miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 228 bits (115), Expect = 2e-59
Identities = 124/127 (97%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtcttagatttgtctagatacggagatatctagcac 64
Query: 74 taaaatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacgga 133
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 65 taaaatgagtctagatacatccgtatctagacaaatccaagacaagtaatttggaacgga 124
Query: 134 gggagta 140
|||||||
Sbjct: 125 gggagta 131
Score = 151 bits (76), Expect = 3e-36
Identities = 117/128 (91%), Gaps = 2/128 (1%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctag-ac 73
Query: 74 taaaatgagt-ctagatacatccgtatctagacaaatccaagacaagtaattcggaacgg 132
| | | ||| ||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 72 tcattttagtgctagatatctccgtatctagacaaatctaagacaagtaattcggaacgg 13
Query: 133 agggagta 140
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 190 bits (96), Expect = 4e-48
Identities = 120/128 (93%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
||||||||||||||||||||||||||||| ||||||||||||||| || | ||||||||
Sbjct: 131 tactccctccgttccaaattacttgtcttcgatttgtctagatacagatatgtctagcac 72
Query: 74 taaaatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacgga 133
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 71 taaaatgagtctagatacatccgtatctagacaaatttaagacaagtaattcagaacgga 12
Query: 134 gggagtac 141
||||||||
Sbjct: 11 gggagtac 4
Score = 121 bits (61), Expect = 3e-27
Identities = 114/129 (88%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagca 72
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 4 gtactccctccgttctgaattacttgtcttaaatttgtctagatacggatgtatctag-a 62
Query: 73 ctaaaatgagt-ctagatacatccgtatctagacaaatccaagacaagtaattcggaacg 131
|| | | ||| ||||| | ||| ||||||||||||||| ||||||||||||| ||||||
Sbjct: 63 ctcattttagtgctagacatatctgtatctagacaaatcgaagacaagtaatttggaacg 122
Query: 132 gagggagta 140
|||||||||
Sbjct: 123 gagggagta 131
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 119 bits (60), Expect = 1e-26
Identities = 111/128 (86%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
||||||||| || ||||||| |||||||||||||||||||||||| || ||||||| ||
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatctaatac 72
Query: 74 taaaatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacgga 133
|||||| | || |||||||||||||||||||||||| |||||||| | || || || ||
Sbjct: 71 gaaaatgtgacttgatacatccgtatctagacaaatctaagacaagaattttgggaccga 12
Query: 134 gggagtac 141
||||||||
Sbjct: 11 gggagtac 4
Score = 69.9 bits (35), Expect = 9e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatc 67
|||||||||| || ||||| | ||||||||||||||||||||||||||| |||||
Sbjct: 4 gtactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatc 58
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 119 bits (60), Expect = 1e-26
Identities = 111/128 (86%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
|||| ||||||||||||| | ||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 131 tacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatctaatac 72
Query: 74 taaaatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacgga 133
||||| | | || ||||||||||||| |||||||||| |||||||| | || || |||||
Sbjct: 71 taaaacgtgacttgatacatccgtatttagacaaatctaagacaagaattttgggacgga 12
Query: 134 gggagtac 141
||||||||
Sbjct: 11 gggagtac 4
Score = 69.9 bits (35), Expect = 9e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatc 67
||||||||||||| ||||| | ||||||||||||||||||| ||||||| |||||
Sbjct: 4 gtactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 58
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 87.7 bits (44), Expect = 4e-17
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
|||||||||||| ||||| | || ||||||||||||| |||||| | | || |||| |||
Sbjct: 131 tactccctccgtcccaaaattctngtcttagatttgtttagatatgaatgtgtctaacac 72
Query: 74 taaaatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacgga 133
||||| | |||||||||||||||| |||||||||| | |||||| | || || |||||
Sbjct: 71 taaaacatgactagatacatccgtatttagacaaatctatgacaagaattttgggacgga 12
Query: 134 gggagta 140
|||||||
Sbjct: 11 gggagta 5
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctag 70
|||||||||||| ||||| | |||||| |||||||||||| ||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatctag 61
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 83.8 bits (42), Expect = 6e-16
Identities = 90/106 (84%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
|||||||||||| ||||| | ||||||||||||||||||||||| ||| ||||||| ||
Sbjct: 131 tactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatctaatac 72
Query: 74 taaaatgagtctagatacatccgtatctagacaaatccaagacaag 119
||||| | | | ||||||||| ||| |||| ||||| ||||||||
Sbjct: 71 taaaacgtgagttgatacatccctatttagaaaaatctaagacaag 26
Score = 63.9 bits (32), Expect = 6e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 85 tagatacatccgtatctagacaaatccaagacaagtaattcggaacggagggagta 140
||||||||||| |||||||||||||| |||||||| | || || ||||||||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagacaagaattttgggacggagggagta 131
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 81.8 bits (41), Expect = 2e-15
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 17 tccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcactaa 76
||||||| | ||||| | ||||||||| |||||| |||||| || ||||||| ||||||
Sbjct: 8 tccctccatcccaaaattcttgtcttacatttgtttagataaagatgtatctaacactaa 67
Query: 77 aatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacggaggg 136
|||| |||||||||||||||| ||||||||| |||||||| | || || ||||||||
Sbjct: 68 aatgtaactagatacatccgtatttagacaaatttaagacaagaattttgggacggaggg 127
Query: 137 agtac 141
||||
Sbjct: 128 ggtac 132
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 81.8 bits (41), Expect = 2e-15
Identities = 104/125 (83%)
Strand = Plus / Minus
Query: 17 tccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcactaa 76
||||||| | ||||| | ||||||||| |||||| |||||||||| ||||||| ||||||
Sbjct: 128 tccctccatcccaaaattcttgtcttacatttgtttagatacggatgtatctaacactaa 69
Query: 77 aatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacggaggg 136
|||| ||| |||||||| ||| ||||||||| ||||||| | || || ||||||||
Sbjct: 68 aatgtaactacatacatccatatttagacaaatttaagacaacaattttgggacggaggg 9
Query: 137 agtac 141
|||||
Sbjct: 8 agtac 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 85 tagatacatccgtatctagacaaatccaagacaag 119
|||||||||||||||||| |||||| ||||||||
Sbjct: 76 tagatacatccgtatctaaacaaatgtaagacaag 110
Score = 44.1 bits (22), Expect = 5e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaattacttgtcttagatttgtctagatacggaggtat 66
||||||||||||| ||||| | |||||||| ||||||||| ||| ||| ||||
Sbjct: 4 gtactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtat 57
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 75.8 bits (38), Expect = 2e-13
Identities = 110/130 (84%), Gaps = 3/130 (2%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgt-cttagatttgtctagatacggaggtatctag-c 71
||||||||||||||||||||||||| | | |||| |||||| ||||| |||||||| |
Sbjct: 132 tactccctccgttccaaattacttggacccatatttatctagacacggatgtatctagac 73
Query: 72 actaaaatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacg 131
|||||| ||| ||||||||||||| | ||||||||| |||| ||| || || ||||||
Sbjct: 72 actaaaca-agtatagatacatccgtgtttagacaaattcaagtcaactattttggaacg 14
Query: 132 gagggagtac 141
||||||||||
Sbjct: 13 gagggagtac 4
Score = 50.1 bits (25), Expect = 9e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatcta 69
||||||||||||||||||| || ||| ||| ||||||||| | ||||| |||||||
Sbjct: 4 gtactccctccgttccaaaatagttgacttgaatttgtctaaacacggatgtatcta 60
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 71.9 bits (36), Expect = 2e-12
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
|||| ||||||| ||||| | ||||||| ||||| |||||||||||| ||||||| |||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatctaacac 72
Query: 74 taaaatgagtctagatacatccgtatctagacaaat 109
||||| | | |||||||||||| ||| |||| ||||
Sbjct: 71 taaaacgtgactagatacatccatatttagagaaat 36
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 85 tagatacatccgtatctagacaaatccaagacaagtaattcggaacggagggagta 140
|||||||||||||||||||| |||||| ||||||| | || || ||||||| ||||
Sbjct: 76 tagatacatccgtatctagataaatcctagacaagaattttgggacggaggtagta 131
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 69.9 bits (35), Expect = 9e-12
Identities = 104/127 (81%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
|||||||||||| |||| | ||||||||| |||||||||||||| | |||| || ||
Sbjct: 5 tactccctccgtctcaaaattcttgtcttacatttgtctagatacatatgtatttaatac 64
Query: 74 taaaatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacgga 133
|||||| | || |||||||||||| |||||||||| |||||||| | || || | |||
Sbjct: 65 taaaatatgacttcatacatccgtatttagacaaatctaagacaagaattttgggatgga 124
Query: 134 gggagta 140
|||||||
Sbjct: 125 gggagta 131
Score = 58.0 bits (29), Expect = 4e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtat 66
|||||||||| | ||||| | ||||||||||||||||||| ||||||| ||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtat 79
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 105/129 (81%)
Strand = Plus / Minus
Query: 13 gtactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagca 72
||||||||||||| ||||| | ||||| ||| |||||||||||||||| ||||||| |
Sbjct: 132 gtactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatctaata 73
Query: 73 ctaaaatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacgg 132
| |||| | | || ||||||| ||| | ||||||||| |||||||| | ||| | ||||
Sbjct: 72 caaaaacgtgacttgatacattcgtctttagacaaatttaagacaagaatttcaggacgg 13
Query: 133 agggagtac 141
|| ||||||
Sbjct: 12 agcgagtac 4
Score = 50.1 bits (25), Expect = 9e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 85 tagatacatccgtatctagacaaatccaagacaagtaattcggaacggagggagtac 141
|||||||||||||||||||||||| | | ||||| | || || |||||||||||||
Sbjct: 76 tagatacatccgtatctagacaaagctacaacaagaattttgggacggagggagtac 132
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctag 70
|||||||||||||||||| | |||||||||||||||| |||||| | | ||||||||
Sbjct: 5 tactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctag 61
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 84 ctagatacatccgtatctagacaaatccaagacaagtaattcggaacggagggagta 140
|||||||||| | |||||| ||||||| |||||||| | || |||||||||||||||
Sbjct: 61 ctagatacattcatatctaaacaaatctaagacaagaattttggaacggagggagta 5
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagata 57
|||||||||||| ||||| | |||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaacttcttgtcttagatttgtctagata 48
Score = 50.1 bits (25), Expect = 9e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 88 atacatccgtatctagacaaatccaagacaagtaattcggaacggagggagta 140
|||||| | |||||||||||||| |||||||| | || || ||||||||||||
Sbjct: 57 atacattcatatctagacaaatctaagacaagaagtttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtcta 53
|||||||||||| ||||| | |||||||||| ||||||||
Sbjct: 138 tactccctccgtcccaaaattcttgtcttaggtttgtcta 99
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 35 cttgtcttagatttgtctagatacggaggtatctagcactaaa 77
|||||||||||||| |||||||||||| ||||||| |||||||
Sbjct: 79 cttgtcttagatttatctagatacggatgtatctaacactaaa 37
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 85 tagatacatccgtatctagacaaatccaagacaag 119
|||||||||||||||||||| ||||| ||||||||
Sbjct: 45 tagatacatccgtatctagataaatctaagacaag 79
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 113 agacaagtaattcggaacggagggagtac 141
|||||||||||||||||||||||||||||
Sbjct: 32 agacaagtaattcggaacggagggagtac 4
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaattacttgtct 41
|||||||||||||||| ||||||||||||
Sbjct: 4 gtactccctccgttccgaattacttgtct 32
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 114 gacaagtaattcggaacggagggagta 140
|||||||||||| ||||||||||||||
Sbjct: 85 gacaagtaattcagaacggagggagta 111
>RF00906;MIR1122;AY244513.1/784-861 4568:Triticum monococcum
Length = 78
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgt 50
||||||||||| |||| ||||||||||||||||||||
Sbjct: 5 tactccctccgatccatattacttgtcttagatttgt 41
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctag 70
|||||||||||| ||||| | ||||||||| ||||||||||||| | | ||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatctag 61
Score = 50.1 bits (25), Expect = 9e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 84 ctagatacatccgtatctagacaaatccaagacaagtaattcggaacggagggagta 140
|||||||||| | ||||||||||||| |||||||| | || || ||||||||||||
Sbjct: 61 ctagatacattcatatctagacaaatgtaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctag 70
|||| ||||||||||||| | |||||||||||||||| |||||| | | ||||||||
Sbjct: 132 tactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatctag 76
Score = 48.1 bits (24), Expect = 3e-05
Identities = 103/128 (80%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatct-agca 72
|||||||||||| | ||| | |||||||||| |||||||||| | || |||||| | |
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagctttgtctagaaattgatgtatctaaata 64
Query: 73 ctaaaatgagtctagatacatccgtatctagacaaatccaagacaagtaattcggaacgg 132
|||||| |||||||||| | |||||| ||||||| |||||||| | || |||||||
Sbjct: 65 ctaaaacttaactagatacattcatatctaaacaaatctaagacaagaattttggaacgg 124
Query: 133 agggagta 140
||| ||||
Sbjct: 125 aggtagta 132
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagata 57
|||||||| ||||||||| | |||||||||||||||||| ||||
Sbjct: 5 tactcccttcgttccaaaattcttgtcttagatttgtcttgata 48
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 35 cttgtcttagatttgtctagatac 58
||||||||||||||||||||||||
Sbjct: 76 cttgtcttagatttgtctagatac 53
Score = 46.1 bits (23), Expect = 1e-04
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 82 gtctagatacatccgtatctagacaaatccaagacaagtaattcggaacggagggagta 140
|||||||||||| | |||| ||||||||| |||||||| | || |||||| ||||||||
Sbjct: 62 gtctagatacat-cttatcaagacaaatctaagacaagaattttggaacgaagggagta 5
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 114 gacaagtaattcggaacggagggagtac 141
||||||||||||||||||||||||||||
Sbjct: 117 gacaagtaattcggaacggagggagtac 144
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 gtactccctccgttccaaattacttgtc 40
|||||||||||||||| |||||||||||
Sbjct: 144 gtactccctccgttccgaattacttgtc 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 114 gacaagtaattcggaacggagggagta 140
|||||||||||||||||| ||||||||
Sbjct: 31 gacaagtaattcggaacgaagggagta 5
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacgga 61
|||||||||||| ||||| | |||||||||||||| | ||||||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 26 tccaaattacttgtcttagatttgtctagatacgga 61
|||||| | |||||||||||||| ||||||||||||
Sbjct: 16 tccaaaattcttgtcttagatttatctagatacgga 51
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 90 acatccgtatctagacaaatccaagacaag 119
||||||||||||||| ||||| ||||||||
Sbjct: 54 acatccgtatctagataaatctaagacaag 25
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagata 57
|||||||||||| | ||| | |||||||||||||||||||||||
Sbjct: 5 tactccctccgtcctaaaattcttgtcttagatttgtctagata 48
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 114 gacaagtaattcggaacggagggagtac 141
||||||||||||||||||||||||||||
Sbjct: 85 gacaagtaattcggaacggagggagtac 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 gtactccctccgttccaaattacttgtc 40
|||||||||||||||| |||||||||||
Sbjct: 112 gtactccctccgttccgaattacttgtc 85
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctag 70
||||||||||||| ||||| | ||||||||||||||| |||||| | | ||||||||
Sbjct: 4 gtactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctag 61
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 84 ctagatacatccgtatctagacaaatccaagacaagtaattcggaacggagggagtac 141
|||||||||| | |||||| ||||||| ||||||| | || || |||||||||||||
Sbjct: 61 ctagatacattcatatctaaacaaatctaagacaataattttgggacggagggagtac 4
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 87/106 (82%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagc-a 72
|||||||||||| ||||| | |||||||||||| | | |||||| ||| | || || |
Sbjct: 132 tactccctccgtcccaaaattcttgtcttagatgtttttagatatggatgcatttaaata 73
Query: 73 ctaaaatgagtctagatacatccgtatctagacaaatccaagacaa 118
|||||||| |||||||||||| ||||||||||||| ||| ||||
Sbjct: 72 ctaaaatgtaactagatacatccatatctagacaaattcaaaacaa 27
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 113 agacaagtaattcggaacggagggagtac 141
||||||||||||| |||||||||||||||
Sbjct: 84 agacaagtaattccgaacggagggagtac 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 113 agacaagtaattcggaacggagggagta 140
||||||||||||| ||||||||||||||
Sbjct: 32 agacaagtaattccgaacggagggagta 5
>RF00906;MIR1122;AY963808.1/8398-8494 4565:Triticum aestivum
(bread wheat)
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaattacttgtc 40
||||||||||||||||| ||||||||||
Sbjct: 4 gtactccctccgttccatattacttgtc 31
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 13 gtactccctccgttccaaattact 36
||||||||||||||||||||||||
Sbjct: 112 gtactccctccgttccaaattact 89
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtcta 53
|||||||||||||||||| | |||||||||| |||||||
Sbjct: 132 tactccctccgttccaaaattcttgtcttagcattgtcta 93
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 114 gacaagtaattcggaacggagggagtac 141
|||||||||||| |||||||||||||||
Sbjct: 31 gacaagtaattccgaacggagggagtac 4
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 114 gacaagtaattcggaacggaggg 136
|||||||||||||||||||||||
Sbjct: 85 gacaagtaattcggaacggaggg 107
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattact 36
|||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattact 27
>RF00906;MIR1122;FJ394375.1/382-487 4568:Triticum monococcum
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 82 gtctagatacatccgtatctagacaaatccaagacaagtaattcggaacggagggagta 140
||||||||||| | |||||||||||||| ||| ||| ||| |||| | ||||||||||
Sbjct: 44 gtctagatacacctgtatctagacaaatataaggcaactaaatcgggatggagggagta 102
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtc 40
|||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgttccaaaatacttgtc 31
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattact 36
|||||||||||||||||||||||
Sbjct: 110 tactccctccgttccaaattact 88
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 13 gtactccctccgttccaaattacttgtcttagatttgtc 51
||||||||||||||||||| |||||| ||| |||||||
Sbjct: 133 gtactccctccgttccaaaatacttgacttccatttgtc 95
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 114 gacaagtaattcggaacggagggagta 140
|||||||||||| ||||||||||||||
Sbjct: 85 gacaagtaattccgaacggagggagta 111
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 85 tagatacatccgtatctagacaaatccaagacaag 119
||||||||| | |||||||||||||| ||||||||
Sbjct: 60 tagatacattcatatctagacaaatctaagacaag 26
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 35 cttgtcttagatttgtctagata 57
|||||||||||||||||||||||
Sbjct: 26 cttgtcttagatttgtctagata 48
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 85 tagatacatccgtatctagacaaatccaagacaag 119
|||||||||||||||||||| ||||| |||||||
Sbjct: 60 tagatacatccgtatctagataaatcttagacaag 26
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 35 cttgtcttagatttgtctagatacggaggtatcta 69
||||||| |||||| |||||||||||| |||||||
Sbjct: 26 cttgtctaagatttatctagatacggatgtatcta 60
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 82 gtctagatacatccgtatctagacaaatccaagacaagtaattcggaacggagggagta 140
||||||||||||||| || | ||||||| ||| || ||||| |||||||||||||||
Sbjct: 63 gtctagatacatccgcatgtggacaaatggaagtcatctaatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 gtactccctccgttccaaatta 34
||||||||||||||||||||||
Sbjct: 145 gtactccctccgttccaaatta 124
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 gtactccctccgttccaaatta 34
||||||||||||||||||||||
Sbjct: 155 gtactccctccgttccaaatta 134
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 gtactccctccgttccaaatta 34
||||||||||||||||||||||
Sbjct: 149 gtactccctccgttccaaatta 128
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaatta 34
||||||||||||||||||||||
Sbjct: 4 gtactccctccgttccaaatta 25
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 108 atccaagacaagtaattcggaacggagggagtac 141
|||| ||||||||||||| ||| |||||||||||
Sbjct: 37 atccgagacaagtaattccgaatggagggagtac 4
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 ctccctccgttccaaattacttgtct 41
||||||||||||||||||||| ||||
Sbjct: 109 ctccctccgttccaaattactcgtct 84
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
|||||||||||| ||||| |||||||| |||| || || | | ||| |||||||| ||
Sbjct: 121 tactccctccgtcccaaaatacttgtcgtagaaatgcataaaaatggatgtatctagaac 62
Query: 74 taaaatgagtctagatacatcc 95
|||||| |||||||||||||
Sbjct: 61 taaaatacatctagatacatcc 40
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 14 tactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctagcac 73
|||||||||||| ||||| |||||||| |||| || || | | ||| |||||||| ||
Sbjct: 5 tactccctccgtcccaaaatacttgtcgtagaaatgcataaaaatggatgtatctagaac 64
Query: 74 taaaatgagtctagatacatcc 95
|||||| |||||||||||||
Sbjct: 65 taaaatacatctagatacatcc 86
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 gtactccctccgttccaaattacttgtctt 42
|||||||||||||||| || ||||||||||
Sbjct: 101 gtactccctccgttcctaaatacttgtctt 72
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 112 aagacaagtaattcggaacggagggagtac 141
|||||||||| || ||||||||||||||||
Sbjct: 72 aagacaagtatttaggaacggagggagtac 101
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 13 gtactccctccgttccaaattacttgtcttagatttgtctagatacggaggtatctag 70
||||||||||||| |||| | |||| |||| |||||| |||||||| | ||||||||
Sbjct: 4 gtactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatctag 61
>RF00906;MIR1122;FJ394373.1/383-480 4573:Aegilops speltoides
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 tccgttccaaattacttgtcttagatttgt 50
||||| |||||||| |||||||||||||||
Sbjct: 12 tccgtcccaaattagttgtcttagatttgt 41
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 91 catccgtatctagacaaatccaagacaagtaattcggaacggagggagta 140
|||||| || || ||||||| ||| ||| |||||||| ||||||||||||
Sbjct: 45 catccgcatataaacaaatctaaggcaactaattcgggacggagggagta 94
