miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 206 bits (104), Expect = 6e-53
Identities = 122/128 (95%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtcttagatttgtctagatacggagatatctagcac 64
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaagaaaagtaattcagaatgga 125
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct: 65 taaaatgagtctagatacatccgtatctagacaaatccaagacaagtaatttggaacgga 124
Query: 126 gggagtag 133
||||||||
Sbjct: 125 gggagtag 132
Score = 127 bits (64), Expect = 4e-29
Identities = 114/128 (89%), Gaps = 2/128 (1%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctag-ac 73
Query: 66 taaaatgagt-ctagatacatccgtatctagacaaatccaagaaaagtaattcagaatgg 124
| | | ||| ||||||| |||||||||||||||||| |||| ||||||||| ||| ||
Sbjct: 72 tcattttagtgctagatatctccgtatctagacaaatctaagacaagtaattcggaacgg 13
Query: 125 agggagta 132
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 180 bits (91), Expect = 3e-45
Identities = 118/127 (92%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
||||||||||||||| ||||||||||||| ||||||||||||||| ||| | ||||||||
Sbjct: 131 tactccctccgttccaaattacttgtcttcgatttgtctagatacagatatgtctagcac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaagaaaagtaattcagaatgga 125
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct: 71 taaaatgagtctagatacatccgtatctagacaaatttaagacaagtaattcagaacgga 12
Query: 126 gggagta 132
|||||||
Sbjct: 11 gggagta 5
Score = 119 bits (60), Expect = 1e-26
Identities = 116/132 (87%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 5 gtactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagca 64
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 4 gtactccctccgttctgaattacttgtcttaaatttgtctagatacggatgtatctag-a 62
Query: 65 ctaaaatgagt-ctagatacatccgtatctagacaaatccaagaaaagtaattcagaatg 123
|| | | ||| ||||| | ||| ||||||||||||||| |||| |||||||| ||| |
Sbjct: 63 ctcattttagtgctagacatatctgtatctagacaaatcgaagacaagtaatttggaacg 122
Query: 124 gagggagtagct 135
||||||||||||
Sbjct: 123 gagggagtagct 134
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 107 bits (54), Expect = 4e-23
Identities = 90/102 (88%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
||||||||| || || |||| |||||||||||||||||||||||| |||||||||| ||
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatctaatac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaaga 107
|||||| | || |||||||||||||||||||||||| ||||
Sbjct: 71 gaaaatgtgacttgatacatccgtatctagacaaatctaaga 30
Score = 69.9 bits (35), Expect = 8e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 5 gtactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatc 59
|||||||||| || || || | |||||||||||||||||||||||||||||||||
Sbjct: 4 gtactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatc 58
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 99.6 bits (50), Expect = 9e-21
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
|||| |||||||||| || | ||||||||||||||| ||||||||||||||||||| ||
Sbjct: 131 tacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatctaatac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaaga 107
||||| | | || ||||||||||||| |||||||||| ||||
Sbjct: 71 taaaacgtgacttgatacatccgtatttagacaaatctaaga 30
Score = 69.9 bits (35), Expect = 8e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 5 gtactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatc 59
||||||||||||| || || | ||||||||||||||||||| |||||||||||||
Sbjct: 4 gtactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 58
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatacggatgtatctagcactaaaatgagtctagatacatc 86
||||||||| |||||| |||||| |||||||||| |||||||||| |||||||||||
Sbjct: 26 cttgtcttacatttgtttagataaagatgtatctaacactaaaatgtaactagatacatc 85
Query: 87 cgtatctagacaaat 101
||||| |||||||||
Sbjct: 86 cgtatttagacaaat 100
Score = 60.0 bits (30), Expect = 8e-09
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 5 gtactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctag 62
|||| |||||||| || || | ||||||||| ||||||||| ||||||||||||||||
Sbjct: 132 gtaccccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatctag 75
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 27 cttgtcttagatttgtctagatacggatgtatctagcactaaaatgagtctagatacatc 86
||||||||| |||||| |||||||||||||||||| |||||||||| ||| |||||||
Sbjct: 110 cttgtcttacatttgtttagatacggatgtatctaacactaaaatgtaactacatacatc 51
Query: 87 cgtatctagacaaat 101
| ||| |||||||||
Sbjct: 50 catatttagacaaat 36
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 5 gtactccctccgttccgaattacttgtcttagatttgtctagatacggatgtat 58
||||||||||||| || || | |||||||| ||||||||| ||| ||||||||
Sbjct: 4 gtactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtat 57
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 75.8 bits (38), Expect = 1e-13
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
|||||||||||| || || | ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 131 tactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatctaatac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaaga 107
||||| | | | ||||||||| ||| |||| ||||| ||||
Sbjct: 71 taaaacgtgagttgatacatccctatttagaaaaatctaaga 30
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaatccaaga 107
||||||||||| |||||||||||||| ||||
Sbjct: 76 tagatacatccatatctagacaaatctaaga 106
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 75.8 bits (38), Expect = 1e-13
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
|||||||||||| || || | || ||||||||||||| |||||| | |||| |||| |||
Sbjct: 131 tactccctccgtcccaaaattctngtcttagatttgtttagatatgaatgtgtctaacac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaatc 102
||||| | |||||||||||||||| ||||||||||
Sbjct: 71 taaaacatgactagatacatccgtatttagacaaatc 35
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctag 62
|||||||||||| || || | |||||| |||||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctag 61
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 71.9 bits (36), Expect = 2e-12
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
|||| ||||||| || || | ||||||| ||||| |||||||||||||||||||| |||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatctaacac 72
Query: 66 taaaatgagtctagatacatccgtatctagacaaat 101
||||| | | |||||||||||| ||| |||| ||||
Sbjct: 71 taaaacgtgactagatacatccatatttagagaaat 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaatcc 103
|||||||||||||||||||| ||||||
Sbjct: 76 tagatacatccgtatctagataaatcc 102
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 27 cttgtcttagatttgtctagatacggatgtatctagcactaaa 69
|||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 79 cttgtcttagatttatctagatacggatgtatctaacactaaa 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaatccaaga 107
|||||||||||||||||||| ||||| ||||
Sbjct: 45 tagatacatccgtatctagataaatctaaga 75
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctag 62
||||||||||||||| || | |||||||||||||||| |||||| | ||||||||||
Sbjct: 5 tactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctag 61
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 63.9 bits (32), Expect = 5e-10
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
|||||||||||| | || | ||||||||| |||||||||||||| |||||| || ||
Sbjct: 5 tactccctccgtctcaaaattcttgtcttacatttgtctagatacatatgtatttaatac 64
Query: 66 taaaatgagtctagatacatccgtatctagacaaatccaagaaaagtaattcagaatgga 125
|||||| | || |||||||||||| |||||||||| |||| ||| | || | |||||
Sbjct: 65 taaaatatgacttcatacatccgtatttagacaaatctaagacaagaattttgggatgga 124
Query: 126 gggagtag 133
||||||||
Sbjct: 125 gggagtag 132
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtat 58
|||||||||| | || || | ||||||||||||||||||| ||||||||||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtat 79
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 aggtactccctccgttccgaattacttgtct 33
|||||||||||||||||||||||||||||||
Sbjct: 2 aggtactccctccgttccgaattacttgtct 32
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 51 ggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||| |||||||| ||||||||||||||
Sbjct: 40 ggatgtatctagaactaaaatatgtctagatacatcc 76
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtc 32
|||||||||||||| ||||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtc 85
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 60.0 bits (30), Expect = 8e-09
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 4 ggtactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatcta 61
|||||||||||||| || || | ||||| ||| ||||||||||||||||||||||||
Sbjct: 133 ggtactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatcta 76
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tagatacatccgtatctagacaaa 100
||||||||||||||||||||||||
Sbjct: 76 tagatacatccgtatctagacaaa 99
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtat 58
|||||||||||| || || | ||||||||||||||||||||||| | ||||||
Sbjct: 5 tactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtat 57
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctag 62
|||||||||||| || || | ||||||||| ||||||||||||| | ||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctag 61
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctag 62
|||| |||||||||| || | |||||||||||||||| |||||| | ||||||||||
Sbjct: 132 tactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctag 76
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 gtactccctccgttccgaattacttgtc 32
||||||||||||||||||||||||||||
Sbjct: 144 gtactccctccgttccgaattacttgtc 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtc 32
|||||||| ||||||||||||||||||
Sbjct: 5 tactcccttcgttccgaattacttgtc 31
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 gtactccctccgttccgaattacttgtc 32
||||||||||||||||||||||||||||
Sbjct: 112 gtactccctccgttccgaattacttgtc 85
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 87/103 (84%), Gaps = 3/103 (2%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgt-cttagatttgtctagatacggatgtatctag-c 63
||||||||||||||| ||||||||| | | |||| |||||| |||||||||||||| |
Sbjct: 132 tactccctccgttccaaattacttggacccatatttatctagacacggatgtatctagac 73
Query: 64 actaaaatgagtctagatacatccgtatctagacaaatccaag 106
|||||| ||| ||||||||||||| | ||||||||| ||||
Sbjct: 72 actaaaca-agtatagatacatccgtgtttagacaaattcaag 31
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 5 gtactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatcta 61
|||||||||||||||| || || ||| ||| ||||||||| | |||||||||||||
Sbjct: 4 gtactccctccgttccaaaatagttgacttgaatttgtctaaacacggatgtatcta 60
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatacggatgtatcta 61
||||||||||||||||||||||| | |||||||||
Sbjct: 26 cttgtcttagatttgtctagatatgaatgtatcta 60
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatacggatgtatcta 61
||||||| |||||| ||||||||||||||||||||
Sbjct: 26 cttgtctaagatttatctagatacggatgtatcta 60
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 77 tagatacatccgtatctagacaaatc 102
|||||||||||||||||||| |||||
Sbjct: 60 tagatacatccgtatctagataaatc 35
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatacggatgt 56
|||||||||||||| |||||||||||||||
Sbjct: 25 cttgtcttagatttatctagatacggatgt 54
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacgga 53
|||||||||||| || || | |||||||||||||| | ||||||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 5 gtactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctag 62
||||||||||||| || || | ||||||||||||||| |||||| | ||||||||||
Sbjct: 4 gtactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctag 61
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 aggtactccctccgttccgaattacttgtc 32
||||||||||||||||| ||||||||||||
Sbjct: 2 aggtactccctccgttcggaattacttgtc 31
>RF00906;MIR1122;FJ394373.1/383-480 4573:Aegilops speltoides
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatg 55
|||||||||||| |||||||| ||| ||||||||||| || || ||||||
Sbjct: 94 tactccctccgtcccgaattagttgccttagatttgtttatatgcggatg 45
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 50.1 bits (25), Expect = 8e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctag 62
|||||||| |||||| || | |||||||||||||||||| |||| |||||||||||
Sbjct: 5 tactcccttcgttccaaaattcttgtcttagatttgtcttgata-agatgtatctag 60
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 27 cttgtcttagatttgtctagatac 50
||||||||||||||||||||||||
Sbjct: 76 cttgtcttagatttgtctagatac 53
>RF00906;MIR1122;FJ394375.1/382-487 4568:Triticum monococcum
Length = 106
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctag 62
|||||||||| | |||| ||| ||| |||| |||||||||||||| | |||||||||
Sbjct: 102 tactccctccatcccgatttagttgccttatatttgtctagatacaggtgtatctag 46
>RF00906;MIR1122;AY244513.1/784-861 4568:Triticum monococcum
Length = 78
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgt 42
||||||||||| ||| ||||||||||||||||||||
Sbjct: 5 tactccctccgatccatattacttgtcttagatttgt 41
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 gtactccctccgttccgaattacttgtct 33
||||||||||||||| |||||||||||||
Sbjct: 112 gtactccctccgttcggaattacttgtct 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtct 33
|||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgttcggaattacttgtct 32
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 50.1 bits (25), Expect = 8e-06
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagc-a 64
|||||||||||| || || | |||||||||||| | | |||||| ||||| || || |
Sbjct: 132 tactccctccgtcccaaaattcttgtcttagatgtttttagatatggatgcatttaaata 73
Query: 65 ctaaaatgagtctagatacatccgtatctagacaaat 101
|||||||| |||||||||||| |||||||||||||
Sbjct: 72 ctaaaatgtaactagatacatccatatctagacaaat 36
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 atttgtctagatacggatgtatctag 62
||||||||||||| ||||||||||||
Sbjct: 36 atttgtctagatatggatgtatctag 61
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 51 ggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||| |||||||| ||||||||||||||
Sbjct: 50 ggatgtatctagaactaaaatacgtctagatacatcc 86
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 51 ggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||||| |||||||| ||||||||||||||
Sbjct: 76 ggatgtatctagaactaaaatacgtctagatacatcc 40
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 52 gatgtatctagcactaaaatgagtctagatacatcc 87
||||||||||| |||||||| ||||||||||||||
Sbjct: 85 gatgtatctagaactaaaatatgtctagatacatcc 50
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 52 gatgtatctagcactaaaatgagtctagatacatcc 87
||||||||||| |||||||| ||||||||||||||
Sbjct: 41 gatgtatctagaactaaaatacgtctagatacatcc 76
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtc 32
|||||||||||||| ||||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtc 85
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatcta 61
||||||||||||||| || | |||||||||| ||||||| | | |||||||||||
Sbjct: 132 tactccctccgttccaaaattcttgtcttagcattgtctacacatggatgtatcta 77
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagata 49
|||||||||||| | || | |||||||||||||||||||||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagatttgtctagata 48
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatcta 61
|||||||||| |||| || | |||||||||| |||||||||| |||||||||||
Sbjct: 131 tactccctccattccaaaattcttgtcttagctttgtctagaactggatgtatcta 76
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 5 gtactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctag 62
||||||||||||| | || | |||| |||| |||||| |||||||| ||||||||||
Sbjct: 4 gtactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatctag 61
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 27 cttgtcttagatttgtctagatacggatgtatctag 62
||||||||||||||||||| ||| | ||||||||||
Sbjct: 26 cttgtcttagatttgtctaaatatgaatgtatctag 61
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 ccctccgttccgaattacttgtc 32
|||||||||||||||||||||||
Sbjct: 107 ccctccgttccgaattacttgtc 85
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 aggtactccctccgttccgaattacttgtct 33
||||||||||||| ||| |||||||||||||
Sbjct: 2 aggtactccctccattcggaattacttgtct 32
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 caggtactccctccgttccgaattact 28
|||||| ||||||||||||||||||||
Sbjct: 1 caggtattccctccgttccgaattact 27
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3 aggtactccctccgttccgaattact 28
|||||||||||||||||| |||||||
Sbjct: 114 aggtactccctccgttccaaattact 89
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 51 ggatgtatctagcactaaaatgagtctagatacat 85
|||||||||||||||| |||| ||||||||||||
Sbjct: 40 ggatgtatctagcactgaaatacgtctagatacat 74
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 51 ggatgtatctagcactaaaatgagtctagatacat 85
||||||||||| |||||||| |||||||||||||
Sbjct: 49 ggatgtatctataactaaaataagtctagatacat 83
>RF00906;MIR1122;EU282716.1/1526-1412 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 49 acggatgtatctagcactaaaatgagtctagatacatcc 87
|||||||||| ||||||| |||| ||||||||||||||
Sbjct: 78 acggatgtatttagcactgaaatacgtctagatacatcc 40
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 23 attacttgtcttagatttgtctagatacggatgtatctagcactaaaatgagtctagata 82
||||||||||| | ||||||| | ||||| ||||||||| ||||| |||||||||||
Sbjct: 104 attacttgtctcaaatttgtccaaatacgaatgtatctatgtgtaaaaagagtctagata 45
Query: 83 cat 85
|||
Sbjct: 44 cat 42
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
|||||||||||| || || |||||||| |||| || || | | |||||||||||| ||
Sbjct: 121 tactccctccgtcccaaaatacttgtcgtagaaatgcataaaaatggatgtatctagaac 62
Query: 66 taaaatgagtctagatacatcc 87
|||||| |||||||||||||
Sbjct: 61 taaaatacatctagatacatcc 40
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 6 tactccctccgttccgaattacttgtcttagatttgtctagatacggatgtatctagcac 65
|||||||||||| || || |||||||| |||| || || | | |||||||||||| ||
Sbjct: 5 tactccctccgtcccaaaatacttgtcgtagaaatgcataaaaatggatgtatctagaac 64
Query: 66 taaaatgagtctagatacatcc 87
|||||| |||||||||||||
Sbjct: 65 taaaatacatctagatacatcc 86
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 5 gtactccctccgttccgaattacttgtctt 34
|||||||||||||||| || ||||||||||
Sbjct: 101 gtactccctccgttcctaaatacttgtctt 72
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 51 ggatgtatctagcactaaaa-tgagtctagatacatcc 87
|||||||||||| ||||||| || ||||||||||||||
Sbjct: 41 ggatgtatctagaactaaaaatgcgtctagatacatcc 78
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 gatgtatctagcactaaaatgagtctagatacat 85
|||||||||| |||||||| |||||||||||||
Sbjct: 50 gatgtatctataactaaaataagtctagatacat 83
