagatttgtctagatatg 50
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 102/128 (79%)
Strand = Plus / Minus
Query: 5 gtacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagca 64
||||| ||||||| || || | ||||| ||| |||||||||||| ||||||||||| |
Sbjct: 132 gtactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatctaata 73
Query: 65 ctaaaatgagtctagatacatccgtatctagacaaatccaagacatgtaattcagaacgg 124
| |||| | | || ||||||| ||| | ||||||||| |||||| | | ||||| ||||
Sbjct: 72 caaaaacgtgacttgatacattcgtctttagacaaatttaagacaagaatttcaggacgg 13
Query: 125 agggagta 132
|| |||||
Sbjct: 12 agcgagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaa 100
||||||||||||||||||||||||
Sbjct: 76 tagatacatccgtatctagacaaa 99
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 46 gatatggatgtatctagcactaaaatgagtctagatacat 85
||||||||||||||||| |||||||| |||||||||||
Sbjct: 35 gatatggatgtatctagaactaaaatacatctagatacat 74
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 52 gatgtatctagcactaaaatgagtctagatacatcc 87
||||||||||| |||||||| ||||||||||||||
Sbjct: 85 gatgtatctagaactaaaatatgtctagatacatcc 50
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 52 gatgtatctagcactaaaatgagtctagatacatcc 87
||||||||||| |||||||| ||||||||||||||
Sbjct: 41 gatgtatctagaactaaaatacgtctagatacatcc 76
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 50 tggatgtatctagcactaaaatgagtctagatacat 85
|||||||||||| |||||||| |||||||||||||
Sbjct: 48 tggatgtatctataactaaaataagtctagatacat 83
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatcta 61
|||| |||||||||| || | |||||||||| ||||||| | |||||||||||||
Sbjct: 132 tactccctccgttccaaaattcttgtcttagcattgtctacacatggatgtatcta 77
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatcta 61
|||| ||||| |||| || | |||||||||| |||||||||| ||||||||||||
Sbjct: 131 tactccctccattccaaaattcttgtcttagctttgtctagaactggatgtatcta 76
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 5 gtacttcctccgttccgaattacttgtc 32
||||| ||||||||||||||||||||||
Sbjct: 112 gtactccctccgttccgaattacttgtc 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| |||||||| |||||||||||||
Sbjct: 38 atggatgtatctagaactaaaatacatctagatacatcc 76
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 6 tacttcctccgttccgaattacttgtcttagatttgtctagatatggatgtatctagcac 65
||||||||||| ||| || | |||||| | ||||| | ||||||||||||||||| |
Sbjct: 5 tacttcctccgatccatatcaattgtctcaaatttgcccagatatggatgtatctatgcc 64
Query: 66 taaaatgagtctagatacat 85
||||| | ||||||||||||
Sbjct: 65 taaaaagcgtctagatacat 84
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tacttcctccgttccgaattacttgtc 32
|||||| ||||||||||||||||||||
Sbjct: 111 tacttcttccgttccgaattacttgtc 85
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 27 cttgtcttagatttgtctagata 49
|||||||||||||||||||||||
Sbjct: 76 cttgtcttagatttgtctagata 54
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| |||||||| |||||||||||||
Sbjct: 77 atggatgtatctagaactaaaatacatctagatacatcc 39
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 111 gtaattcagaacggagggagtag 133
|||||||||||||||||||||||
Sbjct: 26 gtaattcagaacggagggagtag 4
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| |||||||| |||||||||||||
Sbjct: 78 atggatgtatctagaactaaaatacatctagatacatcc 40
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| |||||||| |||||| |||||||
Sbjct: 48 atggatgtatctagaactaaaatacgtctaggtacatcc 86
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| |||||||| |||||||||||||
Sbjct: 48 atggatgtatctagaactaaaatacatctagatacatcc 86
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||| ||||||| |||||||| ||||||||||||||
Sbjct: 38 atggatctatctagaactaaaatacgtctagatacatcc 76
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
||||||||||||| |||||||| ||||||||| |||||
Sbjct: 78 atggatgtatctataactaaaataagtctagattcatcc 40
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatatggatgtatcta 61
||||||| |||||| |||||||| |||||||||||
Sbjct: 26 cttgtctaagatttatctagatacggatgtatcta 60
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagacaaatc 102
|||||||||||||||||||| |||||
Sbjct: 60 tagatacatccgtatctagataaatc 35
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| |||||||| |||||||||||||
Sbjct: 78 atggatgtatctagaactaaaatacatctagatacatcc 40
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||||| | |||||| ||||||||||||||
Sbjct: 78 atggatgtatctagaagtaaaatacgtctagatacatcc 40
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 74 gtctagatacatccgtatctagacaaatccaagacatgtaattcagaacggagggagta 132
||||||||||||||| || | ||||||| ||| ||| ||||| ||||||||||||||
Sbjct: 63 gtctagatacatccgcatgtggacaaatggaagtcatctaatttggaacggagggagta 5
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 cctccgttccgaattacttgtc 32
||||||||||||||||||||||
Sbjct: 106 cctccgttccgaattacttgtc 85
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatatggatgt 56
|||||||||||||| |||||||| ||||||
Sbjct: 25 cttgtcttagatttatctagatacggatgt 54
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 49 atggatgtatctagcactaaaatgagtctagatacatc 86
||||||||||||| | |||||| ||||||||||||||
Sbjct: 78 atggatgtatctataagtaaaataagtctagatacatc 41
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 gatgtatctagcactaaaatgagtctagatacat 85
|||||||||| |||||||| |||||||||||||
Sbjct: 50 gatgtatctataactaaaataagtctagatacat 83
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 49 atggatgtatctagcactaaaatgagtctagata 82
||||||||||||| |||||||| ||||||||||
Sbjct: 47 atggatgtatctataactaaaataagtctagata 80
