miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 137 bits (69), Expect = 6e-32
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 85 tagatacggatgtatctagcactaaaatgagtctagatacatccgtatctagacaaatct 144
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 tagatacggagatatctagcactaaaatgagtctagatacatccgtatctagacaaatcc 102
Query: 145 aagacaagtaattcggaagggagggagta 173
||||||||||||| |||| ||||||||||
Sbjct: 103 aagacaagtaatttggaacggagggagta 131
Score = 107 bits (54), Expect = 5e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatctcgcac 75
||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct: 5 tactccctccgttccgaattacttgtcttagatttgtctagatacggagatatctagcac 64
Query: 76 taaaatgagt 85
||||||||||
Sbjct: 65 taaaatgagt 74
Score = 103 bits (52), Expect = 9e-22
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 15 ctactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ctactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatct 77
Score = 91.7 bits (46), Expect = 3e-18
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctagcactaaaatgagt-ctagatacatccgtatctagacaaatc 143
||||||||||||||||||| ||| | | ||| ||||||| ||||||||||||||||||
Sbjct: 93 tagatacggatgtatctag-actcattttagtgctagatatctccgtatctagacaaatc 35
Query: 144 taagacaagtaattcggaagggagggagta 173
||||||||||||||||||| ||||||||||
Sbjct: 34 taagacaagtaattcggaacggagggagta 5
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 133 bits (67), Expect = 1e-30
Identities = 85/91 (93%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctagcactaaaatgagtctagatacatccgtatctagacaaatct 144
||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 93 tagatacagatatgtctagcactaaaatgagtctagatacatccgtatctagacaaattt 34
Query: 145 aagacaagtaattcggaagggagggagtaca 175
|||||||||||||| ||| ||||||||||||
Sbjct: 33 aagacaagtaattcagaacggagggagtaca 3
Score = 93.7 bits (47), Expect = 8e-19
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 15 ctactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatctcgca 74
|||||||||||||||| ||||||||||||| ||||||||||||||| ||| | ||| |||
Sbjct: 132 ctactccctccgttccaaattacttgtcttcgatttgtctagatacagatatgtctagca 73
Query: 75 ctaaaatgagt 85
|||||||||||
Sbjct: 72 ctaaaatgagt 62
Score = 85.7 bits (43), Expect = 2e-16
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 5 tactccctccgttctgaattacttgtcttaaatttgtctagatacggatgtatct 59
Score = 67.9 bits (34), Expect = 5e-11
Identities = 78/90 (86%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 85 tagatacggatgtatctagcactaaaatgagt-ctagatacatccgtatctagacaaatc 143
||||||||||||||||||| ||| | | ||| ||||| | ||| |||||||||||||||
Sbjct: 43 tagatacggatgtatctag-actcattttagtgctagacatatctgtatctagacaaatc 101
Query: 144 taagacaagtaattcggaagggagggagta 173
||||||||||||| |||| ||||||||||
Sbjct: 102 gaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 85.7 bits (43), Expect = 2e-16
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctagcactaaaatgagtctagatacatccgtatctagacaaatct 144
|||||||||||||||||| ||||||| | | || ||||||||||||| |||||||||||
Sbjct: 93 tagatacggatgtatctaatactaaaacgtgacttgatacatccgtatttagacaaatct 34
Query: 145 aagacaagtaattcggaagggagggagtaca 175
|||||||| | || || | ||||||||||||
Sbjct: 33 aagacaagaattttgggacggagggagtaca 3
Score = 63.9 bits (32), Expect = 7e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 118 tagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
||||||||||||||||||| ||||||||||||||| | || |||| ||||| ||||
Sbjct: 76 tagatacatccgtatctaggcaaatctaagacaagaattttggaacggaggaagta 131
Score = 61.9 bits (31), Expect = 3e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
|||| |||||||||| || | |||||||| |||||| ||||||||||||||||||
Sbjct: 131 tacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatct 77
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatc 69
|||||||||||| || || | |||||||| |||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatc 58
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 79.8 bits (40), Expect = 1e-14
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctagcactaaaatgagtctagatacatccgtatctagacaaatct 144
||||||| |||||||||| || |||||| | || |||||||||||||||||||||||||
Sbjct: 93 tagatacagatgtatctaatacgaaaatgtgacttgatacatccgtatctagacaaatct 34
Query: 145 aagacaag 152
||||||||
Sbjct: 33 aagacaag 26
Score = 65.9 bits (33), Expect = 2e-10
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 14 actactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
||||||||||| || || |||| |||||||| ||||||||||||||| |||||||||
Sbjct: 133 actactccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatct 77
Score = 63.9 bits (32), Expect = 7e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 118 tagatacatccgtatctagacaaatctaagacaagtaatt 157
|||||||||| |||||||||||||||||||||||| ||||
Sbjct: 76 tagatacatctgtatctagacaaatctaagacaagaaatt 115
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatc 69
||||||||| || || || | |||||||| ||||||||||||||||||||||||
Sbjct: 5 tactccctcggtcccaaaattcttgtcttagatttgtctagatacggatgtatc 58
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 71.9 bits (36), Expect = 3e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 93 gatgtatctagcactaaaatgagtctagatacatccgtatctagacaaatctaagacaag 152
|||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||
Sbjct: 51 gatgtatctaacactaaaatgtaactagatacatccgtatttagacaaatttaagacaag 110
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 20 ccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
|||||||| || || | |||||||| ||||||||| ||||||||||||||
Sbjct: 127 ccctccgtcccaaaattcttgtcttaaatttgtctaaatacggatgtatct 77
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 69.9 bits (35), Expect = 1e-11
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctagcactaaaatgagtctagatacatccgtatctagacaaatct 144
|||||||||||||||||| |||||||||| ||| |||||||| ||| ||||||||| |
Sbjct: 93 tagatacggatgtatctaacactaaaatgtaactacatacatccatatttagacaaattt 34
Query: 145 aagacaa 151
|||||||
Sbjct: 33 aagacaa 27
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 118 tagatacatccgtatctagacaaatctaagacaag 152
|||||||||||||||||| |||||| |||||||||
Sbjct: 76 tagatacatccgtatctaaacaaatgtaagacaag 110
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 37 cttgtcttggatttgtctagatacggatgtatctcgcactaaaatg 82
|||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct: 110 cttgtcttacatttgtttagatacggatgtatctaacactaaaatg 65
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 65.9 bits (33), Expect = 2e-10
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctagcactaaaatgagtctagatacatccgtatctagacaaatct 144
|||||||||||||||||| |||||||| | | |||||||||||| ||| |||| |||| |
Sbjct: 93 tagatacggatgtatctaacactaaaacgtgactagatacatccatatttagagaaattt 34
Query: 145 aagac 149
|||||
Sbjct: 33 aagac 29
Score = 61.9 bits (31), Expect = 3e-09
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 14 actactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatctcgc 73
|||||| ||||||| || || | ||||||| |||||| ||||||||||||||||||| |
Sbjct: 133 actactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatctaac 74
Query: 74 actaaaa 80
|||||||
Sbjct: 73 actaaaa 67
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 118 tagatacatccgtatctagacaaatctaagacaag 152
|||||||||||||||||||| ||||| |||||||
Sbjct: 76 tagatacatccgtatctagataaatcctagacaag 110
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 63.9 bits (32), Expect = 7e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 118 tagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
||||||||||| ||||||||||||||||||||||| | || || | ||||||||||
Sbjct: 76 tagatacatccatatctagacaaatctaagacaagaattttgggacggagggagta 131
Score = 61.9 bits (31), Expect = 3e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
|||||||||||| || || | |||||||| |||||||||||||| ||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatct 77
Score = 48.1 bits (24), Expect = 4e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctagcactaaaatgagtctagatacatccgtatctagacaaatct 144
|||||| ||||||||||| ||||||| | | | ||||||||| ||| |||| ||||||
Sbjct: 93 tagatatggatgtatctaatactaaaacgtgagttgatacatccctatttagaaaaatct 34
Query: 145 aagacaag 152
||||||||
Sbjct: 33 aagacaag 26
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 118 tagatacatccgtatctagacaaatctaagacaag 152
|||||||||||||||||||| ||||||||||||||
Sbjct: 45 tagatacatccgtatctagataaatctaagacaag 79
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 37 cttgtcttggatttgtctagatacggatgtatctcgcactaaa 79
|||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 79 cttgtcttagatttatctagatacggatgtatctaacactaaa 37
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctagcactaaa 110
|||||||||||||||||| |||||||
Sbjct: 62 tagatacggatgtatctaacactaaa 37
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 5e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 121 atacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
|||||||||||| ||||||||||||||||||| | || || | ||||||||||
Sbjct: 79 atacatccgtatttagacaaatctaagacaagaattttgggatggagggagta 131
Score = 54.0 bits (27), Expect = 7e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 14 actactccctccgttccgaattacttgtcttggatttgtctagatacggatgtat 68
|||||||||||| | || || | |||||||| |||||||||| ||||||||||||
Sbjct: 133 actactccctccatcccaaaattcttgtcttagatttgtctaaatacggatgtat 79
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 58.0 bits (29), Expect = 5e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 117 ctagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
|||||||||| | |||||| |||||||||||||||| | || |||| ||||||||||
Sbjct: 61 ctagatacattcatatctaaacaaatctaagacaagaattttggaacggagggagta 5
Score = 54.0 bits (27), Expect = 7e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
||||||||||||||| || | |||||||| ||||||| |||||| | ||||||||
Sbjct: 5 tactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatct 59
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 58.0 bits (29), Expect = 5e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 117 ctagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
|||||||||||||||| |||||||||||| |||||| | || || | ||||||||||
Sbjct: 61 ctagatacatccgtatttagacaaatctatgacaagaattttgggacggagggagta 5
Score = 54.0 bits (27), Expect = 7e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
|||||||||||| || || | |||||| | |||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcatagatttgtctaaatacggatgtatct 59
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtct 43
||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtct 32
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 146 agacaagtaattcggaagggagggagtac 174
||||||||||||||||| |||||||||||
Sbjct: 32 agacaagtaattcggaacggagggagtac 4
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 92 ggatgtatctagcactaaaatgagtctagatacatcc 128
|||||||||||| |||||||| ||||||||||||||
Sbjct: 40 ggatgtatctagaactaaaatatgtctagatacatcc 76
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgttccgaattacttgtc 42
|||||||||||||| ||||||||||||
Sbjct: 111 tactccctccgttctgaattacttgtc 85
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgttccgaattacttgtc 42
|||||||||||||||||||||||||||
Sbjct: 143 tactccctccgttccgaattacttgtc 117
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 147 gacaagtaattcggaagggagggagtacac 176
|||||||||||||||| |||||||||||||
Sbjct: 117 gacaagtaattcggaacggagggagtacac 146
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtc 42
|||||||| ||||||||||||||||||
Sbjct: 5 tactcccttcgttccgaattacttgtc 31
>RF00906;MIR1122;FJ394375.1/382-487 4568:Triticum monococcum
Length = 106
Score = 54.0 bits (27), Expect = 7e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 115 gtctagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
||||||||||| | |||||||||||||| |||| ||| ||| |||| | ||||||||||
Sbjct: 44 gtctagatacacctgtatctagacaaatataaggcaactaaatcgggatggagggagta 102
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 54.0 bits (27), Expect = 7e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
||||||||||||||| || || ||| |||| ||||||||| | ||||||||||||
Sbjct: 5 tactccctccgttccaaaatagttgacttgaatttgtctaaacacggatgtatct 59
Score = 48.1 bits (24), Expect = 4e-05
Identities = 77/92 (83%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctag-cactaaaatgagtctagatacatccgtatctagacaaatc 143
|||| |||||||||||||| ||||||| ||| ||||||||||||| | |||||||||
Sbjct: 93 tagacacggatgtatctagacactaaaca-agtatagatacatccgtgtttagacaaatt 35
Query: 144 taagacaagtaattcggaagggagggagtaca 175
||| ||| || || |||| ||||||||||||
Sbjct: 34 caagtcaactattttggaacggagggagtaca 3
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 118 tagatacatccgtatctagacaaatctaagacaag 152
||||||||| | |||||||||||||||||||||||
Sbjct: 60 tagatacattcatatctagacaaatctaagacaag 26
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 37 cttgtcttggatttgtctagatacggatgtatct 70
|||||||| |||||||||||||| | ||||||||
Sbjct: 26 cttgtcttagatttgtctagatatgaatgtatct 59
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 118 tagatacatccgtatctagacaaatctaagacaag 152
|||||||||||||||||||| |||||| |||||||
Sbjct: 60 tagatacatccgtatctagataaatcttagacaag 26
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 37 cttgtcttggatttgtctagatacggatgtatct 70
||||||| ||||| |||||||||||||||||||
Sbjct: 26 cttgtctaagatttatctagatacggatgtatct 59
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 16 tactccctccgttccgaattacttgtc 42
|||||||||||||||||||||||||||
Sbjct: 111 tactccctccgttccgaattacttgtc 85
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 147 gacaagtaattcggaagggagggagtac 174
|||||||||||||||| |||||||||||
Sbjct: 85 gacaagtaattcggaacggagggagtac 112
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 tactactccctccgttccgaattacttgtc 42
|||||| |||||||||||||||||||||||
Sbjct: 114 tactacgccctccgttccgaattacttgtc 85
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 123 acatccgtatctagacaaatctaagacaag 152
||||||||||||||| ||||||||||||||
Sbjct: 54 acatccgtatctagataaatctaagacaag 25
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 37 cttgtcttggatttgtctagatacggatgt 66
|||||||| ||||| |||||||||||||||
Sbjct: 25 cttgtcttagatttatctagatacggatgt 54
Score = 44.1 bits (22), Expect = 7e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 14 actactccctccgttccgaattacttgtcttggatttgtctagatacgga 63
|||||||||||||| || || | |||||||| ||||| | ||||||||||
Sbjct: 103 actactccctccgtcccaaaattcttgtcttagatttatttagatacgga 54
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 actactccctccgttccgaattacttgtct 43
|||||||||||||||| |||||||||||||
Sbjct: 3 actactccctccgttcggaattacttgtct 32
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgttccgaattacttgtct 43
|||||||||||||| |||||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtct 84
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 118 tagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagtac 174
|||||||||||||||||||||||| ||| ||||| | || || | |||||||||||
Sbjct: 76 tagatacatccgtatctagacaaagctacaacaagaattttgggacggagggagtac 132
Score = 48.1 bits (24), Expect = 4e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 85 tagatacggatgtatctagcactaaaatgagtctagatacatccgtatctagacaaatct 144
|||||||||||||||||| || |||| | | || ||||||| ||| | ||||||||| |
Sbjct: 93 tagatacggatgtatctaatacaaaaacgtgacttgatacattcgtctttagacaaattt 34
Query: 145 aagacaag 152
||||||||
Sbjct: 33 aagacaag 26
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttgtctagatacggatgtatct 70
|||||||||||||||||||||||
Sbjct: 99 tttgtctagatacggatgtatct 77
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 121 atacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
|||||| | ||||||||||||||||||||||| | || || | ||||||||||
Sbjct: 57 atacattcatatctagacaaatctaagacaagaagtttgggacggagggagta 5
Score = 50.1 bits (25), Expect = 1e-05
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatgtat 68
|||||||||||| || || | |||||||| |||||||||||||| | ||||||
Sbjct: 5 tactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtat 57
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 92 ggatgtatctagcactaaaatgagtctagatacatcc 128
|||||||||||| |||||||| ||||||||||||||
Sbjct: 50 ggatgtatctagaactaaaatacgtctagatacatcc 86
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 14 actactccctccgttccgaattacttgtcttggatttgtctagatacggatgtatct 70
|||||||||||||| || || | |||||||| ||||||||||||| | ||||||||
Sbjct: 3 actactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatct 59
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 117 ctagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
|||||||||| | ||||||||||||| ||||||||| | || || | ||||||||||
Sbjct: 61 ctagatacattcatatctagacaaatgtaagacaagaattttgggacggagggagta 5
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 117 ctagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
|||||||||| | |||||| |||||||||||||||| | || |||| ||||| ||||
Sbjct: 76 ctagatacattcatatctaaacaaatctaagacaagaattttggaacggaggtagta 132
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 92 ggatgtatctagcactaaaatgagtctagatacatcc 128
|||||||||||| |||||||| ||||||||||||||
Sbjct: 76 ggatgtatctagaactaaaatacgtctagatacatcc 40
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 129 gtatctagacaaatctaagacaag 152
||||||||||||||||||||||||
Sbjct: 53 gtatctagacaaatctaagacaag 76
Score = 46.1 bits (23), Expect = 2e-04
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 115 gtctagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
||||||||||||| |||| |||||||||||||||||| | || |||| | ||||||||
Sbjct: 62 gtctagatacatct-tatcaagacaaatctaagacaagaattttggaacgaagggagta 5
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 93 gatgtatctagcactaaaatgagtctagatacatcc 128
||||||||||| |||||||| ||||||||||||||
Sbjct: 85 gatgtatctagaactaaaatatgtctagatacatcc 50
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 93 gatgtatctagcactaaaatgagtctagatacatcc 128
||||||||||| |||||||| ||||||||||||||
Sbjct: 41 gatgtatctagaactaaaatacgtctagatacatcc 76
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactccctccgttccgaattacttgtc 42
|||||||||||||| ||||||||||||
Sbjct: 111 tactccctccgttcggaattacttgtc 85
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 118 tagatacatccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
||||||||||| |||||||||| |||||||||| | || |||| ||||||||||
Sbjct: 76 tagatacatccagttctagacaaagctaagacaagaattttggaatggagggagta 131
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 117 ctagatacatccgtatctagacaaatctaagacaag 152
|||||||||| | ||| |||||||||||||||||||
Sbjct: 61 ctagatacattcatatttagacaaatctaagacaag 26
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 ctactactccctccgttccgaattact 38
|||||||||||||||||| ||||||||
Sbjct: 1 ctactactccctccgttctgaattact 27
>RF00906;MIR1122;AY244513.1/784-861 4568:Triticum monococcum
Length = 78
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 14 actactccctccgttccgaattacttgtcttggatttgt 52
||||||||||||| ||| |||||||||||| |||||||
Sbjct: 3 actactccctccgatccatattacttgtcttagatttgt 41
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 92 ggatgtatctagcactaaaatgagtctagatacat 126
|||||||||||||||| |||| ||||||||||||
Sbjct: 40 ggatgtatctagcactgaaatacgtctagatacat 74
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 92 ggatgtatctagcactaaaatgagtctagatacat 126
||||||||||| |||||||| |||||||||||||
Sbjct: 49 ggatgtatctataactaaaataagtctagatacat 83
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 117 ctagatacatccgtatctagacaaatctaagacaa 151
|||||||||| | |||||| |||||||||||||||
Sbjct: 61 ctagatacattcatatctaaacaaatctaagacaa 27
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 130 tatctagacaaatctaagacaag 152
|||||||||||||||||||||||
Sbjct: 48 tatctagacaaatctaagacaag 26
>RF00906;MIR1122;EU282716.1/1526-1412 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 90 acggatgtatctagcactaaaatgagtctagatacatcc 128
|||||||||| ||||||| |||| ||||||||||||||
Sbjct: 78 acggatgtatttagcactgaaatacgtctagatacatcc 40
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 tactccctccgttccgaattacttgtc 42
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgttcggaattacttgtc 31
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactactccctccgttccgaattact 38
|||||||||||||||||| |||||||
Sbjct: 2 tactactccctccgttccaaattact 27
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 tactactccctccgttccgaattacttgtc 42
||||||||||||||||| ||| ||||||||
Sbjct: 124 tactactccctccgttcagaaatacttgtc 95
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 44.1 bits (22), Expect = 7e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 92 ggatgtatctagcactaaaa-tgagtctagatacatcc 128
|||||||||||| ||||||| || ||||||||||||||
Sbjct: 41 ggatgtatctagaactaaaaatgcgtctagatacatcc 78
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 117 ctagatacatccgtatctagacaaat 142
|||||||||||| |||||||||||||
Sbjct: 61 ctagatacatccatatctagacaaat 36
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 93 gatgtatctagcactaaaatgagtctagatacat 126
|||||||||| |||||||| |||||||||||||
Sbjct: 50 gatgtatctataactaaaataagtctagatacat 83
>RF00906;MIR1122;FJ394373.1/383-480 4573:Aegilops speltoides
Length = 98
Score = 44.1 bits (22), Expect = 7e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 16 tactccctccgttccgaattacttgtcttggatttgtctagatacggatg 65
|||||||||||| |||||||| ||| ||| ||||||| || || ||||||
Sbjct: 94 tactccctccgtcccgaattagttgccttagatttgtttatatgcggatg 45
Score = 44.1 bits (22), Expect = 7e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 124 catccgtatctagacaaatctaagacaagtaattcggaagggagggagta 173
|||||| || || ||||||||||| ||| |||||||| | ||||||||||
Sbjct: 45 catccgcatataaacaaatctaaggcaactaattcgggacggagggagta 94
